Wall clock time and date at job start Tue Mar 31 2020 17:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46901 * 109.47145 * 276.87552 * 3 2 1 5 5 C 1.46902 * 110.99992 * 66.04727 * 4 3 2 6 6 C 1.47200 * 109.46944 * 293.95488 * 5 4 3 7 7 C 2.90648 * 69.53759 * 308.10613 * 2 1 3 8 8 C 3.80954 * 49.41858 * 308.10636 * 2 1 3 9 9 C 1.38398 * 110.99989 * 189.99563 * 4 3 2 10 10 N 1.31372 * 126.37672 * 236.06747 * 9 4 3 11 11 N 1.28512 * 110.08190 * 179.97438 * 10 9 4 12 12 C 1.31249 * 109.93215 * 0.02562 * 11 10 9 13 13 C 1.47881 * 126.46919 * 180.02562 * 12 11 10 14 14 C 1.39958 * 120.02056 * 161.81458 * 13 12 11 15 15 C 1.38327 * 120.35161 * 180.02562 * 14 13 12 16 16 C 1.37759 * 120.40777 * 359.95647 * 15 14 13 17 17 C 1.40789 * 120.02986 * 0.02562 * 16 15 14 18 18 C 1.41430 * 120.16938 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00214 * 27.44827 * 18 17 16 20 20 C 1.39923 * 119.99740 * 207.44393 * 18 17 16 21 21 N 1.30830 * 120.00031 * 11.26124 * 20 18 17 22 22 Si 1.86803 * 120.00110 * 191.24994 * 20 18 17 23 23 H 1.48506 * 109.46782 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46913 * 120.00171 * 22 20 18 25 25 H 1.48496 * 109.47517 * 240.00633 * 22 20 18 26 26 C 1.38959 * 120.02322 * 341.53225 * 13 12 11 27 27 N 1.36470 * 126.36924 * 56.05191 * 9 4 3 28 28 C 1.46505 * 127.16258 * 359.97438 * 27 9 4 29 29 H 4.40883 * 5.52133 * 179.97438 * 4 1 2 30 30 H 1.09000 * 109.47091 * 156.87324 * 3 2 1 31 31 H 1.09004 * 109.47013 * 36.87420 * 3 2 1 32 32 H 1.08998 * 109.46993 * 53.95364 * 5 4 3 33 33 H 1.08997 * 109.47418 * 173.95312 * 5 4 3 34 34 H 1.08996 * 109.47400 * 41.70713 * 8 7 6 35 35 H 1.09002 * 109.46953 * 161.71293 * 8 7 6 36 36 H 1.08997 * 109.46967 * 281.70470 * 8 7 6 37 37 H 1.07995 * 119.82616 * 359.97438 * 14 13 12 38 38 H 1.08005 * 119.79945 * 179.97438 * 15 14 13 39 39 H 1.07998 * 119.98369 * 180.02562 * 16 15 14 40 40 H 0.97002 * 120.00204 * 179.97438 * 21 20 18 41 41 H 1.08002 * 120.19707 * 359.97438 * 26 13 12 42 42 H 1.08990 * 109.47166 * 264.43177 * 28 27 9 43 43 H 1.09002 * 109.46928 * 24.43929 * 28 27 9 44 44 H 1.08995 * 109.46766 * 144.43158 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1358 -0.1649 1.3750 5 6 2.7869 -1.4910 1.9020 6 6 1.3248 -1.5967 2.0359 7 6 0.1579 -1.6805 2.1427 8 6 -1.3042 -1.7855 2.2766 9 6 4.5007 0.0531 1.4450 10 7 5.4004 -0.7830 1.9111 11 7 6.5722 -0.2620 1.8275 12 6 6.4917 0.9387 1.3035 13 6 7.6177 1.8610 1.0420 14 6 7.4561 2.9286 0.1516 15 6 8.5049 3.7951 -0.0985 16 6 9.7198 3.6180 0.5264 17 6 9.9006 2.5498 1.4255 18 6 11.1464 2.3655 2.0691 19 1 11.7932 3.2121 2.2462 20 6 11.5410 1.0864 2.4764 21 7 10.8727 0.0363 2.0734 22 14 13.0222 0.8778 3.5954 23 1 13.5993 2.2104 3.9060 24 1 12.6008 0.2154 4.8559 25 1 14.0434 0.0422 2.9144 26 6 8.8351 1.6717 1.6847 27 7 5.1624 1.1767 1.0424 28 6 4.5784 2.3846 0.4539 29 1 -1.0499 0.0002 0.0001 30 1 3.0089 0.9459 -0.4036 31 1 3.0097 -0.8213 -0.6167 32 1 3.1456 -2.2598 1.2177 33 1 3.2520 -1.6280 2.8782 34 1 -1.7821 -1.0507 1.6288 35 1 -1.6244 -2.7868 1.9885 36 1 -1.5887 -1.5969 3.3118 37 1 6.5078 3.0762 -0.3436 38 1 8.3705 4.6157 -0.7876 39 1 10.5339 4.2988 0.3264 40 1 11.1464 -0.8505 2.3555 41 1 8.9626 0.8520 2.3764 42 1 4.6367 2.3240 -0.6328 43 1 3.5350 2.4689 0.7578 44 1 5.1291 3.2596 0.7991 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262876109.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:33 Heat of formation + Delta-G solvation = 217.131310 kcal Electronic energy + Delta-G solvation = -27148.852064 eV Core-core repulsion = 23456.841431 eV Total energy + Delta-G solvation = -3692.010632 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.149 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -44.01448 -39.71064 -39.21066 -36.29218 -35.51156 -35.05644 -33.92448 -32.77392 -31.47223 -30.55615 -29.76294 -28.79594 -27.76253 -27.18089 -25.92269 -24.16246 -22.89182 -21.84160 -21.48078 -19.40185 -19.26232 -18.59302 -17.72885 -17.53052 -17.06664 -17.04963 -16.58758 -16.30163 -16.14486 -15.69426 -15.11945 -14.83507 -14.57909 -14.49925 -14.31332 -14.28362 -14.21768 -14.12106 -13.72124 -13.56985 -13.45839 -12.89731 -12.77254 -12.65191 -12.59840 -12.14537 -12.02594 -11.85013 -11.61236 -11.47646 -11.28533 -11.23584 -11.12992 -11.03812 -10.67862 -10.23887 -9.91396 -9.32689 -8.90226 -8.54276 -6.36233 0.14963 0.81237 0.99749 1.13426 1.39145 1.48445 1.54297 1.60758 1.70451 1.88979 1.93414 2.08754 2.22295 2.68996 2.79433 3.28153 3.32577 3.45489 3.63032 3.69670 3.85542 3.91877 4.09809 4.20639 4.27920 4.30415 4.45041 4.46749 4.58840 4.65832 4.73132 4.82923 4.84914 4.87795 4.93175 4.99909 5.11468 5.14908 5.23810 5.32260 5.37861 5.41542 5.59754 5.88877 6.00655 6.05790 6.12708 6.34397 6.64215 6.67075 6.71044 6.93732 6.98587 7.67155 8.37988 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.019826 B = 0.002626 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.921417 B =10659.299897 C =11855.699675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.222 4.222 3 C 0.159 3.841 4 N -0.438 5.438 5 C 0.191 3.809 6 C -0.227 4.227 7 C -0.146 4.146 8 C -0.045 4.045 9 C 0.352 3.648 10 N -0.351 5.351 11 N -0.315 5.315 12 C 0.243 3.757 13 C -0.028 4.028 14 C -0.217 4.217 15 C -0.089 4.089 16 C -0.220 4.220 17 C 0.072 3.928 18 C -0.494 4.494 19 H 0.082 0.918 20 C 0.027 3.973 21 N -0.826 5.826 22 Si 0.981 3.019 23 H -0.252 1.252 24 H -0.272 1.272 25 H -0.267 1.267 26 C -0.136 4.136 27 N -0.474 5.474 28 C 0.058 3.942 29 H 0.252 0.748 30 H 0.117 0.883 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.108 0.892 40 H 0.284 0.716 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.112 0.888 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.129 1.451 -4.866 23.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.223 4.223 3 C 0.034 3.966 4 N -0.161 5.161 5 C 0.066 3.934 6 C -0.228 4.228 7 C -0.148 4.148 8 C -0.100 4.100 9 C -0.004 4.004 10 N -0.197 5.197 11 N -0.154 5.154 12 C -0.022 4.022 13 C -0.031 4.031 14 C -0.237 4.237 15 C -0.107 4.107 16 C -0.240 4.240 17 C 0.070 3.930 18 C -0.524 4.524 19 H 0.100 0.900 20 C -0.187 4.187 21 N -0.452 5.452 22 Si 0.802 3.198 23 H -0.175 1.175 24 H -0.197 1.197 25 H -0.191 1.191 26 C -0.158 4.158 27 N -0.168 5.168 28 C -0.082 4.082 29 H 0.269 0.731 30 H 0.135 0.865 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.155 0.845 38 H 0.157 0.843 39 H 0.126 0.874 40 H 0.095 0.905 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.130 0.870 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -22.808 0.286 -3.972 23.153 hybrid contribution 0.876 0.041 -0.235 0.907 sum -21.933 0.328 -4.206 22.335 Atomic orbital electron populations 1.25545 0.96355 0.98628 0.96328 1.22268 0.93731 1.02702 1.03562 1.19246 0.87281 1.04205 0.85886 1.58604 1.03140 1.32039 1.22300 1.18631 0.86843 0.86171 1.01742 1.21658 0.93208 1.04358 1.03560 1.23171 0.94607 0.97561 0.99442 1.19236 0.81889 1.04576 1.04300 1.22396 0.90669 0.85939 1.01445 1.74483 0.95112 1.25049 1.25039 1.74389 1.15100 1.07061 1.18809 1.23118 0.83543 0.94803 1.00767 1.17540 0.89517 0.94758 1.01290 1.20991 1.00795 0.97543 1.04415 1.20862 0.92286 0.98705 0.98865 1.21424 0.98487 1.02459 1.01673 1.17919 0.92772 0.91577 0.90727 1.19857 1.02821 0.94560 1.35139 0.89977 1.26797 1.01033 0.94999 0.95870 1.69886 1.38738 1.00028 1.36526 0.85162 0.77210 0.79539 0.77841 1.17536 1.19701 1.19148 1.21416 0.91016 1.01620 1.01734 1.46164 1.05965 1.15530 1.49134 1.22752 1.01000 0.84086 1.00409 0.73145 0.86548 0.91072 0.90853 0.88449 0.87719 0.88552 0.89048 0.84466 0.84276 0.87398 0.90504 0.87676 0.87444 0.87003 0.87557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 15.87 74.32 1.18 -1.02 16 2 C -0.22 -4.39 10.94 31.13 0.34 -4.05 16 3 C 0.16 3.49 5.18 84.50 0.44 3.93 16 4 N -0.44 -12.19 4.57 -727.16 -3.32 -15.52 16 5 C 0.19 5.28 4.93 84.50 0.42 5.69 16 6 C -0.23 -5.53 10.95 31.12 0.34 -5.19 16 7 C -0.15 -2.79 11.48 31.12 0.36 -2.43 16 8 C -0.04 -0.38 10.21 70.18 0.72 0.34 16 9 C 0.35 12.34 7.20 260.13 1.87 14.21 16 10 N -0.35 -15.24 11.13 -58.03 -0.65 -15.89 16 11 N -0.31 -15.65 11.99 -50.79 -0.61 -16.26 16 12 C 0.24 10.82 7.70 136.23 1.05 11.87 16 13 C -0.03 -1.31 5.86 -20.13 -0.12 -1.43 16 14 C -0.22 -8.33 8.75 22.71 0.20 -8.14 16 15 C -0.09 -3.43 10.01 22.18 0.22 -3.21 16 16 C -0.22 -10.10 9.79 22.78 0.22 -9.88 16 17 C 0.07 3.89 5.56 -21.32 -0.12 3.77 16 18 C -0.49 -26.79 9.06 23.46 0.21 -26.58 16 19 H 0.08 4.21 7.87 -2.91 -0.02 4.19 16 20 C 0.03 1.43 5.25 85.25 0.45 1.88 16 21 N -0.83 -46.32 10.80 21.82 0.24 -46.09 16 22 Si 0.98 40.14 29.57 68.60 2.03 42.17 16 23 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 25 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 26 C -0.14 -7.44 8.31 22.99 0.19 -7.25 16 27 N -0.47 -16.07 3.23 -540.10 -1.74 -17.81 16 28 C 0.06 1.26 7.64 127.77 0.98 2.23 16 29 H 0.25 1.41 6.87 -4.42 -0.03 1.37 16 30 H 0.12 2.14 5.18 -2.39 -0.01 2.13 16 31 H 0.07 1.58 8.06 -2.38 -0.02 1.56 16 32 H 0.07 2.00 8.06 -2.39 -0.02 1.98 16 33 H 0.10 2.97 7.75 -2.39 -0.02 2.95 16 34 H 0.10 0.39 6.65 -2.39 -0.02 0.38 16 35 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.14 4.01 4.90 -2.91 -0.01 4.00 16 38 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 39 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 40 H 0.28 14.82 8.30 -92.71 -0.77 14.05 16 41 H 0.11 6.40 6.05 -2.91 -0.02 6.38 16 42 H 0.11 1.76 7.57 -2.39 -0.02 1.74 16 43 H 0.11 1.93 7.33 -2.39 -0.02 1.92 16 44 H 0.11 2.31 6.48 -2.39 -0.02 2.29 16 Total: -1.00 -75.01 370.76 5.93 -69.08 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 1.04 Total: 25.56 kcal Atomic # 6 Polarization: -34.20 SS G_CDS: 8.94 Total: -25.26 kcal Atomic # 7 Polarization: -105.47 SS G_CDS: -6.09 Total: -111.56 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -75.01 5.93 -69.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262876109.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 286.215 kcal (2) G-P(sol) polarization free energy of solvation -75.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 211.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 217.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds