Wall clock time and date at job start Tue Mar 31 2020 23:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99847 * 2 1 4 4 H 1.48499 * 109.46978 * 269.99601 * 3 2 1 5 5 H 1.48495 * 109.47506 * 29.99654 * 3 2 1 6 6 H 1.48500 * 109.47161 * 149.99648 * 3 2 1 7 7 C 1.37880 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99413 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00085 * 180.02562 * 7 2 1 10 10 N 1.46896 * 109.46981 * 180.02562 * 9 7 2 11 11 C 1.46955 * 111.00049 * 169.99525 * 10 9 7 12 12 C 1.53049 * 109.36436 * 183.18539 * 11 10 9 13 13 N 1.46956 * 109.36632 * 301.60352 * 12 11 10 14 14 C 1.46900 * 111.00164 * 183.19000 * 13 12 11 15 15 C 1.50693 * 109.47672 * 169.99782 * 14 13 12 16 16 C 1.38169 * 120.02813 * 260.00091 * 15 14 13 17 17 C 1.38243 * 120.05455 * 179.97438 * 16 15 14 18 18 C 1.38295 * 120.11401 * 0.04496 * 17 16 15 19 19 C 1.38122 * 120.05026 * 359.97438 * 18 17 16 20 20 C 1.38712 * 120.02675 * 79.97324 * 15 14 13 21 21 O 1.35897 * 120.05621 * 0.04919 * 20 15 14 22 22 C 1.42904 * 116.99781 * 179.97438 * 21 20 15 23 23 C 1.50703 * 109.46628 * 180.02562 * 22 21 20 24 24 O 1.20820 * 120.00270 * 359.97438 * 23 22 21 25 25 O 1.34228 * 119.99734 * 180.02562 * 23 22 21 26 26 C 1.46952 * 110.88403 * 59.32154 * 13 12 11 27 27 C 1.46956 * 110.99893 * 293.79820 * 10 9 7 28 28 H 0.97000 * 119.99792 * 0.02562 * 1 2 3 29 29 H 1.08991 * 109.47151 * 59.99712 * 9 7 2 30 30 H 1.08999 * 109.46869 * 299.99958 * 9 7 2 31 31 H 1.09004 * 109.48349 * 63.22280 * 11 10 9 32 32 H 1.08997 * 109.49313 * 303.15838 * 11 10 9 33 33 H 1.08999 * 109.49073 * 181.63448 * 12 11 10 34 34 H 1.09004 * 109.48980 * 61.57116 * 12 11 10 35 35 H 1.09000 * 109.46954 * 49.99406 * 14 13 12 36 36 H 1.09004 * 109.47193 * 290.00050 * 14 13 12 37 37 H 1.07998 * 119.97356 * 359.97438 * 16 15 14 38 38 H 1.07997 * 119.94707 * 180.02562 * 17 16 15 39 39 H 1.07997 * 119.97026 * 179.70067 * 18 17 16 40 40 H 1.08002 * 120.02294 * 179.97438 * 19 18 17 41 41 H 1.08993 * 109.47145 * 299.99865 * 22 21 20 42 42 H 1.08996 * 109.47124 * 60.00356 * 22 21 20 43 43 H 0.96700 * 117.00449 * 179.97438 * 25 23 22 44 44 H 1.08998 * 109.48917 * 60.64050 * 26 13 12 45 45 H 1.08998 * 109.48868 * 180.71842 * 26 13 12 46 46 H 1.08998 * 109.48931 * 296.77707 * 27 10 9 47 47 H 1.08996 * 109.48944 * 56.84745 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 4.0012 -2.5790 0.0010 11 6 5.4507 -2.6251 -0.2368 12 6 5.9070 -4.0842 -0.3085 13 7 5.5601 -4.7655 0.9465 14 6 6.0498 -6.1505 0.9465 15 6 5.8973 -6.7374 2.3260 16 6 6.9867 -6.8044 3.1732 17 6 6.8473 -7.3422 4.4391 18 6 5.6180 -7.8152 4.8605 19 6 4.5260 -7.7508 4.0172 20 6 4.6630 -7.2102 2.7466 21 8 3.5900 -7.1458 1.9151 22 6 2.3506 -7.6519 2.4149 23 6 1.2840 -7.4984 1.3613 24 8 1.5571 -7.0056 0.2925 25 8 0.0304 -7.9081 1.6108 26 6 4.1107 -4.7195 1.1843 27 6 3.6543 -3.2603 1.2560 28 1 -0.4850 0.8401 -0.0004 29 1 3.8745 -0.6800 0.8910 30 1 3.8752 -0.6804 -0.8888 31 1 5.9692 -2.1216 0.5792 32 1 5.6810 -2.1254 -1.1777 33 1 6.9864 -4.1209 -0.4559 34 1 5.4089 -4.5805 -1.1414 35 1 7.1014 -6.1640 0.6601 36 1 5.4719 -6.7402 0.2348 37 1 7.9480 -6.4364 2.8462 38 1 7.6999 -7.3934 5.1000 39 1 5.5128 -8.2393 5.8481 40 1 3.5663 -8.1207 4.3466 41 1 2.4636 -8.7065 2.6659 42 1 2.0638 -7.0948 3.3067 43 1 -0.6193 -7.7886 0.9047 44 1 3.5922 -5.2229 0.3683 45 1 3.8805 -5.2191 2.1252 46 1 4.1525 -2.7641 2.0889 47 1 2.5750 -3.2237 1.4034 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231792281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:23 Heat of formation + Delta-G solvation = -69.917667 kcal Electronic energy + Delta-G solvation = -29862.724622 eV Core-core repulsion = 25818.664941 eV Total energy + Delta-G solvation = -4044.059681 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.97652 -40.04193 -38.45878 -37.63503 -36.18680 -35.22604 -32.60723 -31.63758 -30.58791 -30.21296 -29.16229 -28.31309 -26.05053 -23.76589 -23.45919 -22.75230 -21.57488 -21.22688 -20.83163 -19.07925 -18.66044 -17.72993 -17.11501 -17.03945 -16.71445 -15.95332 -15.79758 -15.72540 -14.98555 -14.60126 -14.54446 -14.29914 -14.16726 -13.95087 -13.66945 -13.53225 -13.29311 -12.81850 -12.73608 -12.55302 -12.26530 -12.07119 -11.87054 -11.70806 -11.50642 -11.33548 -11.29653 -11.03881 -10.81721 -10.67129 -10.53777 -10.45686 -10.23945 -9.88951 -9.73549 -9.18643 -9.04708 -8.50861 -8.39687 -7.93861 -7.22316 -5.99458 -3.95820 1.14705 1.24689 2.00691 2.09371 3.32749 3.39574 3.43071 3.44571 3.53998 4.36869 4.47254 4.47771 4.61821 4.63796 4.69412 4.84912 4.92182 4.94092 5.13199 5.16447 5.33131 5.39284 5.43433 5.50867 5.64251 5.71599 5.82712 5.89238 5.97401 6.09551 6.13261 6.21002 6.24549 6.30705 6.34724 6.39455 6.46216 6.57368 6.73019 6.78311 6.94565 7.06742 7.09331 7.36816 7.45127 7.68460 7.70436 8.03074 8.17858 8.74626 9.10113 9.62957 11.13855 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010923 B = 0.003771 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.671430 B = 7423.864959 C = 8951.267723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.505 4.505 8 H 0.080 0.920 9 C 0.162 3.838 10 N -0.528 5.528 11 C 0.056 3.944 12 C 0.061 3.939 13 N -0.534 5.534 14 C 0.099 3.901 15 C -0.094 4.094 16 C -0.066 4.066 17 C -0.155 4.155 18 C -0.084 4.084 19 C -0.209 4.209 20 C 0.133 3.867 21 O -0.285 6.285 22 C 0.067 3.933 23 C 0.476 3.524 24 O -0.475 6.475 25 O -0.515 6.515 26 C 0.060 3.940 27 C 0.069 3.931 28 H 0.262 0.738 29 H -0.012 1.012 30 H 0.023 0.977 31 H 0.029 0.971 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.040 0.960 35 H 0.078 0.922 36 H 0.047 0.953 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.128 0.872 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.421 0.579 44 H 0.052 0.948 45 H 0.075 0.925 46 H 0.023 0.977 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.772 -20.320 8.919 24.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.544 4.544 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.252 5.252 11 C -0.073 4.073 12 C -0.067 4.067 13 N -0.259 5.259 14 C -0.028 4.028 15 C -0.095 4.095 16 C -0.084 4.084 17 C -0.173 4.173 18 C -0.102 4.102 19 C -0.227 4.227 20 C 0.088 3.912 21 O -0.199 6.199 22 C -0.010 4.010 23 C 0.315 3.685 24 O -0.359 6.359 25 O -0.329 6.329 26 C -0.067 4.067 27 C -0.060 4.060 28 H 0.072 0.928 29 H 0.006 0.994 30 H 0.041 0.959 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.121 0.879 42 H 0.125 0.875 43 H 0.281 0.719 44 H 0.070 0.930 45 H 0.093 0.907 46 H 0.042 0.958 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.958 -20.011 8.691 24.414 hybrid contribution -0.231 1.007 -0.215 1.056 sum 10.726 -19.003 8.476 23.410 Atomic orbital electron populations 1.69901 1.06111 1.26698 1.51496 1.24894 0.94724 0.98791 0.94947 0.86863 0.80342 0.84031 0.78550 1.20184 1.21266 1.19266 1.21055 0.88820 0.94661 1.49825 0.90234 1.20148 0.97003 0.84323 0.94939 1.62086 1.10323 1.18770 1.34070 1.22092 0.90239 0.94816 1.00203 1.22125 0.99214 0.94987 0.90354 1.62299 1.15713 1.13436 1.34498 1.20849 1.00428 0.89385 0.92154 1.19180 0.90607 1.01828 0.97918 1.20886 0.97870 0.96710 0.92957 1.21059 0.97742 1.01894 0.96623 1.20900 0.92305 0.98050 0.98949 1.21200 1.00551 1.06867 0.94130 1.18737 0.86667 0.96520 0.89305 1.86310 1.15400 1.77522 1.40630 1.21787 0.82385 1.01942 0.94874 1.22521 0.82704 0.75446 0.87783 1.90862 1.81408 1.38209 1.25464 1.84377 1.20204 1.77955 1.50404 1.22427 0.85925 0.96913 1.01434 1.22036 1.01335 0.92288 0.90310 0.92777 0.99443 0.95912 0.95256 0.91114 0.91284 0.94146 0.90380 0.93523 0.85238 0.85919 0.85843 0.85408 0.87865 0.87473 0.71880 0.92993 0.90716 0.95830 0.89576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.31 13.96 55.43 0.77 -27.54 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 3 Si 0.87 22.20 27.47 -169.99 -4.67 17.53 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.27 -6.61 6.54 56.52 0.37 -6.24 16 7 C -0.51 -14.99 9.03 -34.44 -0.31 -15.31 16 8 H 0.08 2.58 7.37 -52.49 -0.39 2.20 16 9 C 0.16 4.19 3.79 -4.98 -0.02 4.17 16 10 N -0.53 -12.10 4.70 -235.92 -1.11 -13.21 16 11 C 0.06 1.05 5.61 -3.77 -0.02 1.03 16 12 C 0.06 0.99 5.61 -3.77 -0.02 0.97 16 13 N -0.53 -8.64 4.70 -235.91 -1.11 -9.75 16 14 C 0.10 1.32 4.99 -4.98 -0.02 1.30 16 15 C -0.09 -1.15 5.18 -104.48 -0.54 -1.70 16 16 C -0.07 -0.68 9.67 -39.60 -0.38 -1.06 16 17 C -0.15 -1.39 10.04 -39.56 -0.40 -1.79 16 18 C -0.08 -0.72 10.04 -39.60 -0.40 -1.12 16 19 C -0.21 -1.97 9.04 -39.43 -0.36 -2.33 16 20 C 0.13 1.58 5.41 -39.22 -0.21 1.36 16 21 O -0.29 -3.66 5.77 -39.37 -0.23 -3.89 16 22 C 0.07 0.63 5.33 36.01 0.19 0.82 16 23 C 0.48 5.65 8.40 36.01 0.30 5.95 16 24 O -0.48 -7.97 17.20 -25.47 -0.44 -8.41 16 25 O -0.52 -4.54 13.42 -39.25 -0.53 -5.07 16 26 C 0.06 1.11 4.15 -3.77 -0.02 1.09 16 27 C 0.07 1.49 5.43 -3.76 -0.02 1.47 16 28 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 29 H -0.01 -0.32 7.18 -51.93 -0.37 -0.69 16 30 H 0.02 0.58 7.45 -51.93 -0.39 0.20 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 33 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.88 7.89 -51.93 -0.41 0.47 16 36 H 0.05 0.68 7.83 -51.93 -0.41 0.27 16 37 H 0.13 1.12 8.04 -52.49 -0.42 0.70 16 38 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 40 H 0.13 0.88 6.30 -52.49 -0.33 0.55 16 41 H 0.10 0.65 7.66 -51.93 -0.40 0.25 16 42 H 0.11 0.83 7.66 -51.93 -0.40 0.43 16 43 H 0.42 2.30 9.10 45.56 0.41 2.72 16 44 H 0.05 1.08 7.83 -51.93 -0.41 0.67 16 45 H 0.07 1.29 4.69 -51.93 -0.24 1.05 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.09 2.06 6.79 -51.93 -0.35 1.71 16 LS Contribution 375.94 15.07 5.67 5.67 Total: -1.00 -36.72 375.94 -10.18 -46.90 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.22 Total: 0.99 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -2.32 Total: -3.22 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: -1.44 Total: -50.50 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -1.19 Total: -17.36 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.72 -10.18 -46.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231792281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.014 kcal (2) G-P(sol) polarization free energy of solvation -36.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds