Wall clock time and date at job start Tue Mar 31 2020 22:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00520 * 2 1 4 4 H 1.48496 * 109.47291 * 272.78018 * 3 2 1 5 5 H 1.48506 * 109.46841 * 32.77510 * 3 2 1 6 6 H 1.48496 * 109.47187 * 152.77261 * 3 2 1 7 7 C 1.38815 * 119.99565 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00052 * 350.44676 * 7 2 1 9 9 N 1.36942 * 119.99730 * 170.45197 * 7 2 1 10 10 C 1.47421 * 125.64667 * 133.78279 * 9 7 2 11 11 C 1.54910 * 104.82983 * 204.15642 * 10 9 7 12 12 C 1.55545 * 101.59977 * 322.95704 * 11 10 9 13 13 C 1.47018 * 125.64560 * 313.81470 * 9 7 2 14 14 H 1.09002 * 109.87805 * 59.49828 * 13 9 7 15 15 C 1.52992 * 109.88888 * 298.48068 * 13 9 7 16 16 N 1.46505 * 109.46730 * 60.60997 * 15 13 9 17 17 C 1.34781 * 119.99797 * 186.08221 * 16 15 13 18 18 O 1.21281 * 120.00003 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99993 * 179.97438 * 17 16 15 20 20 C 1.52999 * 110.43527 * 57.45369 * 19 17 16 21 21 F 1.39898 * 109.47274 * 60.70203 * 20 19 17 22 22 F 1.39903 * 109.47334 * 180.70220 * 20 19 17 23 23 F 1.39905 * 109.47099 * 300.69857 * 20 19 17 24 24 C 1.54892 * 110.48564 * 294.76855 * 19 17 16 25 25 C 1.54885 * 102.75238 * 279.26634 * 24 19 17 26 26 C 1.54274 * 104.19139 * 322.05736 * 25 24 19 27 27 C 1.53869 * 106.59949 * 23.60872 * 26 25 24 28 28 H 0.97000 * 119.99454 * 359.97438 * 1 2 3 29 29 H 1.09001 * 110.36945 * 323.00001 * 10 9 7 30 30 H 1.09003 * 110.36553 * 85.21207 * 10 9 7 31 31 H 1.09007 * 110.99719 * 81.06820 * 11 10 9 32 32 H 1.09001 * 111.00228 * 204.87333 * 11 10 9 33 33 H 1.08994 * 110.77998 * 277.24128 * 12 11 10 34 34 H 1.09000 * 110.83227 * 153.84267 * 12 11 10 35 35 H 1.08999 * 109.47759 * 180.60257 * 15 13 9 36 36 H 1.08992 * 109.47572 * 300.61004 * 15 13 9 37 37 H 0.97001 * 120.00236 * 6.07318 * 16 15 13 38 38 H 1.09000 * 110.75499 * 37.58185 * 24 19 17 39 39 H 1.09004 * 110.75389 * 160.94688 * 24 19 17 40 40 H 1.08997 * 110.48755 * 203.37924 * 25 24 19 41 41 H 1.08999 * 110.48507 * 80.72707 * 25 24 19 42 42 H 1.09004 * 110.02926 * 264.32073 * 26 25 24 43 43 H 1.08993 * 110.02889 * 142.89627 * 26 25 24 44 44 H 1.09000 * 110.03403 * 240.71682 * 27 26 25 45 45 H 1.09002 * 110.03157 * 119.28461 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4391 2.0803 -1.3984 5 1 1.4784 2.6350 0.7580 6 1 3.5760 1.4237 0.6405 7 6 2.0102 -1.2022 -0.0005 8 1 1.4814 -2.1311 0.1543 9 7 3.3654 -1.2104 -0.1973 10 6 4.3448 -1.9702 0.6006 11 6 5.6794 -1.2037 0.4250 12 6 5.5893 -0.7554 -1.0617 13 6 4.0845 -0.4623 -1.2388 14 1 3.8987 0.6055 -1.1232 15 6 3.6239 -0.9237 -2.6228 16 7 2.1879 -0.6724 -2.7685 17 6 1.5347 -1.1108 -3.8628 18 8 2.1357 -1.7129 -4.7272 19 6 0.0575 -0.8529 -4.0124 20 6 -0.2320 0.6481 -3.9472 21 9 0.4379 1.2979 -4.9893 22 9 -1.6087 0.8634 -4.0719 23 9 0.2100 1.1554 -2.7206 24 6 -0.7382 -1.6093 -2.9198 25 6 -0.8210 -3.0468 -3.4907 26 6 -1.0212 -2.8408 -5.0065 27 6 -0.4627 -1.4460 -5.3381 28 1 -0.4849 0.8401 0.0004 29 1 4.0504 -1.9839 1.6500 30 1 4.4368 -2.9875 0.2199 31 1 5.7256 -0.3421 1.0912 32 1 6.5326 -1.8634 0.5831 33 1 5.9068 -1.5578 -1.7275 34 1 6.1801 0.1447 -1.2317 35 1 4.1686 -0.3727 -3.3895 36 1 3.8192 -1.9902 -2.7340 37 1 1.7073 -0.1906 -2.0772 38 1 -0.1985 -1.6003 -1.9729 39 1 -1.7343 -1.1824 -2.8021 40 1 -1.6704 -3.5789 -3.0625 41 1 0.1056 -3.5875 -3.2984 42 1 -2.0821 -2.8865 -5.2525 43 1 -0.4755 -3.6034 -5.5621 44 1 -1.2525 -0.8146 -5.7451 45 1 0.3542 -1.5315 -6.0548 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266498288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:57 Heat of formation + Delta-G solvation = -172.790849 kcal Electronic energy + Delta-G solvation = -33071.250641 eV Core-core repulsion = 28480.873304 eV Total energy + Delta-G solvation = -4590.377337 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 44.19 seconds Orbital eigenvalues (eV) -49.81500 -47.31353 -47.23040 -39.90416 -38.19059 -36.64057 -33.98672 -32.74773 -30.67550 -30.09492 -29.15327 -28.36666 -25.21106 -24.46116 -23.82530 -21.65296 -20.76084 -20.33881 -20.03589 -19.29350 -18.17741 -17.83532 -17.62870 -16.89254 -16.15880 -15.73367 -15.35410 -15.02497 -14.78076 -14.27627 -14.08006 -14.02678 -13.85464 -13.68863 -13.54179 -13.39621 -13.32778 -13.19313 -12.99580 -12.88335 -12.55283 -12.22400 -12.04062 -11.35397 -11.32392 -11.24735 -11.19697 -10.98319 -10.88965 -10.78386 -10.74467 -10.66714 -10.50598 -10.42130 -10.20997 -10.04991 -9.59081 -9.33470 -8.78748 -8.28197 -6.81025 -6.21624 -3.75161 2.70589 3.16295 3.25946 3.32747 3.38381 3.63579 4.08984 4.18059 4.27489 4.47147 4.84729 4.86230 4.93547 4.99748 5.15794 5.23763 5.34649 5.45307 5.51782 5.58543 5.61872 5.71201 5.81784 5.87483 5.88304 6.08481 6.08512 6.11854 6.13944 6.22939 6.23810 6.29926 6.37572 6.39698 6.60597 6.62755 6.75486 6.80277 6.83637 7.14384 7.84193 8.17719 8.25684 8.65694 8.81979 9.39688 10.10077 10.90125 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.014509 B = 0.006147 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.326052 B = 4553.944929 C = 5051.699089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.033 3.967 3 Si 0.865 3.135 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.264 1.264 7 C -0.245 4.245 8 H 0.083 0.917 9 N -0.604 5.604 10 C 0.129 3.871 11 C -0.135 4.135 12 C -0.123 4.123 13 C 0.127 3.873 14 H 0.038 0.962 15 C 0.116 3.884 16 N -0.695 5.695 17 C 0.525 3.475 18 O -0.547 6.547 19 C -0.131 4.131 20 C 0.461 3.539 21 F -0.185 7.185 22 F -0.177 7.177 23 F -0.163 7.163 24 C -0.114 4.114 25 C -0.119 4.119 26 C -0.116 4.116 27 C -0.106 4.106 28 H 0.269 0.731 29 H 0.050 0.950 30 H 0.027 0.973 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.424 0.576 38 H 0.123 0.877 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.221 -1.610 -6.006 6.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.169 4.169 3 Si 0.694 3.306 4 H -0.206 1.206 5 H -0.222 1.222 6 H -0.189 1.189 7 C -0.374 4.374 8 H 0.101 0.899 9 N -0.331 5.331 10 C 0.004 3.996 11 C -0.174 4.174 12 C -0.161 4.161 13 C 0.021 3.979 14 H 0.055 0.945 15 C -0.010 4.010 16 N -0.352 5.352 17 C 0.308 3.692 18 O -0.426 6.426 19 C -0.136 4.136 20 C 0.407 3.593 21 F -0.167 7.167 22 F -0.159 7.159 23 F -0.144 7.144 24 C -0.151 4.151 25 C -0.157 4.157 26 C -0.153 4.153 27 C -0.144 4.144 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.045 0.955 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.271 0.729 38 H 0.141 0.859 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.369 -1.866 -6.528 6.926 hybrid contribution 0.096 1.698 0.315 1.729 sum 1.465 -0.168 -6.213 6.386 Atomic orbital electron populations 1.69667 1.05127 1.27208 1.50582 1.25672 0.95491 0.97682 0.98026 0.87112 0.80552 0.84605 0.78292 1.20558 1.22164 1.18916 1.18531 0.79495 0.93340 1.46083 0.89931 1.44663 1.02865 1.54978 1.30551 1.21775 0.88041 0.94108 0.95687 1.22831 0.98338 1.00275 0.95918 1.22561 0.95082 1.01059 0.97431 1.21589 0.91756 0.95988 0.88552 0.94500 1.21925 0.80645 1.01043 0.97409 1.46647 1.10523 1.56225 1.21847 1.19516 0.86989 0.80118 0.82587 1.90600 1.67764 1.42379 1.41898 1.23007 0.97457 0.90004 1.03110 1.20224 0.74310 0.90783 0.73990 1.93168 1.80562 1.84012 1.58914 1.93141 1.31280 1.95785 1.95680 1.93232 1.88846 1.88923 1.43409 1.22811 1.00402 0.93883 0.98017 1.22319 1.02300 0.96556 0.94493 1.22065 1.00515 0.95905 0.96846 1.22149 1.01249 0.96985 0.94012 0.92008 0.93127 0.95474 0.91678 0.91631 0.90974 0.91557 0.93047 0.91327 0.72903 0.85853 0.89782 0.90829 0.91248 0.91532 0.91327 0.90749 0.88913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.97 12.85 55.49 0.71 -22.26 16 2 C 0.03 0.85 3.58 -17.43 -0.06 0.79 16 3 Si 0.87 21.07 23.07 -169.99 -3.92 17.14 16 4 H -0.28 -6.78 7.09 56.52 0.40 -6.38 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.26 -6.33 6.87 56.52 0.39 -5.94 16 7 C -0.25 -6.16 8.99 -15.06 -0.14 -6.29 16 8 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 9 N -0.60 -13.42 2.53 -162.57 -0.41 -13.83 16 10 C 0.13 2.41 7.23 -2.53 -0.02 2.39 16 11 C -0.14 -2.11 7.10 -24.37 -0.17 -2.29 16 12 C -0.12 -1.97 6.51 -24.68 -0.16 -2.13 16 13 C 0.13 2.60 2.44 -66.96 -0.16 2.44 16 14 H 0.04 0.84 3.78 -51.93 -0.20 0.64 16 15 C 0.12 2.37 5.20 -4.04 -0.02 2.35 16 16 N -0.70 -15.51 4.37 -60.30 -0.26 -15.77 16 17 C 0.52 11.18 6.09 -10.98 -0.07 11.12 16 18 O -0.55 -12.21 15.43 5.56 0.09 -12.12 16 19 C -0.13 -2.46 0.33 -154.00 -0.05 -2.51 16 20 C 0.46 8.90 2.23 37.16 0.08 8.98 16 21 F -0.19 -3.50 16.88 2.25 0.04 -3.46 16 22 F -0.18 -3.12 15.79 2.25 0.04 -3.08 16 23 F -0.16 -3.57 13.77 2.25 0.03 -3.54 16 24 C -0.11 -2.10 5.62 -24.74 -0.14 -2.23 16 25 C -0.12 -1.87 6.61 -25.07 -0.17 -2.03 16 26 C -0.12 -1.61 6.80 -25.61 -0.17 -1.78 16 27 C -0.11 -1.67 5.48 -25.62 -0.14 -1.81 16 28 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.04 7.85 -51.93 -0.41 0.63 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.41 8.12 -51.93 -0.42 0.99 16 37 H 0.42 9.86 1.76 -40.82 -0.07 9.79 16 38 H 0.12 2.71 6.94 -51.93 -0.36 2.35 16 39 H 0.08 1.47 7.43 -51.93 -0.39 1.09 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.07 1.04 7.29 -51.93 -0.38 0.66 16 45 H 0.09 1.53 6.89 -51.93 -0.36 1.17 16 LS Contribution 347.78 15.07 5.24 5.24 Total: -1.00 -27.09 347.78 -6.22 -33.31 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -6.38 Total: 11.39 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -1.39 Total: 6.99 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: 0.04 Total: -51.87 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.12 kcal Atomic # 9 Polarization: -10.19 SS G_CDS: 0.10 Total: -10.09 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -3.92 Total: 17.14 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.09 -6.22 -33.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266498288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.479 kcal (2) G-P(sol) polarization free energy of solvation -27.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 44.19 seconds