Wall clock time and date at job start Tue Mar 31 2020 22:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99761 * 2 1 4 4 H 1.48497 * 109.46922 * 268.06320 * 3 2 1 5 5 H 1.48497 * 109.47245 * 28.06378 * 3 2 1 6 6 H 1.48503 * 109.47095 * 148.06554 * 3 2 1 7 7 C 1.37870 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00544 * 6.56034 * 7 2 1 9 9 C 1.50703 * 119.99786 * 186.54933 * 7 2 1 10 10 N 1.46906 * 110.01345 * 61.83414 * 9 7 2 11 11 C 1.46905 * 111.00069 * 57.41752 * 10 9 7 12 12 C 1.53039 * 109.46086 * 257.72341 * 11 10 9 13 13 C 1.53191 * 109.31216 * 178.59950 * 12 11 10 14 14 N 1.46931 * 108.76040 * 54.65671 * 13 12 11 15 15 C 1.34780 * 120.62885 * 126.40446 * 14 13 12 16 16 O 1.21277 * 119.99773 * 179.97438 * 15 14 13 17 17 C 1.50694 * 119.99964 * 359.97438 * 15 14 13 18 18 F 1.39900 * 109.47304 * 179.97438 * 17 15 14 19 19 F 1.39900 * 109.47208 * 299.99907 * 17 15 14 20 20 F 1.39908 * 109.47578 * 59.99673 * 17 15 14 21 21 C 1.46923 * 118.73965 * 306.37792 * 14 13 12 22 22 C 1.53035 * 109.45748 * 137.66590 * 11 10 9 23 23 C 1.54265 * 110.07839 * 300.41237 * 9 7 2 24 24 C 1.54883 * 104.19824 * 264.30335 * 23 9 7 25 25 C 1.54896 * 102.74817 * 322.05632 * 24 23 9 26 26 C 1.53876 * 110.02884 * 183.22002 * 9 7 2 27 27 H 0.96999 * 120.00129 * 0.02562 * 1 2 3 28 28 H 1.00900 * 110.99934 * 181.36927 * 10 9 7 29 29 H 1.09007 * 109.45576 * 17.69788 * 11 10 9 30 30 H 1.08998 * 109.49229 * 298.56875 * 12 11 10 31 31 H 1.09000 * 109.49805 * 58.66326 * 12 11 10 32 32 H 1.08992 * 109.59962 * 294.87215 * 13 12 11 33 33 H 1.08992 * 109.70172 * 174.50035 * 13 12 11 34 34 H 1.08996 * 109.58967 * 293.82352 * 21 14 13 35 35 H 1.09004 * 109.70384 * 173.47111 * 21 14 13 36 36 H 1.08999 * 109.50149 * 301.33945 * 22 11 10 37 37 H 1.09000 * 109.49916 * 61.43966 * 22 11 10 38 38 H 1.08995 * 110.48560 * 145.62012 * 23 9 7 39 39 H 1.09005 * 110.48362 * 22.98457 * 23 9 7 40 40 H 1.08994 * 110.75637 * 203.74057 * 24 23 9 41 41 H 1.09009 * 110.75626 * 80.36785 * 24 23 9 42 42 H 1.08997 * 110.48301 * 156.61786 * 25 24 23 43 43 H 1.08997 * 110.48375 * 279.13166 * 25 24 23 44 44 H 1.08993 * 110.03515 * 0.05580 * 26 9 7 45 45 H 1.09005 * 110.07405 * 238.64189 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5375 2.0228 -1.3993 5 1 1.4267 2.6642 0.6586 6 1 3.5256 1.4524 0.7406 7 6 2.0045 -1.1940 0.0005 8 1 1.4699 -2.1263 -0.1059 9 6 3.5041 -1.1982 0.1494 10 7 3.8824 -0.6179 1.4449 11 6 3.2541 -1.3495 2.5531 12 6 2.0577 -0.5520 3.0772 13 6 1.3841 -1.3341 4.2091 14 7 2.3923 -1.6502 5.2302 15 6 2.1904 -1.3178 6.5206 16 8 3.0301 -1.5846 7.3540 17 6 0.9214 -0.6145 6.9278 18 9 0.9415 -0.3771 8.3064 19 9 0.8235 0.6031 6.2459 20 9 -0.1795 -1.4170 6.6094 21 6 3.6244 -2.3361 4.8178 22 6 4.2727 -1.5430 3.6787 23 6 4.1525 -0.3967 -0.9982 24 6 4.5255 -1.4717 -2.0489 25 6 4.9965 -2.6582 -1.1716 26 6 4.0407 -2.6361 0.0391 27 1 -0.4850 0.8400 -0.0004 28 1 4.8855 -0.5929 1.5509 29 1 2.9147 -2.3231 2.1992 30 1 2.4000 0.4118 3.4540 31 1 1.3434 -0.3943 2.2691 32 1 0.9619 -2.2581 3.8143 33 1 0.5922 -0.7304 4.6523 34 1 3.3848 -3.3418 4.4725 35 1 4.3128 -2.3937 5.6610 36 1 5.1351 -2.0906 3.2988 37 1 4.5938 -0.5698 4.0500 38 1 5.0459 0.1189 -0.6461 39 1 3.4403 0.3147 -1.4165 40 1 5.3339 -1.1208 -2.6903 41 1 3.6544 -1.7513 -2.6415 42 1 4.9002 -3.5972 -1.7165 43 1 6.0270 -2.5089 -0.8495 44 1 3.2166 -3.3308 -0.1230 45 1 4.5817 -2.9042 0.9467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255980024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:54 Heat of formation + Delta-G solvation = -169.202840 kcal Electronic energy + Delta-G solvation = -31596.264424 eV Core-core repulsion = 27006.042674 eV Total energy + Delta-G solvation = -4590.221749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.43197 -47.90791 -47.87962 -40.30482 -38.69917 -37.13592 -34.12090 -32.47131 -31.15202 -30.51437 -28.30632 -27.91870 -26.74725 -24.36032 -23.34404 -22.99999 -21.30792 -20.46473 -19.59412 -18.93197 -18.77350 -18.68256 -17.94047 -16.53205 -16.30966 -15.44944 -15.37095 -15.09565 -14.98036 -14.72776 -14.56759 -14.39079 -14.27634 -14.14367 -13.97980 -13.85140 -13.57320 -13.45573 -13.10982 -12.93199 -12.79271 -12.54102 -12.25556 -11.92042 -11.63951 -11.20659 -11.10894 -11.04521 -10.61765 -10.55895 -10.44314 -10.25606 -10.20995 -9.87305 -9.82346 -9.70594 -9.39372 -9.08912 -8.92737 -8.40563 -7.18822 -6.10117 -4.15137 1.71582 1.85765 2.94351 3.39876 3.46567 3.53997 3.76956 3.91197 4.05948 4.56849 4.77169 4.87804 5.02252 5.16870 5.22961 5.38035 5.43347 5.49472 5.53044 5.59768 5.66318 5.74392 5.97354 6.02325 6.04066 6.12865 6.21028 6.30674 6.36389 6.38516 6.44566 6.48357 6.53791 6.67345 6.79496 6.89753 6.91469 6.96524 7.09685 7.23753 7.42190 7.63685 7.98662 8.37508 8.61805 8.91943 9.56073 10.98515 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.016764 B = 0.004274 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.878134 B = 6549.806558 C = 7471.917552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.089 3.911 3 Si 0.872 3.128 4 H -0.298 1.298 5 H -0.310 1.310 6 H -0.211 1.211 7 C -0.503 4.503 8 H 0.070 0.930 9 C 0.209 3.791 10 N -0.674 5.674 11 C 0.110 3.890 12 C -0.127 4.127 13 C 0.091 3.909 14 N -0.574 5.574 15 C 0.481 3.519 16 O -0.497 6.497 17 C 0.450 3.550 18 F -0.158 7.158 19 F -0.163 7.163 20 F -0.167 7.167 21 C 0.116 3.884 22 C -0.147 4.147 23 C -0.120 4.120 24 C -0.116 4.116 25 C -0.120 4.120 26 C -0.136 4.136 27 H 0.263 0.737 28 H 0.311 0.689 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.123 0.877 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.045 0.955 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.062 0.938 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.892 -3.507 7.901 10.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.115 4.115 3 Si 0.701 3.299 4 H -0.227 1.227 5 H -0.239 1.239 6 H -0.133 1.133 7 C -0.541 4.541 8 H 0.088 0.912 9 C 0.121 3.879 10 N -0.303 5.303 11 C 0.000 4.000 12 C -0.166 4.166 13 C -0.031 4.031 14 N -0.306 5.306 15 C 0.261 3.739 16 O -0.372 6.372 17 C 0.392 3.608 18 F -0.139 7.139 19 F -0.145 7.145 20 F -0.148 7.148 21 C -0.005 4.005 22 C -0.186 4.186 23 C -0.158 4.158 24 C -0.154 4.154 25 C -0.158 4.158 26 C -0.176 4.176 27 H 0.072 0.928 28 H 0.129 0.871 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.141 0.859 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.690 -3.062 8.328 10.541 hybrid contribution 0.414 0.326 -0.065 0.531 sum 6.103 -2.736 8.263 10.631 Atomic orbital electron populations 1.69964 1.06649 1.27278 1.49428 1.24924 0.94353 0.99484 0.92707 0.87209 0.83423 0.82009 0.77240 1.22667 1.23909 1.13304 1.20757 0.87964 0.94241 1.51186 0.91186 1.19634 0.96078 0.87290 0.84941 1.61324 1.11051 1.55535 1.02426 1.21097 0.92937 0.96759 0.89199 1.22208 0.99635 0.97362 0.97352 1.22378 0.89840 1.01736 0.89109 1.48308 1.21138 1.55312 1.05827 1.20230 0.87116 0.82000 0.84595 1.90815 1.42988 1.53399 1.49980 1.20278 0.85886 0.78448 0.76164 1.93240 1.96534 1.94374 1.29742 1.93273 1.96433 1.45590 1.79163 1.93262 1.56127 1.73080 1.92346 1.21783 0.84744 0.95511 0.98495 1.22411 0.99025 1.00835 0.96323 1.22689 0.98756 0.97602 0.96737 1.22364 0.99778 0.95840 0.97379 1.22280 0.98237 0.97946 0.97343 1.22862 0.97918 1.00842 0.95941 0.92773 0.87111 0.91990 0.92527 0.85867 0.89555 0.90012 0.90339 0.88898 0.90797 0.91100 0.93634 0.91725 0.93267 0.91329 0.93046 0.93073 0.91932 0.93963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.78 13.96 55.43 0.77 -24.01 16 2 C 0.09 2.27 3.46 -17.82 -0.06 2.21 16 3 Si 0.87 20.53 23.49 -169.99 -3.99 16.54 16 4 H -0.30 -7.21 6.83 56.52 0.39 -6.83 16 5 H -0.31 -7.72 7.11 56.52 0.40 -7.32 16 6 H -0.21 -4.62 5.40 56.52 0.31 -4.31 16 7 C -0.50 -12.07 6.90 -34.44 -0.24 -12.31 16 8 H 0.07 1.89 7.57 -52.49 -0.40 1.49 16 9 C 0.21 4.10 0.34 -131.63 -0.05 4.05 16 10 N -0.67 -12.10 3.32 -93.03 -0.31 -12.41 16 11 C 0.11 1.80 1.43 -67.67 -0.10 1.70 16 12 C -0.13 -2.25 5.38 -26.61 -0.14 -2.39 16 13 C 0.09 1.36 5.82 -3.71 -0.02 1.34 16 14 N -0.57 -8.01 2.97 -172.77 -0.51 -8.53 16 15 C 0.48 7.08 7.27 -10.99 -0.08 7.00 16 16 O -0.50 -8.26 16.03 5.56 0.09 -8.17 16 17 C 0.45 6.22 2.79 36.00 0.10 6.32 16 18 F -0.16 -2.20 16.92 2.25 0.04 -2.16 16 19 F -0.16 -2.32 15.66 2.25 0.04 -2.28 16 20 F -0.17 -2.21 15.94 2.25 0.04 -2.18 16 21 C 0.12 1.44 6.43 -3.71 -0.02 1.42 16 22 C -0.15 -1.91 5.20 -26.61 -0.14 -2.05 16 23 C -0.12 -2.31 4.37 -25.08 -0.11 -2.42 16 24 C -0.12 -1.95 6.91 -24.74 -0.17 -2.12 16 25 C -0.12 -1.84 6.83 -25.07 -0.17 -2.01 16 26 C -0.14 -2.34 5.16 -25.61 -0.13 -2.47 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.31 5.03 8.04 -39.29 -0.32 4.71 16 29 H 0.06 1.09 6.37 -51.92 -0.33 0.76 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.12 2.68 4.90 -51.93 -0.25 2.42 16 32 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.08 1.19 4.65 -51.93 -0.24 0.95 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.09 1.13 7.01 -51.93 -0.36 0.77 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.04 0.82 7.94 -51.93 -0.41 0.40 16 39 H 0.06 1.42 4.14 -51.93 -0.21 1.20 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.23 8.14 -51.92 -0.42 0.80 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 1.17 7.37 -51.93 -0.38 0.78 16 45 H 0.04 0.66 7.24 -51.93 -0.38 0.28 16 LS Contribution 342.74 15.07 5.17 5.17 Total: -1.00 -26.83 342.74 -6.35 -33.18 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.34 Total: 6.59 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -1.33 Total: -1.74 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: -0.05 Total: -44.95 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.09 Total: -8.17 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 0.11 Total: -6.62 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -3.99 Total: 16.54 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -26.83 -6.35 -33.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255980024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.020 kcal (2) G-P(sol) polarization free energy of solvation -26.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds