Wall clock time and date at job start Tue Mar 31 2020 22:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86798 * 120.00337 * 2 1 4 4 H 1.48496 * 109.47436 * 269.99766 * 3 2 1 5 5 H 1.48505 * 109.47227 * 29.99684 * 3 2 1 6 6 H 1.48495 * 109.47530 * 149.99702 * 3 2 1 7 7 C 1.37884 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99872 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47319 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47157 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47140 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99836 * 180.02562 * 12 11 10 14 14 O 1.21343 * 120.00294 * 359.97438 * 13 12 11 15 15 C 1.49453 * 119.99565 * 179.97438 * 13 12 11 16 16 O 1.21347 * 120.00570 * 359.97438 * 15 13 12 17 17 N 1.34778 * 119.99565 * 179.97438 * 15 13 12 18 18 C 1.46500 * 119.99833 * 179.97438 * 17 15 13 19 19 C 1.53002 * 109.47476 * 180.02562 * 18 17 15 20 20 C 1.52998 * 109.47501 * 180.02562 * 19 18 17 21 21 C 1.50698 * 109.47322 * 179.97438 * 20 19 18 22 22 C 1.38269 * 119.94432 * 89.99694 * 21 20 19 23 23 C 1.38137 * 120.06013 * 180.02562 * 22 21 20 24 24 C 1.38737 * 119.94162 * 359.97438 * 23 22 21 25 25 O 1.35896 * 120.05545 * 180.02562 * 24 23 22 26 26 C 1.38734 * 119.88732 * 0.27760 * 24 23 22 27 27 C 1.38143 * 119.94306 * 359.42517 * 26 24 23 28 28 H 0.97004 * 120.00075 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46858 * 59.99722 * 9 7 2 30 30 H 1.08999 * 109.47119 * 300.00440 * 9 7 2 31 31 H 1.08997 * 109.46774 * 60.00063 * 10 9 7 32 32 H 1.08997 * 109.46991 * 300.00387 * 10 9 7 33 33 H 1.08997 * 109.47384 * 60.00244 * 11 10 9 34 34 H 1.09008 * 109.46893 * 300.00153 * 11 10 9 35 35 H 0.96996 * 119.99928 * 359.97438 * 12 11 10 36 36 H 0.96996 * 120.00235 * 359.97438 * 17 15 13 37 37 H 1.09000 * 109.47259 * 59.99989 * 18 17 15 38 38 H 1.08999 * 109.47530 * 300.00211 * 18 17 15 39 39 H 1.09000 * 109.46925 * 59.99736 * 19 18 17 40 40 H 1.09008 * 109.46725 * 300.00290 * 19 18 17 41 41 H 1.08997 * 109.47096 * 59.99673 * 20 19 18 42 42 H 1.09005 * 109.46515 * 299.99725 * 20 19 18 43 43 H 1.08008 * 119.96973 * 0.02562 * 22 21 20 44 44 H 1.07997 * 120.03660 * 179.97438 * 23 22 21 45 45 H 0.96700 * 114.00170 * 90.00174 * 25 24 23 46 46 H 1.07999 * 120.02623 * 179.72382 * 26 24 23 47 47 H 1.08005 * 119.97511 * 180.27480 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 -0.0001 12 7 2.4321 -6.1006 0.0005 13 6 1.9828 -7.3713 -0.0004 14 8 0.7898 -7.5930 -0.0013 15 6 2.9540 -8.5073 -0.0004 16 8 4.1470 -8.2856 0.0000 17 7 2.5046 -9.7779 -0.0008 18 6 3.4566 -10.8915 -0.0013 19 6 2.6916 -12.2165 -0.0023 20 6 3.6858 -13.3795 -0.0022 21 6 2.9323 -14.6846 -0.0026 22 6 2.5875 -15.2821 -1.2009 23 6 1.8964 -16.4781 -1.2041 24 6 1.5487 -17.0801 -0.0035 25 8 0.8692 -18.2570 -0.0038 26 6 1.8912 -16.4759 1.1975 27 6 2.5878 -15.2830 1.1952 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5570 -0.8897 30 1 0.6239 -2.5567 0.8902 31 1 2.8718 -3.6043 0.8905 32 1 2.8718 -3.6043 -0.8894 33 1 0.8538 -5.0446 -0.8903 34 1 0.8531 -5.0450 0.8897 35 1 3.3857 -5.9234 0.0008 36 1 1.5510 -9.9551 -0.0007 37 1 4.0834 -10.8341 0.8886 38 1 4.0832 -10.8335 -0.8913 39 1 2.0652 -12.2737 -0.8925 40 1 2.0647 -12.2748 0.8875 41 1 4.3120 -13.3221 0.8881 42 1 4.3130 -13.3213 -0.8919 43 1 2.8588 -14.8132 -2.1354 44 1 1.6269 -16.9442 -2.1402 45 1 1.4375 -19.0393 -0.0038 46 1 1.6178 -16.9403 2.1334 47 1 2.8586 -14.8144 2.1299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258149775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:06 Heat of formation + Delta-G solvation = -142.761606 kcal Electronic energy + Delta-G solvation = -25970.128342 eV Core-core repulsion = 21922.909911 eV Total energy + Delta-G solvation = -4047.218431 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.71252 -40.70178 -39.71018 -38.17498 -37.26039 -36.63966 -35.23690 -34.10320 -33.03478 -31.91134 -30.64485 -28.99079 -27.20247 -25.64882 -24.08465 -23.74148 -22.93062 -22.36329 -22.02921 -21.16084 -19.47136 -19.33818 -18.50906 -17.95349 -17.34824 -17.01144 -16.90384 -16.60030 -16.38634 -16.33561 -16.24680 -15.86160 -15.64306 -14.98990 -14.76617 -14.64359 -14.33336 -14.26563 -13.98143 -13.77360 -13.56631 -13.42707 -13.10950 -12.90489 -12.78061 -12.75321 -12.55202 -12.45231 -12.39809 -12.02360 -11.72519 -11.69508 -11.55321 -11.34769 -11.23175 -10.71517 -10.54275 -10.35138 -10.25679 -9.92600 -9.39695 -8.18973 -6.29902 0.26962 0.31064 0.41740 1.30498 1.42892 1.43513 1.54674 2.11006 2.42241 2.60297 2.72905 3.15213 3.33962 3.42178 3.68855 3.89542 4.08177 4.08819 4.10619 4.18610 4.26298 4.31454 4.47825 4.48439 4.52995 4.68520 4.74324 4.84376 4.87351 4.92014 5.02382 5.06488 5.13265 5.15524 5.18560 5.23417 5.32965 5.38529 5.49698 5.52169 5.69873 5.71281 5.84953 5.89411 5.94789 6.23483 6.33145 6.70703 6.85406 6.87113 6.91419 7.39649 8.92967 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.040593 B = 0.001243 C = 0.001224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.604116 B =22520.151980 C =22877.754575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.025 3.975 10 C -0.106 4.106 11 C 0.127 3.873 12 N -0.687 5.687 13 C 0.500 3.500 14 O -0.549 6.549 15 C 0.514 3.486 16 O -0.541 6.541 17 N -0.690 5.690 18 C 0.115 3.885 19 C -0.118 4.118 20 C -0.072 4.072 21 C -0.095 4.095 22 C -0.105 4.105 23 C -0.157 4.157 24 C 0.085 3.915 25 O -0.516 6.516 26 C -0.156 4.156 27 C -0.105 4.105 28 H 0.263 0.737 29 H -0.004 1.004 30 H -0.004 1.004 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.419 0.581 36 H 0.419 0.581 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.142 0.858 44 H 0.135 0.865 45 H 0.408 0.592 46 H 0.135 0.865 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.967 -37.799 -0.005 38.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.013 4.013 10 C -0.144 4.144 11 C 0.004 3.996 12 N -0.339 5.339 13 C 0.281 3.719 14 O -0.428 6.428 15 C 0.294 3.706 16 O -0.418 6.418 17 N -0.342 5.342 18 C -0.007 4.007 19 C -0.156 4.156 20 C -0.110 4.110 21 C -0.095 4.095 22 C -0.123 4.123 23 C -0.175 4.175 24 C 0.041 3.959 25 O -0.329 6.329 26 C -0.175 4.175 27 C -0.123 4.123 28 H 0.072 0.928 29 H 0.014 0.986 30 H 0.015 0.985 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.257 0.743 36 H 0.256 0.744 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.160 0.840 44 H 0.153 0.847 45 H 0.267 0.733 46 H 0.153 0.847 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.344 -37.349 0.000 38.270 hybrid contribution 0.154 0.628 -0.012 0.646 sum 8.498 -36.722 -0.012 37.692 Atomic orbital electron populations 1.70093 1.07835 1.27775 1.51646 1.25959 0.95709 1.03345 0.94742 0.85456 0.78707 0.78502 0.78441 1.19861 1.20955 1.18616 1.21686 0.93723 0.92144 1.50564 0.91765 1.18935 0.94356 0.92603 0.95419 1.21640 0.98627 0.91884 1.02239 1.21478 0.91612 0.84568 1.01976 1.45885 1.12254 1.04696 1.71045 1.20399 0.88561 0.84875 0.78104 1.90750 1.17129 1.85070 1.49810 1.19897 0.87877 0.84770 0.78078 1.90760 1.16600 1.85053 1.49390 1.45807 1.12573 1.04335 1.71535 1.21678 0.91615 0.84035 1.03355 1.21725 0.98523 0.91430 1.03929 1.20476 0.96647 0.89075 1.04768 1.20044 0.99395 0.97079 0.92980 1.21220 0.97573 0.94774 0.98762 1.21628 1.00003 0.97717 0.98151 1.18719 0.95355 0.88953 0.92893 1.84780 1.36561 1.14993 1.96546 1.21626 0.99965 0.97759 0.98142 1.21220 0.97529 0.94810 0.98765 0.92799 0.98552 0.98530 0.91441 0.91433 0.91744 0.91752 0.74323 0.74359 0.90502 0.90509 0.90549 0.90556 0.89392 0.89390 0.84042 0.84730 0.73314 0.84735 0.84039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.45 13.29 21.45 0.28 -56.16 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.96 43.72 29.54 68.60 2.03 45.75 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.54 -30.21 9.11 25.60 0.23 -29.97 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.11 -4.05 5.27 30.59 0.16 -3.89 16 11 C 0.13 4.30 5.67 86.38 0.49 4.79 16 12 N -0.69 -19.79 5.55 -464.41 -2.58 -22.37 16 13 C 0.50 14.29 7.89 87.27 0.69 14.98 16 14 O -0.55 -18.14 16.48 -3.22 -0.05 -18.19 16 15 C 0.51 12.40 7.89 87.27 0.69 13.09 16 16 O -0.54 -14.99 16.48 -3.24 -0.05 -15.04 16 17 N -0.69 -11.85 5.55 -464.41 -2.58 -14.43 16 18 C 0.12 1.36 5.67 86.38 0.49 1.85 16 19 C -0.12 -0.90 5.31 30.59 0.16 -0.74 16 20 C -0.07 -0.44 5.34 29.85 0.16 -0.28 16 21 C -0.09 -0.89 5.13 -19.85 -0.10 -1.00 16 22 C -0.11 -1.06 9.69 22.25 0.22 -0.84 16 23 C -0.16 -1.85 9.99 22.37 0.22 -1.62 16 24 C 0.08 1.11 6.71 22.51 0.15 1.26 16 25 O -0.52 -6.12 13.50 -92.38 -1.25 -7.37 16 26 C -0.16 -1.85 9.99 22.37 0.22 -1.62 16 27 C -0.11 -1.06 9.69 22.25 0.22 -0.84 16 28 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 30 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 31 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 35 H 0.42 10.80 7.94 -92.71 -0.74 10.07 16 36 H 0.42 6.45 7.94 -92.71 -0.74 5.71 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 41 H 0.09 0.41 8.08 -2.39 -0.02 0.39 16 42 H 0.09 0.41 8.09 -2.38 -0.02 0.39 16 43 H 0.14 0.92 8.06 -2.91 -0.02 0.90 16 44 H 0.13 1.28 8.06 -2.91 -0.02 1.25 16 45 H 0.41 0.84 9.06 -74.06 -0.67 0.17 16 46 H 0.13 1.28 8.06 -2.91 -0.02 1.25 16 47 H 0.14 0.92 8.06 -2.91 -0.02 0.90 16 Total: -1.00 -73.38 406.31 -0.73 -74.11 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -1.14 Total: 16.66 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 4.61 Total: -2.96 kcal Atomic # 7 Polarization: -88.09 SS G_CDS: -4.87 Total: -92.96 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -1.35 Total: -40.60 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -73.38 -0.73 -74.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258149775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.650 kcal (2) G-P(sol) polarization free energy of solvation -73.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds