Wall clock time and date at job start Tue Mar 31 2020 22:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00520 * 2 1 4 4 H 1.48496 * 109.47291 * 272.78018 * 3 2 1 5 5 H 1.48506 * 109.46841 * 32.77510 * 3 2 1 6 6 H 1.48496 * 109.47187 * 152.77261 * 3 2 1 7 7 C 1.38815 * 119.99565 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00052 * 350.44676 * 7 2 1 9 9 N 1.36942 * 119.99730 * 170.45197 * 7 2 1 10 10 C 1.47421 * 125.64667 * 133.78279 * 9 7 2 11 11 C 1.54910 * 104.82983 * 204.15642 * 10 9 7 12 12 C 1.55545 * 101.59977 * 322.95704 * 11 10 9 13 13 C 1.47018 * 125.64560 * 313.81470 * 9 7 2 14 14 H 1.09002 * 109.87805 * 59.49828 * 13 9 7 15 15 C 1.52992 * 109.88888 * 298.48068 * 13 9 7 16 16 N 1.46505 * 109.46730 * 60.60997 * 15 13 9 17 17 C 1.34781 * 119.99797 * 186.08221 * 16 15 13 18 18 O 1.21281 * 120.00003 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99993 * 179.97438 * 17 16 15 20 20 C 1.52999 * 110.43527 * 57.45369 * 19 17 16 21 21 F 1.39898 * 109.47274 * 60.70203 * 20 19 17 22 22 F 1.39903 * 109.47334 * 180.70220 * 20 19 17 23 23 F 1.39905 * 109.47099 * 300.69857 * 20 19 17 24 24 C 1.54892 * 110.48564 * 294.76855 * 19 17 16 25 25 C 1.54885 * 102.75238 * 279.26634 * 24 19 17 26 26 C 1.54274 * 104.19139 * 322.05736 * 25 24 19 27 27 C 1.53869 * 106.59949 * 23.60872 * 26 25 24 28 28 H 0.97000 * 119.99454 * 359.97438 * 1 2 3 29 29 H 1.09001 * 110.36945 * 323.00001 * 10 9 7 30 30 H 1.09003 * 110.36553 * 85.21207 * 10 9 7 31 31 H 1.09007 * 110.99719 * 81.06820 * 11 10 9 32 32 H 1.09001 * 111.00228 * 204.87333 * 11 10 9 33 33 H 1.08994 * 110.77998 * 277.24128 * 12 11 10 34 34 H 1.09000 * 110.83227 * 153.84267 * 12 11 10 35 35 H 1.08999 * 109.47759 * 180.60257 * 15 13 9 36 36 H 1.08992 * 109.47572 * 300.61004 * 15 13 9 37 37 H 0.97001 * 120.00236 * 6.07318 * 16 15 13 38 38 H 1.09000 * 110.75499 * 37.58185 * 24 19 17 39 39 H 1.09004 * 110.75389 * 160.94688 * 24 19 17 40 40 H 1.08997 * 110.48755 * 203.37924 * 25 24 19 41 41 H 1.08999 * 110.48507 * 80.72707 * 25 24 19 42 42 H 1.09004 * 110.02926 * 264.32073 * 26 25 24 43 43 H 1.08993 * 110.02889 * 142.89627 * 26 25 24 44 44 H 1.09000 * 110.03403 * 240.71682 * 27 26 25 45 45 H 1.09002 * 110.03157 * 119.28461 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4391 2.0803 -1.3984 5 1 1.4784 2.6350 0.7580 6 1 3.5760 1.4237 0.6405 7 6 2.0102 -1.2022 -0.0005 8 1 1.4814 -2.1311 0.1543 9 7 3.3654 -1.2104 -0.1973 10 6 4.3448 -1.9702 0.6006 11 6 5.6794 -1.2037 0.4250 12 6 5.5893 -0.7554 -1.0617 13 6 4.0845 -0.4623 -1.2388 14 1 3.8987 0.6055 -1.1232 15 6 3.6239 -0.9237 -2.6228 16 7 2.1879 -0.6724 -2.7685 17 6 1.5347 -1.1108 -3.8628 18 8 2.1357 -1.7129 -4.7272 19 6 0.0575 -0.8529 -4.0124 20 6 -0.2320 0.6481 -3.9472 21 9 0.4379 1.2979 -4.9893 22 9 -1.6087 0.8634 -4.0719 23 9 0.2100 1.1554 -2.7206 24 6 -0.7382 -1.6093 -2.9198 25 6 -0.8210 -3.0468 -3.4907 26 6 -1.0212 -2.8408 -5.0065 27 6 -0.4627 -1.4460 -5.3381 28 1 -0.4849 0.8401 0.0004 29 1 4.0504 -1.9839 1.6500 30 1 4.4368 -2.9875 0.2199 31 1 5.7256 -0.3421 1.0912 32 1 6.5326 -1.8634 0.5831 33 1 5.9068 -1.5578 -1.7275 34 1 6.1801 0.1447 -1.2317 35 1 4.1686 -0.3727 -3.3895 36 1 3.8192 -1.9902 -2.7340 37 1 1.7073 -0.1906 -2.0772 38 1 -0.1985 -1.6003 -1.9729 39 1 -1.7343 -1.1824 -2.8021 40 1 -1.6704 -3.5789 -3.0625 41 1 0.1056 -3.5875 -3.2984 42 1 -2.0821 -2.8865 -5.2525 43 1 -0.4755 -3.6034 -5.5621 44 1 -1.2525 -0.8146 -5.7451 45 1 0.3542 -1.5315 -6.0548 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266498288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:18 Heat of formation + Delta-G solvation = -187.993595 kcal Electronic energy + Delta-G solvation = -33071.909881 eV Core-core repulsion = 28480.873304 eV Total energy + Delta-G solvation = -4591.036577 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 13.41 seconds Orbital eigenvalues (eV) -51.35642 -48.83345 -48.80487 -41.48346 -39.72045 -38.11038 -35.62952 -34.62403 -32.08699 -31.77780 -30.63031 -29.70256 -26.82722 -25.96481 -25.47334 -23.22227 -22.25895 -21.68557 -21.51511 -20.85514 -19.74480 -19.36585 -19.18272 -18.65307 -17.76583 -17.35398 -17.01957 -16.59778 -16.25303 -15.82093 -15.58989 -15.53948 -15.34656 -15.31659 -15.20672 -14.99921 -14.89828 -14.85217 -14.43024 -14.37805 -14.06356 -13.81099 -13.64648 -12.97004 -12.94941 -12.74931 -12.69367 -12.46087 -12.35051 -12.21783 -12.15446 -12.04659 -12.01550 -11.89356 -11.82651 -11.38732 -11.24298 -10.97197 -10.72142 -10.00007 -8.60769 -8.19739 -5.69907 1.10760 1.20838 1.32478 1.38618 1.71854 2.07357 2.30203 2.58061 2.71634 2.92232 3.02743 3.33015 3.46790 3.51053 3.69811 3.84774 3.96944 4.09413 4.13112 4.26450 4.30709 4.33823 4.38788 4.39461 4.54286 4.65267 4.74879 4.81598 4.88408 4.93972 4.98541 5.03380 5.12993 5.15647 5.16254 5.24293 5.31166 5.38873 5.46535 5.50248 5.93573 6.20281 6.55200 6.82896 7.10885 7.46927 8.23125 8.93503 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.014509 B = 0.006147 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.326052 B = 4553.944929 C = 5051.699089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.012 3.988 3 Si 0.896 3.104 4 H -0.283 1.283 5 H -0.305 1.305 6 H -0.257 1.257 7 C -0.236 4.236 8 H 0.049 0.951 9 N -0.620 5.620 10 C 0.120 3.880 11 C -0.123 4.123 12 C -0.116 4.116 13 C 0.120 3.880 14 H 0.018 0.982 15 C 0.112 3.888 16 N -0.710 5.710 17 C 0.519 3.481 18 O -0.561 6.561 19 C -0.132 4.132 20 C 0.459 3.541 21 F -0.184 7.184 22 F -0.166 7.166 23 F -0.182 7.182 24 C -0.112 4.112 25 C -0.115 4.115 26 C -0.108 4.108 27 C -0.104 4.104 28 H 0.265 0.735 29 H 0.043 0.957 30 H 0.034 0.966 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.421 0.579 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.048 0.952 42 H 0.098 0.902 43 H 0.076 0.924 44 H 0.095 0.905 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.125 -2.074 -6.990 7.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.188 4.188 3 Si 0.726 3.274 4 H -0.210 1.210 5 H -0.233 1.233 6 H -0.182 1.182 7 C -0.366 4.366 8 H 0.067 0.933 9 N -0.346 5.346 10 C -0.004 4.004 11 C -0.161 4.161 12 C -0.154 4.154 13 C 0.014 3.986 14 H 0.035 0.965 15 C -0.014 4.014 16 N -0.367 5.367 17 C 0.303 3.697 18 O -0.442 6.442 19 C -0.137 4.137 20 C 0.405 3.595 21 F -0.165 7.165 22 F -0.147 7.147 23 F -0.163 7.163 24 C -0.150 4.150 25 C -0.153 4.153 26 C -0.145 4.145 27 C -0.142 4.142 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.122 0.878 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.266 0.734 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.066 0.934 42 H 0.117 0.883 43 H 0.095 0.905 44 H 0.113 0.887 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.307 -2.342 -7.509 8.197 hybrid contribution -0.187 1.794 0.624 1.909 sum 2.119 -0.548 -6.885 7.225 Atomic orbital electron populations 1.69743 1.05710 1.27017 1.51913 1.25849 0.95708 0.98744 0.98501 0.86621 0.80089 0.82868 0.77798 1.20961 1.23292 1.18170 1.18232 0.81110 0.91936 1.45338 0.93308 1.44814 1.02422 1.55409 1.32002 1.21938 0.89076 0.94563 0.94807 1.22791 0.97543 1.00307 0.95437 1.22625 0.91797 1.02924 0.98084 1.21736 0.94648 0.94463 0.87758 0.96475 1.22030 0.80214 1.00973 0.98141 1.46866 1.11378 1.56337 1.22091 1.19920 0.88068 0.79600 0.82079 1.90574 1.68436 1.42977 1.42210 1.23096 0.95853 0.89705 1.05007 1.20350 0.74769 0.91079 0.73350 1.93167 1.80632 1.84052 1.58657 1.93157 1.30261 1.95747 1.95565 1.93195 1.89159 1.89222 1.44726 1.22726 1.00009 0.95893 0.96396 1.22310 1.02244 0.94643 0.96098 1.22077 1.02566 0.94782 0.95090 1.22248 1.01572 0.98355 0.92041 0.92481 0.93870 0.94752 0.92060 0.87785 0.88996 0.89245 0.91679 0.91711 0.73406 0.89651 0.88985 0.88580 0.93352 0.88330 0.90512 0.88670 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.20 12.85 21.65 0.28 -47.93 16 2 C 0.01 0.64 3.58 84.86 0.30 0.94 16 3 Si 0.90 43.70 23.07 68.60 1.58 45.28 16 4 H -0.28 -13.79 7.09 99.48 0.71 -13.09 16 5 H -0.30 -15.18 7.11 99.48 0.71 -14.48 16 6 H -0.26 -12.07 6.87 99.48 0.68 -11.38 16 7 C -0.24 -12.14 8.99 84.03 0.76 -11.39 16 8 H 0.05 2.82 8.06 -2.91 -0.02 2.80 16 9 N -0.62 -27.45 2.53 -668.26 -1.69 -29.13 16 10 C 0.12 4.34 7.23 86.86 0.63 4.97 16 11 C -0.12 -3.43 7.10 32.12 0.23 -3.20 16 12 C -0.12 -3.35 6.51 31.92 0.21 -3.15 16 13 C 0.12 4.78 2.44 45.34 0.11 4.89 16 14 H 0.02 0.78 3.78 -2.39 -0.01 0.77 16 15 C 0.11 4.54 5.20 86.38 0.45 4.99 16 16 N -0.71 -32.01 4.37 -463.07 -2.02 -34.03 16 17 C 0.52 22.19 6.09 87.66 0.53 22.72 16 18 O -0.56 -24.94 15.43 -3.03 -0.05 -24.99 16 19 C -0.13 -4.90 0.33 -51.85 -0.02 -4.92 16 20 C 0.46 17.54 2.23 71.98 0.16 17.70 16 21 F -0.18 -6.83 16.88 44.97 0.76 -6.07 16 22 F -0.17 -5.65 15.79 44.97 0.71 -4.94 16 23 F -0.18 -8.09 13.77 44.97 0.62 -7.47 16 24 C -0.11 -4.15 5.62 31.88 0.18 -3.97 16 25 C -0.12 -3.50 6.61 31.67 0.21 -3.29 16 26 C -0.11 -2.71 6.80 31.32 0.21 -2.50 16 27 C -0.10 -3.10 5.48 31.32 0.17 -2.93 16 28 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.09 2.31 7.85 -2.39 -0.02 2.29 16 34 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.06 2.64 8.12 -2.39 -0.02 2.62 16 37 H 0.42 19.87 1.76 -92.71 -0.16 19.71 16 38 H 0.08 3.87 6.94 -2.39 -0.02 3.86 16 39 H 0.09 3.18 7.43 -2.38 -0.02 3.16 16 40 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 43 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.09 2.41 7.29 -2.39 -0.02 2.39 16 45 H 0.08 2.67 6.89 -2.39 -0.02 2.65 16 Total: -1.00 -60.07 347.78 5.15 -54.92 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: 0.83 Total: 33.50 kcal Atomic # 6 Polarization: 16.74 SS G_CDS: 4.13 Total: 20.87 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -3.43 Total: -111.09 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.05 Total: -24.99 kcal Atomic # 9 Polarization: -20.57 SS G_CDS: 2.09 Total: -18.49 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.58 Total: 45.28 kcal Total: -60.07 5.15 -54.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266498288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.075 kcal (2) G-P(sol) polarization free energy of solvation -60.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.41 seconds