Wall clock time and date at job start Tue Mar 31 2020 22:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86798 * 120.00337 * 2 1 4 4 H 1.48496 * 109.47436 * 269.99766 * 3 2 1 5 5 H 1.48505 * 109.47227 * 29.99684 * 3 2 1 6 6 H 1.48495 * 109.47530 * 149.99702 * 3 2 1 7 7 C 1.37884 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99872 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47319 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47157 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47140 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99836 * 180.02562 * 12 11 10 14 14 O 1.21343 * 120.00294 * 359.97438 * 13 12 11 15 15 C 1.49453 * 119.99565 * 179.97438 * 13 12 11 16 16 O 1.21347 * 120.00570 * 359.97438 * 15 13 12 17 17 N 1.34778 * 119.99565 * 179.97438 * 15 13 12 18 18 C 1.46500 * 119.99833 * 179.97438 * 17 15 13 19 19 C 1.53002 * 109.47476 * 180.02562 * 18 17 15 20 20 C 1.52998 * 109.47501 * 180.02562 * 19 18 17 21 21 C 1.50698 * 109.47322 * 179.97438 * 20 19 18 22 22 C 1.38269 * 119.94432 * 89.99694 * 21 20 19 23 23 C 1.38137 * 120.06013 * 180.02562 * 22 21 20 24 24 C 1.38737 * 119.94162 * 359.97438 * 23 22 21 25 25 O 1.35896 * 120.05545 * 180.02562 * 24 23 22 26 26 C 1.38734 * 119.88732 * 0.27760 * 24 23 22 27 27 C 1.38143 * 119.94306 * 359.42517 * 26 24 23 28 28 H 0.97004 * 120.00075 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46858 * 59.99722 * 9 7 2 30 30 H 1.08999 * 109.47119 * 300.00440 * 9 7 2 31 31 H 1.08997 * 109.46774 * 60.00063 * 10 9 7 32 32 H 1.08997 * 109.46991 * 300.00387 * 10 9 7 33 33 H 1.08997 * 109.47384 * 60.00244 * 11 10 9 34 34 H 1.09008 * 109.46893 * 300.00153 * 11 10 9 35 35 H 0.96996 * 119.99928 * 359.97438 * 12 11 10 36 36 H 0.96996 * 120.00235 * 359.97438 * 17 15 13 37 37 H 1.09000 * 109.47259 * 59.99989 * 18 17 15 38 38 H 1.08999 * 109.47530 * 300.00211 * 18 17 15 39 39 H 1.09000 * 109.46925 * 59.99736 * 19 18 17 40 40 H 1.09008 * 109.46725 * 300.00290 * 19 18 17 41 41 H 1.08997 * 109.47096 * 59.99673 * 20 19 18 42 42 H 1.09005 * 109.46515 * 299.99725 * 20 19 18 43 43 H 1.08008 * 119.96973 * 0.02562 * 22 21 20 44 44 H 1.07997 * 120.03660 * 179.97438 * 23 22 21 45 45 H 0.96700 * 114.00170 * 90.00174 * 25 24 23 46 46 H 1.07999 * 120.02623 * 179.72382 * 26 24 23 47 47 H 1.08005 * 119.97511 * 180.27480 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 -0.0001 12 7 2.4321 -6.1006 0.0005 13 6 1.9828 -7.3713 -0.0004 14 8 0.7898 -7.5930 -0.0013 15 6 2.9540 -8.5073 -0.0004 16 8 4.1470 -8.2856 0.0000 17 7 2.5046 -9.7779 -0.0008 18 6 3.4566 -10.8915 -0.0013 19 6 2.6916 -12.2165 -0.0023 20 6 3.6858 -13.3795 -0.0022 21 6 2.9323 -14.6846 -0.0026 22 6 2.5875 -15.2821 -1.2009 23 6 1.8964 -16.4781 -1.2041 24 6 1.5487 -17.0801 -0.0035 25 8 0.8692 -18.2570 -0.0038 26 6 1.8912 -16.4759 1.1975 27 6 2.5878 -15.2830 1.1952 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5570 -0.8897 30 1 0.6239 -2.5567 0.8902 31 1 2.8718 -3.6043 0.8905 32 1 2.8718 -3.6043 -0.8894 33 1 0.8538 -5.0446 -0.8903 34 1 0.8531 -5.0450 0.8897 35 1 3.3857 -5.9234 0.0008 36 1 1.5510 -9.9551 -0.0007 37 1 4.0834 -10.8341 0.8886 38 1 4.0832 -10.8335 -0.8913 39 1 2.0652 -12.2737 -0.8925 40 1 2.0647 -12.2748 0.8875 41 1 4.3120 -13.3221 0.8881 42 1 4.3130 -13.3213 -0.8919 43 1 2.8588 -14.8132 -2.1354 44 1 1.6269 -16.9442 -2.1402 45 1 1.4375 -19.0393 -0.0038 46 1 1.6178 -16.9403 2.1334 47 1 2.8586 -14.8144 2.1299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258149775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:07 Heat of formation + Delta-G solvation = -117.815900 kcal Electronic energy + Delta-G solvation = -25969.046615 eV Core-core repulsion = 21922.909911 eV Total energy + Delta-G solvation = -4046.136704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.63784 -40.28365 -38.61183 -37.72013 -36.20537 -35.51788 -33.63334 -33.23068 -31.51194 -31.25125 -30.08918 -27.39928 -26.33124 -24.35566 -23.33840 -22.87954 -22.12861 -21.56135 -20.77673 -20.04626 -18.92821 -18.34939 -17.02264 -16.64518 -16.42413 -16.32864 -16.12994 -15.84549 -15.40146 -15.38780 -14.99664 -14.56400 -14.45434 -14.30821 -13.96918 -13.73326 -13.58497 -13.54316 -12.92858 -12.65941 -12.32391 -12.31500 -12.11057 -11.89491 -11.80184 -11.68644 -11.58901 -11.34261 -10.95445 -10.91609 -10.76555 -10.60779 -9.90704 -9.80367 -9.51858 -9.50151 -9.38738 -9.13814 -8.98750 -8.97761 -8.38293 -6.03027 -4.06054 0.68221 0.83397 1.40885 2.32523 3.07974 3.21769 3.30956 3.37395 3.40462 3.64244 3.71023 4.11938 4.26002 4.43272 4.46698 4.49187 4.52138 4.68694 4.74489 4.85707 4.88700 5.11129 5.15946 5.27270 5.33098 5.38400 5.46675 5.58129 5.58843 5.67088 5.68623 5.77834 5.91498 5.96122 6.07521 6.09128 6.26351 6.29827 6.53555 6.68396 6.89755 6.94740 7.12829 7.39073 7.61353 7.70771 7.72956 7.95279 8.04251 8.36605 9.00467 9.58399 11.08273 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.040593 B = 0.001243 C = 0.001224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.604116 B =22520.151980 C =22877.754575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.113 3.887 12 N -0.691 5.691 13 C 0.500 3.500 14 O -0.527 6.527 15 C 0.508 3.492 16 O -0.521 6.521 17 N -0.705 5.705 18 C 0.117 3.883 19 C -0.128 4.128 20 C -0.077 4.077 21 C -0.090 4.090 22 C -0.099 4.099 23 C -0.143 4.143 24 C 0.098 3.902 25 O -0.501 6.501 26 C -0.143 4.143 27 C -0.099 4.099 28 H 0.261 0.739 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.411 0.589 36 H 0.414 0.586 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.390 0.610 46 H 0.128 0.872 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.272 -37.166 -0.002 37.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.343 5.343 13 C 0.279 3.721 14 O -0.404 6.404 15 C 0.289 3.711 16 O -0.396 6.396 17 N -0.359 5.359 18 C -0.006 4.006 19 C -0.166 4.166 20 C -0.114 4.114 21 C -0.090 4.090 22 C -0.118 4.118 23 C -0.162 4.162 24 C 0.054 3.946 25 O -0.311 6.311 26 C -0.162 4.162 27 C -0.118 4.118 28 H 0.071 0.929 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.247 0.753 36 H 0.250 0.750 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.246 0.754 46 H 0.146 0.854 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.628 -36.658 0.004 37.252 hybrid contribution 0.723 0.540 -0.012 0.903 sum 7.351 -36.118 -0.008 36.859 Atomic orbital electron populations 1.69958 1.06074 1.26718 1.50546 1.25016 0.94846 0.99302 0.95207 0.86578 0.79830 0.83382 0.78118 1.20647 1.21199 1.19857 1.21203 0.93059 0.90893 1.51005 0.92569 1.19032 0.93800 0.90785 0.97720 1.21928 0.99882 0.92953 1.01318 1.21851 0.91744 0.84722 1.02550 1.46072 1.12230 1.05001 1.70978 1.20009 0.88458 0.84537 0.79069 1.90760 1.16014 1.84709 1.48881 1.20348 0.88773 0.84427 0.77551 1.90761 1.16252 1.84806 1.47779 1.45754 1.11697 1.04868 1.73583 1.21485 0.91834 0.84243 1.03078 1.21808 0.98601 0.92406 1.03780 1.20493 0.96900 0.90239 1.03813 1.19882 0.99399 0.96608 0.93092 1.20982 0.97895 0.94913 0.97960 1.21447 0.99560 0.97239 0.97920 1.18521 0.95092 0.88541 0.92427 1.84839 1.35469 1.14252 1.96520 1.21444 0.99515 0.97281 0.97911 1.20983 0.97853 0.94953 0.97964 0.92916 0.96203 0.96182 0.92416 0.92425 0.91073 0.91078 0.75307 0.75013 0.90802 0.90808 0.90666 0.90674 0.90293 0.90292 0.85438 0.85394 0.75438 0.85394 0.85435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 11 C 0.11 1.94 5.67 -4.04 -0.02 1.92 16 12 N -0.69 -10.31 5.55 -60.73 -0.34 -10.65 16 13 C 0.50 7.39 7.89 -11.58 -0.09 7.30 16 14 O -0.53 -8.87 16.48 5.50 0.09 -8.78 16 15 C 0.51 6.51 7.89 -11.58 -0.09 6.42 16 16 O -0.52 -7.64 16.48 5.50 0.09 -7.55 16 17 N -0.71 -6.69 5.55 -60.73 -0.34 -7.03 16 18 C 0.12 0.82 5.67 -4.04 -0.02 0.79 16 19 C -0.13 -0.63 5.31 -26.73 -0.14 -0.77 16 20 C -0.08 -0.32 5.34 -27.89 -0.15 -0.47 16 21 C -0.09 -0.50 5.13 -104.60 -0.54 -1.03 16 22 C -0.10 -0.56 9.69 -39.61 -0.38 -0.95 16 23 C -0.14 -0.89 9.99 -39.43 -0.39 -1.28 16 24 C 0.10 0.66 6.71 -39.21 -0.26 0.40 16 25 O -0.50 -3.05 13.50 -19.41 -0.26 -3.31 16 26 C -0.14 -0.89 9.99 -39.43 -0.39 -1.28 16 27 C -0.10 -0.56 9.69 -39.61 -0.38 -0.95 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 35 H 0.41 5.59 7.94 -40.82 -0.32 5.27 16 36 H 0.41 3.54 7.94 -40.82 -0.32 3.21 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 41 H 0.08 0.29 8.08 -51.93 -0.42 -0.13 16 42 H 0.08 0.29 8.09 -51.93 -0.42 -0.13 16 43 H 0.13 0.53 8.06 -52.48 -0.42 0.10 16 44 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 45 H 0.39 0.47 9.06 45.56 0.41 0.89 16 46 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 47 H 0.13 0.53 8.06 -52.48 -0.42 0.10 16 LS Contribution 406.31 15.07 6.12 6.12 Total: -1.00 -34.47 406.31 -9.02 -43.49 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -6.54 Total: 2.47 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -3.57 Total: -5.29 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.06 Total: -43.59 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.08 Total: -19.64 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.47 -9.02 -43.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258149775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.325 kcal (2) G-P(sol) polarization free energy of solvation -34.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds