Wall clock time and date at job start Tue Mar 31 2020 22:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00074 * 2 1 4 4 H 1.48497 * 109.47306 * 240.00325 * 3 2 1 5 5 H 1.48498 * 109.47382 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47182 * 120.00236 * 3 2 1 7 7 C 1.38812 * 119.99438 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99389 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00422 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99983 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47092 * 324.99883 * 10 9 7 12 12 C 1.53000 * 109.47023 * 204.99625 * 10 9 7 13 13 N 1.46507 * 109.46803 * 55.00453 * 12 10 9 14 14 C 1.34773 * 119.99647 * 179.97438 * 13 12 10 15 15 O 1.21284 * 120.00340 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99967 * 179.97438 * 14 13 12 17 17 C 1.52998 * 110.43123 * 59.30143 * 16 14 13 18 18 F 1.39897 * 109.47598 * 60.70038 * 17 16 14 19 19 F 1.39895 * 109.47159 * 180.70265 * 17 16 14 20 20 F 1.39908 * 109.46979 * 300.70090 * 17 16 14 21 21 C 1.54886 * 110.48659 * 296.75868 * 16 14 13 22 22 C 1.55229 * 102.58917 * 279.18522 * 21 16 14 23 23 C 1.54270 * 104.23218 * 322.08461 * 22 21 16 24 24 C 1.53872 * 106.59707 * 23.61001 * 23 22 21 25 25 C 1.52997 * 109.47007 * 84.99832 * 10 9 7 26 26 C 1.52999 * 117.50101 * 8.75019 * 25 10 9 27 27 C 1.52996 * 117.50050 * 300.08878 * 25 10 9 28 28 H 0.97001 * 120.00131 * 359.97438 * 1 2 3 29 29 H 0.96997 * 119.99743 * 0.02562 * 9 7 2 30 30 H 1.09008 * 109.47142 * 174.99638 * 12 10 9 31 31 H 1.08990 * 109.47170 * 295.00136 * 12 10 9 32 32 H 0.96994 * 119.99737 * 359.97438 * 13 12 10 33 33 H 1.09005 * 110.75362 * 37.57748 * 21 16 14 34 34 H 1.09000 * 110.75490 * 160.94095 * 21 16 14 35 35 H 1.09006 * 110.46915 * 203.39206 * 22 21 16 36 36 H 1.08999 * 110.58210 * 80.83318 * 22 21 16 37 37 H 1.08995 * 110.03197 * 264.32587 * 23 22 21 38 38 H 1.08997 * 110.02915 * 142.89294 * 23 22 21 39 39 H 1.09000 * 110.03318 * 240.71446 * 24 23 22 40 40 H 1.09001 * 110.07251 * 119.30810 * 24 23 22 41 41 H 1.09002 * 115.54867 * 154.41632 * 25 10 9 42 42 H 1.08998 * 117.49862 * 359.97438 * 26 25 10 43 43 H 1.09000 * 117.50295 * 145.02180 * 26 25 10 44 44 H 1.09005 * 117.49713 * 214.98330 * 27 25 10 45 45 H 1.08996 * 117.49883 * 359.97027 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9682 -3.5503 -0.5918 12 6 1.1802 -4.7519 -0.6110 13 7 0.7326 -4.3346 -1.9422 14 6 -0.0570 -5.1465 -2.6728 15 8 -0.3974 -6.2223 -2.2281 16 6 -0.5179 -4.7171 -4.0418 17 6 0.6835 -4.4569 -4.9527 18 9 1.4307 -5.6321 -5.0863 19 9 0.2337 -4.0447 -6.2116 20 9 1.4849 -3.4560 -4.3930 21 6 -1.4069 -3.4526 -3.9427 22 6 -2.7871 -4.0398 -3.5431 23 6 -2.8855 -5.3553 -4.3430 24 6 -1.4427 -5.7859 -4.6601 25 6 2.4230 -4.0362 1.4349 26 6 1.8152 -3.1998 2.5626 27 6 3.3010 -3.0612 2.2217 28 1 -0.4850 0.8400 0.0004 29 1 0.3555 -2.3880 -0.0005 30 1 1.7551 -5.6743 -0.6937 31 1 0.3132 -4.9200 0.0277 32 1 1.0046 -3.4741 -2.2976 33 1 -1.0338 -2.7776 -3.1723 34 1 -1.4665 -2.9458 -4.9059 35 1 -3.5885 -3.3585 -3.8292 36 1 -2.8226 -4.2408 -2.4724 37 1 -3.4375 -5.1894 -5.2681 38 1 -3.3804 -6.1201 -3.7444 39 1 -1.2945 -5.8289 -5.7391 40 1 -1.2368 -6.7598 -4.2161 41 1 2.5643 -5.1014 1.6183 42 1 1.1557 -2.3789 2.2812 43 1 1.5572 -3.7144 3.4882 44 1 4.0199 -3.4849 2.9230 45 1 3.6191 -2.1497 1.7158 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265382977.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:08 Heat of formation + Delta-G solvation = -161.927775 kcal Electronic energy + Delta-G solvation = -31392.530892 eV Core-core repulsion = 26802.624613 eV Total energy + Delta-G solvation = -4589.906279 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.20398 -47.68562 -47.64067 -40.27839 -37.93076 -36.98449 -34.61590 -33.30913 -31.31892 -30.41600 -28.95423 -28.02449 -24.86835 -24.02952 -23.14339 -21.82906 -21.40090 -20.66190 -19.98935 -19.15492 -18.53765 -18.22310 -18.03404 -17.23224 -16.41863 -15.90404 -15.41628 -14.95812 -14.81943 -14.61600 -14.48167 -14.42440 -14.19997 -14.04742 -13.79834 -13.75511 -13.59738 -13.52954 -13.34680 -12.99083 -12.87389 -12.12062 -11.76849 -11.54755 -11.40666 -11.31850 -11.22464 -11.20863 -11.14656 -10.89768 -10.86961 -10.56930 -10.53216 -10.17235 -9.84521 -9.68874 -9.48184 -9.19729 -9.00828 -8.76685 -7.10537 -5.86761 -3.16765 2.27643 2.88991 3.16839 3.38073 3.43318 3.44346 3.66585 3.75936 4.05087 4.43797 4.47268 4.50032 4.60710 4.77398 5.01630 5.17323 5.21105 5.29519 5.32299 5.43891 5.50269 5.53077 5.70606 5.75663 5.78345 5.82347 5.85678 5.93033 6.01019 6.02282 6.05197 6.06488 6.25530 6.36793 6.39809 6.60667 6.68317 6.80646 6.97745 7.25285 7.63099 7.73252 8.29841 8.32537 9.42948 9.95297 10.31981 11.34553 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.004405 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.340648 B = 6355.479060 C = 7111.376105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.006 4.006 3 Si 0.902 3.098 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.716 5.716 10 C 0.191 3.809 11 H 0.058 0.942 12 C 0.118 3.882 13 N -0.704 5.704 14 C 0.528 3.472 15 O -0.530 6.530 16 C -0.135 4.135 17 C 0.465 3.535 18 F -0.178 7.178 19 F -0.176 7.176 20 F -0.171 7.171 21 C -0.114 4.114 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.106 4.106 25 C -0.178 4.178 26 C -0.162 4.162 27 C -0.175 4.175 28 H 0.256 0.744 29 H 0.386 0.614 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.414 0.586 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.119 0.881 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.415 -9.930 -8.585 13.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.080 3.920 11 H 0.076 0.924 12 C -0.006 4.006 13 N -0.356 5.356 14 C 0.311 3.689 15 O -0.407 6.407 16 C -0.140 4.140 17 C 0.410 3.590 18 F -0.159 7.159 19 F -0.157 7.157 20 F -0.152 7.152 21 C -0.151 4.151 22 C -0.157 4.157 23 C -0.155 4.155 24 C -0.143 4.143 25 C -0.200 4.200 26 C -0.199 4.199 27 C -0.212 4.212 28 H 0.066 0.934 29 H 0.220 0.780 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.253 0.747 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.104 0.896 42 H 0.137 0.863 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.501 -10.520 -8.285 13.622 hybrid contribution 0.676 1.449 -0.191 1.611 sum -1.826 -9.070 -8.476 12.548 Atomic orbital electron populations 1.69638 1.04973 1.25848 1.57124 1.24687 0.95428 0.97488 1.02682 0.86352 0.78636 0.83814 0.77884 1.21294 1.21788 1.21271 1.19113 0.90902 0.83764 1.43320 0.91110 1.42442 1.05780 0.99454 1.88142 1.19998 0.94132 0.86015 0.91826 0.92411 1.21665 0.98990 0.97684 0.82272 1.46119 1.49470 1.21957 1.18102 1.19433 0.79157 0.84733 0.85623 1.90669 1.56440 1.22024 1.71539 1.23086 0.94206 1.02714 0.93954 1.20126 0.84454 0.74376 0.79996 1.93205 1.78667 1.48022 1.96050 1.93166 1.88970 1.90479 1.43122 1.93212 1.75742 1.61721 1.84528 1.22773 0.94452 0.93552 1.04370 1.22381 0.96038 0.96343 1.00940 1.22071 0.95415 0.97633 1.00334 1.22162 0.93604 0.98157 1.00422 1.23054 1.06099 0.95380 0.95436 1.22911 0.96743 1.03480 0.96798 1.22848 0.93482 1.01858 1.02984 0.93419 0.77965 0.91570 0.91310 0.74689 0.88561 0.89211 0.90442 0.90778 0.91269 0.90959 0.90429 0.88547 0.89603 0.86317 0.91294 0.91018 0.87912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.49 13.06 55.49 0.72 -24.77 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 3 Si 0.90 21.11 29.55 -169.99 -5.02 16.08 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.24 -5.87 8.16 -15.06 -0.12 -6.00 16 8 H 0.07 1.72 6.91 -52.49 -0.36 1.36 16 9 N -0.72 -15.50 3.08 -53.43 -0.16 -15.67 16 10 C 0.19 3.46 2.86 -67.93 -0.19 3.26 16 11 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 12 C 0.12 1.96 5.22 -4.04 -0.02 1.94 16 13 N -0.70 -11.61 4.90 -60.29 -0.30 -11.91 16 14 C 0.53 8.48 6.09 -10.98 -0.07 8.41 16 15 O -0.53 -9.61 15.43 5.55 0.09 -9.53 16 16 C -0.13 -1.81 0.32 -154.00 -0.05 -1.86 16 17 C 0.47 6.39 2.23 37.16 0.08 6.47 16 18 F -0.18 -2.55 16.88 2.25 0.04 -2.51 16 19 F -0.18 -2.24 15.78 2.25 0.04 -2.20 16 20 F -0.17 -2.58 14.97 2.25 0.03 -2.55 16 21 C -0.11 -1.44 5.64 -24.56 -0.14 -1.58 16 22 C -0.12 -1.37 6.62 -24.89 -0.16 -1.54 16 23 C -0.12 -1.21 6.80 -25.61 -0.17 -1.38 16 24 C -0.11 -1.23 5.49 -25.61 -0.14 -1.37 16 25 C -0.18 -3.04 5.70 -90.62 -0.52 -3.56 16 26 C -0.16 -2.97 9.74 -26.69 -0.26 -3.23 16 27 C -0.17 -3.07 9.87 -26.70 -0.26 -3.34 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.39 9.11 7.80 -40.82 -0.32 8.79 16 30 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.41 7.16 6.08 -40.82 -0.25 6.91 16 33 H 0.10 1.40 7.64 -51.93 -0.40 1.01 16 34 H 0.09 1.01 7.42 -51.93 -0.39 0.62 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.79 7.29 -51.93 -0.38 0.41 16 40 H 0.10 1.24 6.86 -51.93 -0.36 0.88 16 41 H 0.09 1.31 8.11 -51.93 -0.42 0.89 16 42 H 0.12 2.60 6.68 -51.93 -0.35 2.26 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.10 2.03 6.22 -51.93 -0.32 1.70 16 LS Contribution 367.72 15.07 5.54 5.54 Total: -1.00 -26.79 367.72 -7.62 -34.41 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -6.47 Total: 17.12 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -2.13 Total: -4.03 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: 0.26 Total: -52.35 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 9 Polarization: -7.36 SS G_CDS: 0.11 Total: -7.26 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -26.79 -7.62 -34.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265382977.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.516 kcal (2) G-P(sol) polarization free energy of solvation -26.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds