Wall clock time and date at job start Tue Mar 31 2020 22:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99761 * 2 1 4 4 H 1.48497 * 109.46922 * 268.06320 * 3 2 1 5 5 H 1.48497 * 109.47245 * 28.06378 * 3 2 1 6 6 H 1.48503 * 109.47095 * 148.06554 * 3 2 1 7 7 C 1.37870 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00544 * 6.56034 * 7 2 1 9 9 C 1.50703 * 119.99786 * 186.54933 * 7 2 1 10 10 N 1.46906 * 110.01345 * 61.83414 * 9 7 2 11 11 C 1.46905 * 111.00069 * 57.41752 * 10 9 7 12 12 C 1.53039 * 109.46086 * 257.72341 * 11 10 9 13 13 C 1.53191 * 109.31216 * 178.59950 * 12 11 10 14 14 N 1.46931 * 108.76040 * 54.65671 * 13 12 11 15 15 C 1.34780 * 120.62885 * 126.40446 * 14 13 12 16 16 O 1.21277 * 119.99773 * 179.97438 * 15 14 13 17 17 C 1.50694 * 119.99964 * 359.97438 * 15 14 13 18 18 F 1.39900 * 109.47304 * 179.97438 * 17 15 14 19 19 F 1.39900 * 109.47208 * 299.99907 * 17 15 14 20 20 F 1.39908 * 109.47578 * 59.99673 * 17 15 14 21 21 C 1.46923 * 118.73965 * 306.37792 * 14 13 12 22 22 C 1.53035 * 109.45748 * 137.66590 * 11 10 9 23 23 C 1.54265 * 110.07839 * 300.41237 * 9 7 2 24 24 C 1.54883 * 104.19824 * 264.30335 * 23 9 7 25 25 C 1.54896 * 102.74817 * 322.05632 * 24 23 9 26 26 C 1.53876 * 110.02884 * 183.22002 * 9 7 2 27 27 H 0.96999 * 120.00129 * 0.02562 * 1 2 3 28 28 H 1.00900 * 110.99934 * 181.36927 * 10 9 7 29 29 H 1.09007 * 109.45576 * 17.69788 * 11 10 9 30 30 H 1.08998 * 109.49229 * 298.56875 * 12 11 10 31 31 H 1.09000 * 109.49805 * 58.66326 * 12 11 10 32 32 H 1.08992 * 109.59962 * 294.87215 * 13 12 11 33 33 H 1.08992 * 109.70172 * 174.50035 * 13 12 11 34 34 H 1.08996 * 109.58967 * 293.82352 * 21 14 13 35 35 H 1.09004 * 109.70384 * 173.47111 * 21 14 13 36 36 H 1.08999 * 109.50149 * 301.33945 * 22 11 10 37 37 H 1.09000 * 109.49916 * 61.43966 * 22 11 10 38 38 H 1.08995 * 110.48560 * 145.62012 * 23 9 7 39 39 H 1.09005 * 110.48362 * 22.98457 * 23 9 7 40 40 H 1.08994 * 110.75637 * 203.74057 * 24 23 9 41 41 H 1.09009 * 110.75626 * 80.36785 * 24 23 9 42 42 H 1.08997 * 110.48301 * 156.61786 * 25 24 23 43 43 H 1.08997 * 110.48375 * 279.13166 * 25 24 23 44 44 H 1.08993 * 110.03515 * 0.05580 * 26 9 7 45 45 H 1.09005 * 110.07405 * 238.64189 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5375 2.0228 -1.3993 5 1 1.4267 2.6642 0.6586 6 1 3.5256 1.4524 0.7406 7 6 2.0045 -1.1940 0.0005 8 1 1.4699 -2.1263 -0.1059 9 6 3.5041 -1.1982 0.1494 10 7 3.8824 -0.6179 1.4449 11 6 3.2541 -1.3495 2.5531 12 6 2.0577 -0.5520 3.0772 13 6 1.3841 -1.3341 4.2091 14 7 2.3923 -1.6502 5.2302 15 6 2.1904 -1.3178 6.5206 16 8 3.0301 -1.5846 7.3540 17 6 0.9214 -0.6145 6.9278 18 9 0.9415 -0.3771 8.3064 19 9 0.8235 0.6031 6.2459 20 9 -0.1795 -1.4170 6.6094 21 6 3.6244 -2.3361 4.8178 22 6 4.2727 -1.5430 3.6787 23 6 4.1525 -0.3967 -0.9982 24 6 4.5255 -1.4717 -2.0489 25 6 4.9965 -2.6582 -1.1716 26 6 4.0407 -2.6361 0.0391 27 1 -0.4850 0.8400 -0.0004 28 1 4.8855 -0.5929 1.5509 29 1 2.9147 -2.3231 2.1992 30 1 2.4000 0.4118 3.4540 31 1 1.3434 -0.3943 2.2691 32 1 0.9619 -2.2581 3.8143 33 1 0.5922 -0.7304 4.6523 34 1 3.3848 -3.3418 4.4725 35 1 4.3128 -2.3937 5.6610 36 1 5.1351 -2.0906 3.2988 37 1 4.5938 -0.5698 4.0500 38 1 5.0459 0.1189 -0.6461 39 1 3.4403 0.3147 -1.4165 40 1 5.3339 -1.1208 -2.6903 41 1 3.6544 -1.7513 -2.6415 42 1 4.9002 -3.5972 -1.7165 43 1 6.0270 -2.5089 -0.8495 44 1 3.2166 -3.3308 -0.1230 45 1 4.5817 -2.9042 0.9467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255980024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:53 Heat of formation + Delta-G solvation = -185.635562 kcal Electronic energy + Delta-G solvation = -31596.977000 eV Core-core repulsion = 27006.042674 eV Total energy + Delta-G solvation = -4590.934325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -51.55286 -49.02973 -48.99676 -41.50561 -40.11829 -38.41297 -35.42265 -34.33844 -32.38828 -31.86813 -29.70538 -29.22001 -28.23725 -25.88640 -24.63237 -24.30464 -22.53739 -21.80412 -20.83622 -20.27864 -20.04303 -19.90211 -19.12995 -18.10887 -17.71234 -17.05638 -16.65342 -16.39365 -16.14901 -15.92585 -15.71289 -15.66279 -15.49068 -15.38681 -15.24867 -15.09799 -14.79248 -14.75830 -14.66797 -14.34604 -14.07064 -14.01842 -13.65118 -13.29837 -13.01227 -12.79460 -12.65468 -12.24391 -12.06414 -11.95606 -11.89320 -11.75115 -11.54489 -11.30912 -11.20702 -11.17011 -11.10022 -10.85359 -10.38585 -10.05179 -8.66027 -8.12851 -6.16382 0.54178 0.72977 1.47090 1.58613 1.80855 1.84758 2.31373 2.60002 2.78161 2.93460 3.19626 3.56400 3.71535 3.91503 4.04837 4.07104 4.11982 4.21797 4.32290 4.36765 4.53195 4.64614 4.69507 4.73203 4.80938 4.86072 4.92282 4.99552 5.01634 5.08711 5.12639 5.17939 5.21202 5.27647 5.36517 5.53004 5.53569 5.64156 5.71288 5.78422 5.90749 6.22250 6.24832 6.75249 6.84277 7.21288 7.57662 8.99451 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.016764 B = 0.004274 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.878134 B = 6549.806558 C = 7471.917552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.052 3.948 3 Si 0.915 3.085 4 H -0.309 1.309 5 H -0.334 1.334 6 H -0.179 1.179 7 C -0.483 4.483 8 H 0.029 0.971 9 C 0.209 3.791 10 N -0.684 5.684 11 C 0.113 3.887 12 C -0.126 4.126 13 C 0.101 3.899 14 N -0.569 5.569 15 C 0.484 3.516 16 O -0.514 6.514 17 C 0.454 3.546 18 F -0.157 7.157 19 F -0.166 7.166 20 F -0.163 7.163 21 C 0.114 3.886 22 C -0.134 4.134 23 C -0.125 4.125 24 C -0.116 4.116 25 C -0.111 4.111 26 C -0.132 4.132 27 H 0.256 0.744 28 H 0.331 0.669 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.033 0.967 40 H 0.076 0.924 41 H 0.046 0.954 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.038 0.962 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.190 -4.366 8.663 13.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.147 4.147 3 Si 0.746 3.254 4 H -0.238 1.238 5 H -0.264 1.264 6 H -0.099 1.099 7 C -0.522 4.522 8 H 0.047 0.953 9 C 0.119 3.881 10 N -0.315 5.315 11 C 0.003 3.997 12 C -0.165 4.165 13 C -0.022 4.022 14 N -0.301 5.301 15 C 0.264 3.736 16 O -0.390 6.390 17 C 0.396 3.604 18 F -0.139 7.139 19 F -0.147 7.147 20 F -0.145 7.145 21 C -0.007 4.007 22 C -0.172 4.172 23 C -0.163 4.163 24 C -0.153 4.153 25 C -0.149 4.149 26 C -0.171 4.171 27 H 0.065 0.935 28 H 0.150 0.850 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.052 0.948 40 H 0.094 0.906 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.057 0.943 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.031 -3.941 9.086 13.403 hybrid contribution -0.660 0.532 -0.326 0.908 sum 8.370 -3.409 8.760 12.586 Atomic orbital electron populations 1.70090 1.08259 1.27204 1.52792 1.25401 0.94443 1.01812 0.93047 0.86597 0.83473 0.78811 0.76528 1.23789 1.26438 1.09933 1.20910 0.90612 0.91965 1.48672 0.95272 1.19505 0.93054 0.89482 0.86043 1.60991 1.12485 1.55976 1.02012 1.21052 0.93322 0.95392 0.89907 1.22061 0.99551 0.97901 0.96967 1.22165 0.89852 1.01530 0.88615 1.48316 1.21442 1.54986 1.05314 1.20253 0.87051 0.81739 0.84550 1.90810 1.43627 1.54249 1.50349 1.20166 0.85800 0.78307 0.76120 1.93241 1.96532 1.94367 1.29726 1.93272 1.96441 1.45781 1.79240 1.93272 1.55925 1.72957 1.92315 1.21972 0.84096 0.96008 0.98623 1.22288 0.98658 1.01353 0.94916 1.22681 0.98744 0.97797 0.97127 1.22365 0.99955 0.95817 0.97208 1.22253 0.98946 0.97753 0.95910 1.22745 0.97890 0.98250 0.98229 0.93535 0.84984 0.93252 0.93197 0.90047 0.89222 0.89944 0.88647 0.87958 0.87980 0.91286 0.91418 0.94831 0.90567 0.93483 0.91814 0.90266 0.94346 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.96 13.96 21.45 0.30 -54.66 16 2 C 0.05 2.72 3.46 84.65 0.29 3.02 16 3 Si 0.92 43.22 23.49 68.60 1.61 44.84 16 4 H -0.31 -14.95 6.83 99.48 0.68 -14.27 16 5 H -0.33 -16.93 7.11 99.48 0.71 -16.22 16 6 H -0.18 -7.41 5.40 99.48 0.54 -6.87 16 7 C -0.48 -23.76 6.90 25.60 0.18 -23.58 16 8 H 0.03 1.65 7.57 -2.91 -0.02 1.63 16 9 C 0.21 7.85 0.34 3.51 0.00 7.85 16 10 N -0.68 -22.82 3.32 -448.24 -1.49 -24.31 16 11 C 0.11 3.47 1.43 44.94 0.06 3.54 16 12 C -0.13 -4.43 5.38 30.67 0.16 -4.26 16 13 C 0.10 2.94 5.82 86.36 0.50 3.45 16 14 N -0.57 -14.82 2.97 -818.92 -2.43 -17.25 16 15 C 0.48 13.44 7.27 87.65 0.64 14.08 16 16 O -0.51 -16.07 16.03 -3.02 -0.05 -16.12 16 17 C 0.45 12.07 2.79 71.23 0.20 12.27 16 18 F -0.16 -4.22 16.92 44.97 0.76 -3.46 16 19 F -0.17 -4.59 15.66 44.97 0.70 -3.89 16 20 F -0.16 -4.19 15.94 44.97 0.72 -3.47 16 21 C 0.11 2.45 6.43 86.36 0.56 3.01 16 22 C -0.13 -2.98 5.20 30.67 0.16 -2.82 16 23 C -0.13 -4.56 4.37 31.67 0.14 -4.43 16 24 C -0.12 -3.58 6.91 31.89 0.22 -3.36 16 25 C -0.11 -2.96 6.83 31.67 0.22 -2.74 16 26 C -0.13 -4.18 5.16 31.32 0.16 -4.02 16 27 H 0.26 14.60 8.31 -92.71 -0.77 13.82 16 28 H 0.33 9.19 8.04 -89.69 -0.72 8.47 16 29 H 0.05 1.66 6.37 -2.38 -0.02 1.65 16 30 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.08 3.64 4.90 -2.39 -0.01 3.63 16 32 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.08 2.40 4.65 -2.39 -0.01 2.38 16 34 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.10 2.12 7.01 -2.38 -0.02 2.10 16 36 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.07 2.16 7.94 -2.39 -0.02 2.14 16 39 H 0.03 1.44 4.14 -2.38 -0.01 1.43 16 40 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.05 1.63 8.14 -2.38 -0.02 1.62 16 42 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.04 1.39 7.37 -2.39 -0.02 1.38 16 45 H 0.07 1.78 7.24 -2.38 -0.02 1.76 16 Total: -1.00 -60.76 342.74 3.73 -57.02 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.12 Total: 19.29 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 3.49 Total: 2.01 kcal Atomic # 7 Polarization: -92.60 SS G_CDS: -3.62 Total: -96.22 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.05 Total: -16.12 kcal Atomic # 9 Polarization: -13.00 SS G_CDS: 2.18 Total: -10.82 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.61 Total: 44.84 kcal Total: -60.76 3.73 -57.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255980024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.611 kcal (2) G-P(sol) polarization free energy of solvation -60.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds