Wall clock time and date at job start Tue Mar 31 2020 23:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99847 * 2 1 4 4 H 1.48499 * 109.46978 * 269.99601 * 3 2 1 5 5 H 1.48495 * 109.47506 * 29.99654 * 3 2 1 6 6 H 1.48500 * 109.47161 * 149.99648 * 3 2 1 7 7 C 1.37880 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99413 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00085 * 180.02562 * 7 2 1 10 10 N 1.46896 * 109.46981 * 180.02562 * 9 7 2 11 11 C 1.46955 * 111.00049 * 169.99525 * 10 9 7 12 12 C 1.53049 * 109.36436 * 183.18539 * 11 10 9 13 13 N 1.46956 * 109.36632 * 301.60352 * 12 11 10 14 14 C 1.46900 * 111.00164 * 183.19000 * 13 12 11 15 15 C 1.50693 * 109.47672 * 169.99782 * 14 13 12 16 16 C 1.38169 * 120.02813 * 260.00091 * 15 14 13 17 17 C 1.38243 * 120.05455 * 179.97438 * 16 15 14 18 18 C 1.38295 * 120.11401 * 0.04496 * 17 16 15 19 19 C 1.38122 * 120.05026 * 359.97438 * 18 17 16 20 20 C 1.38712 * 120.02675 * 79.97324 * 15 14 13 21 21 O 1.35897 * 120.05621 * 0.04919 * 20 15 14 22 22 C 1.42904 * 116.99781 * 179.97438 * 21 20 15 23 23 C 1.50703 * 109.46628 * 180.02562 * 22 21 20 24 24 O 1.20820 * 120.00270 * 359.97438 * 23 22 21 25 25 O 1.34228 * 119.99734 * 180.02562 * 23 22 21 26 26 C 1.46952 * 110.88403 * 59.32154 * 13 12 11 27 27 C 1.46956 * 110.99893 * 293.79820 * 10 9 7 28 28 H 0.97000 * 119.99792 * 0.02562 * 1 2 3 29 29 H 1.08991 * 109.47151 * 59.99712 * 9 7 2 30 30 H 1.08999 * 109.46869 * 299.99958 * 9 7 2 31 31 H 1.09004 * 109.48349 * 63.22280 * 11 10 9 32 32 H 1.08997 * 109.49313 * 303.15838 * 11 10 9 33 33 H 1.08999 * 109.49073 * 181.63448 * 12 11 10 34 34 H 1.09004 * 109.48980 * 61.57116 * 12 11 10 35 35 H 1.09000 * 109.46954 * 49.99406 * 14 13 12 36 36 H 1.09004 * 109.47193 * 290.00050 * 14 13 12 37 37 H 1.07998 * 119.97356 * 359.97438 * 16 15 14 38 38 H 1.07997 * 119.94707 * 180.02562 * 17 16 15 39 39 H 1.07997 * 119.97026 * 179.70067 * 18 17 16 40 40 H 1.08002 * 120.02294 * 179.97438 * 19 18 17 41 41 H 1.08993 * 109.47145 * 299.99865 * 22 21 20 42 42 H 1.08996 * 109.47124 * 60.00356 * 22 21 20 43 43 H 0.96700 * 117.00449 * 179.97438 * 25 23 22 44 44 H 1.08998 * 109.48917 * 60.64050 * 26 13 12 45 45 H 1.08998 * 109.48868 * 180.71842 * 26 13 12 46 46 H 1.08998 * 109.48931 * 296.77707 * 27 10 9 47 47 H 1.08996 * 109.48944 * 56.84745 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 4.0012 -2.5790 0.0010 11 6 5.4507 -2.6251 -0.2368 12 6 5.9070 -4.0842 -0.3085 13 7 5.5601 -4.7655 0.9465 14 6 6.0498 -6.1505 0.9465 15 6 5.8973 -6.7374 2.3260 16 6 6.9867 -6.8044 3.1732 17 6 6.8473 -7.3422 4.4391 18 6 5.6180 -7.8152 4.8605 19 6 4.5260 -7.7508 4.0172 20 6 4.6630 -7.2102 2.7466 21 8 3.5900 -7.1458 1.9151 22 6 2.3506 -7.6519 2.4149 23 6 1.2840 -7.4984 1.3613 24 8 1.5571 -7.0056 0.2925 25 8 0.0304 -7.9081 1.6108 26 6 4.1107 -4.7195 1.1843 27 6 3.6543 -3.2603 1.2560 28 1 -0.4850 0.8401 -0.0004 29 1 3.8745 -0.6800 0.8910 30 1 3.8752 -0.6804 -0.8888 31 1 5.9692 -2.1216 0.5792 32 1 5.6810 -2.1254 -1.1777 33 1 6.9864 -4.1209 -0.4559 34 1 5.4089 -4.5805 -1.1414 35 1 7.1014 -6.1640 0.6601 36 1 5.4719 -6.7402 0.2348 37 1 7.9480 -6.4364 2.8462 38 1 7.6999 -7.3934 5.1000 39 1 5.5128 -8.2393 5.8481 40 1 3.5663 -8.1207 4.3466 41 1 2.4636 -8.7065 2.6659 42 1 2.0638 -7.0948 3.3067 43 1 -0.6193 -7.7886 0.9047 44 1 3.5922 -5.2229 0.3683 45 1 3.8805 -5.2191 2.1252 46 1 4.1525 -2.7641 2.0889 47 1 2.5750 -3.2237 1.4034 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231792281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:17 Heat of formation + Delta-G solvation = -97.985345 kcal Electronic energy + Delta-G solvation = -29863.941728 eV Core-core repulsion = 25818.664941 eV Total energy + Delta-G solvation = -4045.276787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 6.23 seconds Orbital eigenvalues (eV) -41.84528 -40.98574 -39.89986 -38.42964 -37.13659 -36.74797 -34.65932 -32.83628 -31.82056 -31.24363 -30.44711 -29.62000 -27.52655 -25.14846 -24.72186 -23.84543 -22.97592 -22.33273 -21.96944 -20.64427 -19.50771 -18.97829 -18.56994 -18.03415 -17.93536 -17.19026 -16.70319 -16.58479 -16.41657 -16.08553 -15.86525 -15.70911 -15.41816 -15.17433 -15.10958 -14.83094 -14.56430 -14.42691 -13.73548 -13.57002 -13.54244 -13.50742 -13.17228 -12.95447 -12.74694 -12.66304 -12.37293 -12.25240 -12.21025 -12.18670 -12.01178 -11.82904 -11.79651 -11.54789 -11.36908 -11.34299 -10.80441 -9.80301 -9.36223 -9.10770 -9.01043 -8.31060 -6.34971 0.41588 0.51911 1.07371 1.32285 1.32686 1.34386 1.45687 2.32407 2.66244 2.73676 3.01287 3.18872 3.22336 3.76163 3.86930 3.92720 3.99207 4.01596 4.09629 4.21435 4.22217 4.30851 4.39116 4.40875 4.48224 4.52449 4.61624 4.65096 4.70756 4.78763 4.86187 4.90912 4.94571 5.02158 5.08879 5.11925 5.19932 5.39184 5.49766 5.51840 5.56085 5.67135 5.88101 5.92033 6.04353 6.13389 6.34210 6.37566 6.64422 6.70134 6.86930 7.28466 8.86029 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010923 B = 0.003771 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.671430 B = 7423.864959 C = 8951.267723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.009 3.991 3 Si 0.952 3.048 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.253 1.253 7 C -0.519 4.519 8 H 0.029 0.971 9 C 0.174 3.826 10 N -0.548 5.548 11 C 0.054 3.946 12 C 0.065 3.935 13 N -0.534 5.534 14 C 0.104 3.896 15 C -0.123 4.123 16 C -0.070 4.070 17 C -0.157 4.157 18 C -0.082 4.082 19 C -0.211 4.211 20 C 0.112 3.888 21 O -0.316 6.316 22 C 0.063 3.937 23 C 0.479 3.521 24 O -0.537 6.537 25 O -0.503 6.503 26 C 0.085 3.915 27 C 0.075 3.925 28 H 0.268 0.732 29 H -0.014 1.014 30 H 0.031 0.969 31 H 0.034 0.966 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.025 0.975 35 H 0.103 0.897 36 H 0.027 0.973 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.141 0.859 42 H 0.127 0.873 43 H 0.434 0.566 44 H 0.020 0.980 45 H 0.086 0.914 46 H 0.022 0.978 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.644 -20.644 10.809 27.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.189 4.189 3 Si 0.775 3.225 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.177 1.177 7 C -0.557 4.557 8 H 0.048 0.952 9 C 0.047 3.953 10 N -0.273 5.273 11 C -0.074 4.074 12 C -0.063 4.063 13 N -0.259 5.259 14 C -0.022 4.022 15 C -0.124 4.124 16 C -0.088 4.088 17 C -0.175 4.175 18 C -0.101 4.101 19 C -0.229 4.229 20 C 0.067 3.933 21 O -0.230 6.230 22 C -0.013 4.013 23 C 0.321 3.679 24 O -0.426 6.426 25 O -0.318 6.318 26 C -0.043 4.043 27 C -0.053 4.053 28 H 0.077 0.923 29 H 0.004 0.996 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.101 0.899 33 H 0.127 0.873 34 H 0.044 0.956 35 H 0.121 0.879 36 H 0.045 0.955 37 H 0.162 0.838 38 H 0.165 0.835 39 H 0.170 0.830 40 H 0.170 0.830 41 H 0.159 0.841 42 H 0.145 0.855 43 H 0.297 0.703 44 H 0.039 0.961 45 H 0.104 0.896 46 H 0.040 0.960 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.827 -20.379 10.597 26.810 hybrid contribution -1.219 0.950 -0.739 1.714 sum 12.608 -19.429 9.858 25.172 Atomic orbital electron populations 1.70058 1.08154 1.28195 1.52456 1.25876 0.95672 1.03209 0.94103 0.85648 0.79214 0.78248 0.79412 1.18722 1.20328 1.17706 1.21220 0.91098 0.93089 1.50272 0.95246 1.19908 0.94261 0.86247 0.94922 1.62003 1.13505 1.17111 1.34711 1.22234 0.87296 0.97062 1.00858 1.22155 1.01290 0.92953 0.89880 1.62333 1.13558 1.15628 1.34369 1.20864 1.01141 0.87130 0.93100 1.19258 0.91783 1.03575 0.97765 1.21113 0.97835 0.96599 0.93288 1.21417 0.98831 1.00869 0.96354 1.21324 0.91817 0.96989 0.99922 1.21516 1.02119 1.06143 0.93141 1.19002 0.86355 0.97645 0.90275 1.86247 1.16530 1.78309 1.41938 1.22099 0.80746 1.04344 0.94083 1.23154 0.83631 0.73719 0.87390 1.90846 1.82435 1.41237 1.28099 1.84360 1.19568 1.77027 1.50819 1.22068 0.87446 0.93852 1.00891 1.21909 0.99005 0.94515 0.89905 0.92324 0.99604 0.95112 0.94765 0.89912 0.87287 0.95628 0.87857 0.95492 0.83785 0.83451 0.82993 0.83008 0.84134 0.85543 0.70346 0.96132 0.89567 0.96001 0.93502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.44 13.96 21.45 0.30 -61.14 16 2 C 0.01 0.52 5.47 84.66 0.46 0.99 16 3 Si 0.95 45.89 27.47 68.60 1.88 47.78 16 4 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.25 -11.54 6.54 99.48 0.65 -10.89 16 7 C -0.52 -32.21 9.03 25.60 0.23 -31.98 16 8 H 0.03 2.06 7.37 -2.91 -0.02 2.04 16 9 C 0.17 9.10 3.79 85.56 0.32 9.42 16 10 N -0.55 -25.87 4.70 -900.31 -4.23 -30.10 16 11 C 0.05 1.98 5.61 86.31 0.48 2.46 16 12 C 0.07 2.03 5.61 86.31 0.48 2.51 16 13 N -0.53 -17.04 4.70 -900.29 -4.23 -21.27 16 14 C 0.10 2.71 4.99 85.55 0.43 3.14 16 15 C -0.12 -2.86 5.18 -19.77 -0.10 -2.96 16 16 C -0.07 -1.27 9.67 22.25 0.22 -1.05 16 17 C -0.16 -2.28 10.04 22.28 0.22 -2.06 16 18 C -0.08 -1.14 10.04 22.26 0.22 -0.92 16 19 C -0.21 -3.45 9.04 22.37 0.20 -3.25 16 20 C 0.11 2.55 5.41 22.51 0.12 2.67 16 21 O -0.32 -8.26 5.77 -73.31 -0.42 -8.69 16 22 C 0.06 1.16 5.33 71.24 0.38 1.54 16 23 C 0.48 11.90 8.40 71.24 0.60 12.50 16 24 O -0.54 -19.62 17.20 28.42 0.49 -19.14 16 25 O -0.50 -8.94 13.42 -51.39 -0.69 -9.63 16 26 C 0.09 3.27 4.15 86.31 0.36 3.63 16 27 C 0.08 3.43 5.43 86.31 0.47 3.90 16 28 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 29 H -0.01 -0.71 7.18 -2.39 -0.02 -0.73 16 30 H 0.03 1.56 7.45 -2.39 -0.02 1.54 16 31 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.08 2.83 8.07 -2.39 -0.02 2.81 16 33 H 0.11 2.56 8.07 -2.39 -0.02 2.54 16 34 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.10 2.10 7.89 -2.39 -0.02 2.08 16 36 H 0.03 0.80 7.83 -2.39 -0.02 0.79 16 37 H 0.14 2.06 8.04 -2.91 -0.02 2.03 16 38 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 39 H 0.15 1.20 8.06 -2.91 -0.02 1.17 16 40 H 0.15 1.60 6.30 -2.91 -0.02 1.58 16 41 H 0.14 1.49 7.66 -2.39 -0.02 1.47 16 42 H 0.13 1.82 7.66 -2.39 -0.02 1.80 16 43 H 0.43 5.03 9.10 -74.06 -0.67 4.36 16 44 H 0.02 0.92 7.83 -2.39 -0.02 0.90 16 45 H 0.09 3.10 4.69 -2.39 -0.01 3.09 16 46 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.05 2.45 6.79 -2.39 -0.02 2.43 16 Total: -1.00 -84.98 375.94 -1.54 -86.52 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.26 Total: 15.11 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 5.10 Total: 0.54 kcal Atomic # 7 Polarization: -104.34 SS G_CDS: -8.16 Total: -112.51 kcal Atomic # 8 Polarization: -36.83 SS G_CDS: -0.62 Total: -37.45 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.88 Total: 47.78 kcal Total: -84.98 -1.54 -86.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231792281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.460 kcal (2) G-P(sol) polarization free energy of solvation -84.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.23 seconds