Wall clock time and date at job start Tue Mar 31 2020 22:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00074 * 2 1 4 4 H 1.48497 * 109.47306 * 240.00325 * 3 2 1 5 5 H 1.48498 * 109.47382 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47182 * 120.00236 * 3 2 1 7 7 C 1.38812 * 119.99438 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99389 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00422 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99983 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47092 * 324.99883 * 10 9 7 12 12 C 1.53000 * 109.47023 * 204.99625 * 10 9 7 13 13 N 1.46507 * 109.46803 * 55.00453 * 12 10 9 14 14 C 1.34773 * 119.99647 * 179.97438 * 13 12 10 15 15 O 1.21284 * 120.00340 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99967 * 179.97438 * 14 13 12 17 17 C 1.52998 * 110.43123 * 59.30143 * 16 14 13 18 18 F 1.39897 * 109.47598 * 60.70038 * 17 16 14 19 19 F 1.39895 * 109.47159 * 180.70265 * 17 16 14 20 20 F 1.39908 * 109.46979 * 300.70090 * 17 16 14 21 21 C 1.54886 * 110.48659 * 296.75868 * 16 14 13 22 22 C 1.55229 * 102.58917 * 279.18522 * 21 16 14 23 23 C 1.54270 * 104.23218 * 322.08461 * 22 21 16 24 24 C 1.53872 * 106.59707 * 23.61001 * 23 22 21 25 25 C 1.52997 * 109.47007 * 84.99832 * 10 9 7 26 26 C 1.52999 * 117.50101 * 8.75019 * 25 10 9 27 27 C 1.52996 * 117.50050 * 300.08878 * 25 10 9 28 28 H 0.97001 * 120.00131 * 359.97438 * 1 2 3 29 29 H 0.96997 * 119.99743 * 0.02562 * 9 7 2 30 30 H 1.09008 * 109.47142 * 174.99638 * 12 10 9 31 31 H 1.08990 * 109.47170 * 295.00136 * 12 10 9 32 32 H 0.96994 * 119.99737 * 359.97438 * 13 12 10 33 33 H 1.09005 * 110.75362 * 37.57748 * 21 16 14 34 34 H 1.09000 * 110.75490 * 160.94095 * 21 16 14 35 35 H 1.09006 * 110.46915 * 203.39206 * 22 21 16 36 36 H 1.08999 * 110.58210 * 80.83318 * 22 21 16 37 37 H 1.08995 * 110.03197 * 264.32587 * 23 22 21 38 38 H 1.08997 * 110.02915 * 142.89294 * 23 22 21 39 39 H 1.09000 * 110.03318 * 240.71446 * 24 23 22 40 40 H 1.09001 * 110.07251 * 119.30810 * 24 23 22 41 41 H 1.09002 * 115.54867 * 154.41632 * 25 10 9 42 42 H 1.08998 * 117.49862 * 359.97438 * 26 25 10 43 43 H 1.09000 * 117.50295 * 145.02180 * 26 25 10 44 44 H 1.09005 * 117.49713 * 214.98330 * 27 25 10 45 45 H 1.08996 * 117.49883 * 359.97027 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9682 -3.5503 -0.5918 12 6 1.1802 -4.7519 -0.6110 13 7 0.7326 -4.3346 -1.9422 14 6 -0.0570 -5.1465 -2.6728 15 8 -0.3974 -6.2223 -2.2281 16 6 -0.5179 -4.7171 -4.0418 17 6 0.6835 -4.4569 -4.9527 18 9 1.4307 -5.6321 -5.0863 19 9 0.2337 -4.0447 -6.2116 20 9 1.4849 -3.4560 -4.3930 21 6 -1.4069 -3.4526 -3.9427 22 6 -2.7871 -4.0398 -3.5431 23 6 -2.8855 -5.3553 -4.3430 24 6 -1.4427 -5.7859 -4.6601 25 6 2.4230 -4.0362 1.4349 26 6 1.8152 -3.1998 2.5626 27 6 3.3010 -3.0612 2.2217 28 1 -0.4850 0.8400 0.0004 29 1 0.3555 -2.3880 -0.0005 30 1 1.7551 -5.6743 -0.6937 31 1 0.3132 -4.9200 0.0277 32 1 1.0046 -3.4741 -2.2976 33 1 -1.0338 -2.7776 -3.1723 34 1 -1.4665 -2.9458 -4.9059 35 1 -3.5885 -3.3585 -3.8292 36 1 -2.8226 -4.2408 -2.4724 37 1 -3.4375 -5.1894 -5.2681 38 1 -3.3804 -6.1201 -3.7444 39 1 -1.2945 -5.8289 -5.7391 40 1 -1.2368 -6.7598 -4.2161 41 1 2.5643 -5.1014 1.6183 42 1 1.1557 -2.3789 2.2812 43 1 1.5572 -3.7144 3.4882 44 1 4.0199 -3.4849 2.9230 45 1 3.6191 -2.1497 1.7158 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265382977.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:58 Heat of formation + Delta-G solvation = -175.640103 kcal Electronic energy + Delta-G solvation = -31393.125503 eV Core-core repulsion = 26802.624613 eV Total energy + Delta-G solvation = -4590.500890 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 13.13 seconds Orbital eigenvalues (eV) -51.32026 -48.80256 -48.76123 -41.50457 -39.36665 -38.16215 -36.01207 -35.09085 -32.80727 -31.71590 -30.03590 -29.48695 -25.99996 -25.64918 -24.67239 -23.18234 -22.75295 -21.61837 -21.24681 -20.52893 -19.75752 -19.35698 -19.28366 -18.94084 -17.58962 -17.22900 -16.82744 -16.33050 -16.16618 -16.10988 -15.67649 -15.54982 -15.46817 -15.19603 -15.16779 -15.00619 -14.92180 -14.73611 -14.60240 -14.34271 -14.15933 -13.70141 -12.98209 -12.84381 -12.78123 -12.65725 -12.60537 -12.49586 -12.39556 -12.17504 -12.15574 -12.12394 -11.96193 -11.58919 -11.41383 -11.13677 -11.01785 -10.81192 -10.62049 -10.13625 -8.97987 -7.86928 -5.14061 1.07759 1.50367 1.51519 1.55908 1.70337 1.93875 2.56831 2.59164 2.68615 2.91736 3.13772 3.42949 3.43264 3.47076 3.61015 3.85974 3.97178 4.09048 4.21290 4.26882 4.29868 4.33288 4.35355 4.48396 4.57271 4.60380 4.63421 4.76100 4.88898 4.91732 4.96791 4.97536 5.12613 5.17601 5.19282 5.21340 5.36358 5.39980 5.48612 5.67544 5.69702 6.32894 6.38333 6.99196 7.41999 8.11028 8.37661 9.34802 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.004405 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.340648 B = 6355.479060 C = 7111.376105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.061 4.061 3 Si 0.953 3.047 4 H -0.283 1.283 5 H -0.302 1.302 6 H -0.285 1.285 7 C -0.221 4.221 8 H 0.073 0.927 9 N -0.718 5.718 10 C 0.191 3.809 11 H 0.056 0.944 12 C 0.126 3.874 13 N -0.707 5.707 14 C 0.526 3.474 15 O -0.551 6.551 16 C -0.132 4.132 17 C 0.467 3.533 18 F -0.181 7.181 19 F -0.167 7.167 20 F -0.181 7.181 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.111 4.111 24 C -0.104 4.104 25 C -0.168 4.168 26 C -0.170 4.170 27 C -0.171 4.171 28 H 0.247 0.753 29 H 0.375 0.625 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.410 0.590 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.051 0.949 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.116 0.884 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.101 0.899 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.002 -11.096 -9.334 14.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.254 4.254 3 Si 0.784 3.216 4 H -0.209 1.209 5 H -0.229 1.229 6 H -0.212 1.212 7 C -0.352 4.352 8 H 0.091 0.909 9 N -0.358 5.358 10 C 0.082 3.918 11 H 0.074 0.926 12 C 0.001 3.999 13 N -0.359 5.359 14 C 0.311 3.689 15 O -0.430 6.430 16 C -0.137 4.137 17 C 0.412 3.588 18 F -0.163 7.163 19 F -0.148 7.148 20 F -0.162 7.162 21 C -0.150 4.150 22 C -0.157 4.157 23 C -0.149 4.149 24 C -0.142 4.142 25 C -0.190 4.190 26 C -0.207 4.207 27 C -0.208 4.208 28 H 0.056 0.944 29 H 0.208 0.792 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.249 0.751 33 H 0.090 0.910 34 H 0.126 0.874 35 H 0.114 0.886 36 H 0.070 0.930 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.134 0.866 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.119 0.881 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.047 -11.714 -9.035 14.934 hybrid contribution 0.600 1.743 0.053 1.844 sum -1.447 -9.971 -8.982 13.498 Atomic orbital electron populations 1.69768 1.06038 1.25564 1.59603 1.25239 0.96012 0.99921 1.04263 0.85522 0.77361 0.80898 0.77799 1.20904 1.22850 1.21151 1.19333 0.90997 0.84612 1.40290 0.90924 1.42461 1.05258 1.00116 1.87989 1.20120 0.93878 0.84956 0.92868 0.92594 1.21573 0.98500 0.97556 0.82225 1.46163 1.49708 1.21875 1.18147 1.19827 0.78434 0.84208 0.86460 1.90654 1.57121 1.22873 1.72358 1.23107 0.94425 1.03798 0.92383 1.20135 0.84262 0.74036 0.80334 1.93200 1.78800 1.48168 1.96087 1.93182 1.88806 1.90366 1.42440 1.93193 1.76100 1.62186 1.84765 1.22783 0.94821 0.92879 1.04508 1.22388 0.95898 0.97517 0.99854 1.22078 0.94760 0.96669 1.01352 1.22227 0.93928 0.96758 1.01287 1.23036 1.05169 0.96835 0.93918 1.22771 0.96660 1.03002 0.98315 1.22836 0.93498 1.01133 1.03332 0.94366 0.79210 0.89937 0.92126 0.75135 0.91040 0.87399 0.88575 0.93006 0.88547 0.90951 0.88504 0.89791 0.86589 0.90317 0.89040 0.88093 0.90417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.13 13.06 21.65 0.28 -53.84 16 2 C -0.06 -3.24 5.50 84.86 0.47 -2.77 16 3 Si 0.95 43.99 29.55 68.60 2.03 46.02 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.22 -10.88 8.16 84.03 0.69 -10.19 16 8 H 0.07 3.53 6.91 -2.91 -0.02 3.51 16 9 N -0.72 -31.45 3.08 -322.94 -0.99 -32.45 16 10 C 0.19 6.78 2.86 44.99 0.13 6.91 16 11 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 12 C 0.13 4.08 5.22 86.38 0.45 4.53 16 13 N -0.71 -23.33 4.90 -463.04 -2.27 -25.59 16 14 C 0.53 16.77 6.09 87.66 0.53 17.30 16 15 O -0.55 -19.82 15.43 -3.04 -0.05 -19.87 16 16 C -0.13 -3.44 0.32 -51.85 -0.02 -3.46 16 17 C 0.47 12.29 2.23 71.98 0.16 12.45 16 18 F -0.18 -4.96 16.88 44.97 0.76 -4.20 16 19 F -0.17 -3.92 15.78 44.97 0.71 -3.21 16 20 F -0.18 -5.39 14.97 44.97 0.67 -4.71 16 21 C -0.11 -2.75 5.64 32.00 0.18 -2.57 16 22 C -0.12 -2.60 6.62 31.79 0.21 -2.39 16 23 C -0.11 -2.05 6.80 31.32 0.21 -1.84 16 24 C -0.10 -2.25 5.49 31.32 0.17 -2.08 16 25 C -0.17 -5.44 5.70 -10.80 -0.06 -5.50 16 26 C -0.17 -6.07 9.74 30.62 0.30 -5.77 16 27 C -0.17 -5.71 9.87 30.62 0.30 -5.41 16 28 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 29 H 0.38 18.20 7.80 -92.71 -0.72 17.48 16 30 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 31 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.41 14.34 6.08 -92.71 -0.56 13.77 16 33 H 0.07 2.12 7.64 -2.38 -0.02 2.11 16 34 H 0.11 2.24 7.42 -2.39 -0.02 2.22 16 35 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.10 1.71 7.29 -2.39 -0.02 1.69 16 40 H 0.08 2.06 6.86 -2.39 -0.02 2.04 16 41 H 0.12 3.12 8.11 -2.39 -0.02 3.11 16 42 H 0.08 3.51 6.68 -2.39 -0.02 3.49 16 43 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 44 H 0.10 2.79 8.14 -2.38 -0.02 2.77 16 45 H 0.08 3.00 6.22 -2.39 -0.01 2.99 16 Total: -1.00 -57.85 367.72 4.62 -53.23 By element: Atomic # 1 Polarization: 45.66 SS G_CDS: -0.25 Total: 45.41 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 3.72 Total: -0.79 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -2.98 Total: -111.88 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.05 Total: -19.87 kcal Atomic # 9 Polarization: -14.27 SS G_CDS: 2.14 Total: -12.12 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -57.85 4.62 -53.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265382977.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.410 kcal (2) G-P(sol) polarization free energy of solvation -57.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.13 seconds