Wall clock time and date at job start Tue Mar 31 2020 22:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48498 * 109.47670 * 240.00090 * 3 2 1 5 5 H 1.48500 * 109.47161 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46770 * 119.99947 * 3 2 1 7 7 C 1.38812 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00168 * 157.94542 * 7 2 1 9 9 N 1.36935 * 120.00029 * 337.94615 * 7 2 1 10 10 C 1.46496 * 120.00168 * 324.92336 * 9 7 2 11 11 C 1.53003 * 109.46867 * 270.00096 * 10 9 7 12 12 N 1.46503 * 109.46943 * 179.97438 * 11 10 9 13 13 C 1.34775 * 120.00007 * 179.97438 * 12 11 10 14 14 O 1.21280 * 120.00348 * 359.97438 * 13 12 11 15 15 C 1.50705 * 120.00300 * 180.02562 * 13 12 11 16 16 C 1.53002 * 110.43237 * 59.29487 * 15 13 12 17 17 F 1.39907 * 109.46797 * 60.70589 * 16 15 13 18 18 F 1.39904 * 109.46926 * 180.69951 * 16 15 13 19 19 F 1.39893 * 109.47672 * 300.70551 * 16 15 13 20 20 C 1.54890 * 110.48345 * 296.75947 * 15 13 12 21 21 C 1.55244 * 102.58619 * 279.18446 * 20 15 13 22 22 C 1.54266 * 104.23110 * 322.08591 * 21 20 15 23 23 C 1.53875 * 106.60031 * 23.61254 * 22 21 20 24 24 C 1.46503 * 120.00127 * 144.92213 * 9 7 2 25 25 C 1.53004 * 117.49740 * 3.23544 * 24 9 7 26 26 C 1.52995 * 117.49870 * 294.57853 * 24 9 7 27 27 H 0.96995 * 119.99672 * 355.76210 * 1 2 3 28 28 H 1.08995 * 109.47211 * 29.99607 * 10 9 7 29 29 H 1.09000 * 109.47465 * 150.00134 * 10 9 7 30 30 H 1.09001 * 109.46980 * 299.99328 * 11 10 9 31 31 H 1.08994 * 109.47445 * 59.99804 * 11 10 9 32 32 H 0.96998 * 120.00121 * 0.02562 * 12 11 10 33 33 H 1.08997 * 110.75659 * 37.57762 * 20 15 13 34 34 H 1.08996 * 110.75652 * 160.94837 * 20 15 13 35 35 H 1.08998 * 110.46659 * 203.39701 * 21 20 15 36 36 H 1.08998 * 110.57849 * 80.83030 * 21 20 15 37 37 H 1.08999 * 110.02957 * 264.32777 * 22 21 20 38 38 H 1.08996 * 110.03424 * 142.89582 * 22 21 20 39 39 H 1.09003 * 110.03412 * 240.71823 * 23 22 21 40 40 H 1.08997 * 110.07775 * 119.30728 * 23 22 21 41 41 H 1.08999 * 115.55313 * 148.90890 * 24 9 7 42 42 H 1.09001 * 117.49599 * 0.02562 * 25 24 9 43 43 H 1.09000 * 117.49619 * 145.02077 * 25 24 9 44 44 H 1.09002 * 117.50220 * 214.97803 * 26 24 9 45 45 H 1.09001 * 117.50083 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0309 -1.2363 -0.3517 9 7 1.4007 -2.3449 0.4442 10 6 0.4455 -2.2815 1.5531 11 6 1.1885 -2.4679 2.8775 12 7 0.2333 -2.4040 3.9865 13 6 0.6641 -2.5439 5.2559 14 8 1.8424 -2.7232 5.4801 15 6 -0.3185 -2.4787 6.3967 16 6 -1.3825 -3.5681 6.2481 17 9 -0.7684 -4.8251 6.2650 18 9 -2.2920 -3.4792 7.3075 19 9 -2.0599 -3.3963 5.0362 20 6 -0.9805 -1.0799 6.4626 21 6 0.0932 -0.2318 7.1960 22 6 0.6744 -1.1901 8.2560 23 6 0.4127 -2.6187 7.7478 24 6 1.7038 -3.6308 -0.1889 25 6 2.7655 -3.6430 -1.2906 26 6 1.2874 -3.8147 -1.6495 27 1 -0.4849 0.8377 0.0621 28 1 -0.0521 -1.3118 1.5491 29 1 -0.2970 -3.0714 1.4387 30 1 1.6860 -3.4377 2.8816 31 1 1.9309 -1.6781 2.9920 32 1 -0.7093 -2.2617 3.8072 33 1 -1.1647 -0.6921 5.4607 34 1 -1.9044 -1.1166 7.0396 35 1 -0.3660 0.6332 7.6746 36 1 0.8708 0.0857 6.5014 37 1 0.1744 -1.0365 9.2123 38 1 1.7461 -1.0225 8.3633 39 1 -0.2143 -3.1585 8.4574 40 1 1.3569 -3.1451 7.6085 41 1 1.6463 -4.5015 0.4643 42 1 3.2386 -2.6943 -1.5440 43 1 3.4061 -4.5219 -1.3624 44 1 0.9562 -4.8064 -1.9575 45 1 0.7875 -2.9790 -2.1394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267338954.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:40 Heat of formation + Delta-G solvation = -151.264367 kcal Electronic energy + Delta-G solvation = -30841.349921 eV Core-core repulsion = 26251.906043 eV Total energy + Delta-G solvation = -4589.443879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -50.33013 -47.82625 -47.75369 -40.30051 -37.46636 -36.97039 -34.88207 -33.30880 -31.27180 -30.51120 -29.08034 -27.59383 -24.99270 -24.53848 -22.77135 -21.61312 -21.27132 -20.79171 -20.03879 -19.70503 -18.70508 -18.35426 -18.14139 -16.58862 -16.26895 -15.85767 -15.41645 -15.26724 -14.82793 -14.64826 -14.60146 -14.53211 -14.24420 -14.11272 -13.94494 -13.91848 -13.81257 -13.51842 -13.27763 -12.78018 -12.65770 -11.99284 -11.87504 -11.68198 -11.62858 -11.48411 -11.38489 -11.30733 -11.07693 -10.80102 -10.75538 -10.64881 -10.37189 -10.17403 -9.93665 -9.75669 -9.67425 -9.32196 -8.69827 -8.53395 -6.68598 -5.89189 -3.49666 2.19757 2.82367 3.11619 3.31577 3.37061 3.40567 3.53953 3.65204 3.94059 4.29448 4.36475 4.38338 4.66789 4.88213 4.91358 5.03025 5.08471 5.15395 5.24020 5.26531 5.37189 5.53721 5.66209 5.71452 5.87522 5.90352 5.93824 5.98719 6.04741 6.14456 6.15933 6.24045 6.45596 6.47343 6.57411 6.71633 6.92205 7.01760 7.18630 7.46798 7.70388 7.72658 8.30253 8.37346 9.04105 9.66893 10.21984 11.07264 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.013322 B = 0.003845 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.279418 B = 7280.362157 C = 8301.779125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.012 3.988 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.259 4.259 8 H 0.068 0.932 9 N -0.546 5.546 10 C 0.135 3.865 11 C 0.098 3.902 12 N -0.711 5.711 13 C 0.524 3.476 14 O -0.521 6.521 15 C -0.137 4.137 16 C 0.467 3.533 17 F -0.175 7.175 18 F -0.176 7.176 19 F -0.175 7.175 20 C -0.113 4.113 21 C -0.122 4.122 22 C -0.117 4.117 23 C -0.106 4.106 24 C 0.118 3.882 25 C -0.194 4.194 26 C -0.219 4.219 27 H 0.256 0.744 28 H 0.107 0.893 29 H 0.033 0.967 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.401 0.599 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.593 -4.054 15.015 16.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.189 4.189 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.389 4.389 8 H 0.086 0.914 9 N -0.263 5.263 10 C 0.008 3.992 11 C -0.026 4.026 12 N -0.363 5.363 13 C 0.306 3.694 14 O -0.397 6.397 15 C -0.142 4.142 16 C 0.412 3.588 17 F -0.157 7.157 18 F -0.157 7.157 19 F -0.156 7.156 20 C -0.151 4.151 21 C -0.159 4.159 22 C -0.154 4.154 23 C -0.144 4.144 24 C 0.009 3.991 25 C -0.233 4.233 26 C -0.260 4.260 27 H 0.066 0.934 28 H 0.124 0.876 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.236 0.764 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.105 0.895 42 H 0.116 0.884 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.882 -4.045 15.070 16.079 hybrid contribution -0.288 0.641 -0.258 0.749 sum -4.170 -3.404 14.813 15.761 Atomic orbital electron populations 1.70030 1.05480 1.26272 1.50765 1.25122 0.95016 0.98795 0.99919 0.86462 0.79292 0.83183 0.78486 1.20560 1.21531 1.20768 1.19063 0.94550 0.85403 1.39852 0.91427 1.43206 1.49181 1.01737 1.32172 1.21106 0.91015 1.03743 0.83302 1.22426 0.92611 1.01286 0.86307 1.46224 1.12799 1.71510 1.05728 1.19447 0.88629 0.77979 0.83331 1.90694 1.16704 1.48464 1.83879 1.23140 0.94798 0.96149 1.00104 1.20107 0.82052 0.82740 0.73893 1.93225 1.82600 1.43710 1.96123 1.93170 1.69209 1.96203 1.57154 1.93166 1.81691 1.95275 1.45517 1.22747 0.99127 0.90017 1.03160 1.22406 0.97733 0.97886 0.97892 1.22062 1.01884 0.93001 0.98498 1.22168 1.01785 0.99423 0.91028 1.21243 1.00674 0.89919 0.87230 1.23040 0.91926 1.01952 1.06347 1.23353 0.97397 1.00708 1.04545 0.93423 0.87586 0.94886 0.92851 0.91229 0.76367 0.89354 0.89082 0.90438 0.90706 0.91198 0.90813 0.90358 0.88395 0.89459 0.88415 0.90679 0.91158 0.88966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.83 11.33 55.49 0.63 -23.20 16 2 C 0.01 0.31 4.96 -17.43 -0.09 0.22 16 3 Si 0.90 20.81 29.61 -169.99 -5.03 15.78 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.26 -6.71 8.63 -15.06 -0.13 -6.84 16 8 H 0.07 1.76 6.55 -52.49 -0.34 1.42 16 9 N -0.55 -12.93 2.78 -165.67 -0.46 -13.39 16 10 C 0.14 2.94 5.45 -4.04 -0.02 2.92 16 11 C 0.10 1.94 6.00 -4.04 -0.02 1.91 16 12 N -0.71 -11.75 5.06 -60.29 -0.31 -12.05 16 13 C 0.52 8.42 6.09 -10.98 -0.07 8.35 16 14 O -0.52 -9.99 15.43 5.56 0.09 -9.91 16 15 C -0.14 -1.69 0.32 -154.00 -0.05 -1.74 16 16 C 0.47 5.75 2.23 37.16 0.08 5.83 16 17 F -0.18 -2.40 16.88 2.25 0.04 -2.36 16 18 F -0.18 -1.95 15.78 2.25 0.04 -1.92 16 19 F -0.18 -2.23 14.96 2.25 0.03 -2.19 16 20 C -0.11 -1.16 5.64 -24.55 -0.14 -1.30 16 21 C -0.12 -1.21 6.62 -24.88 -0.16 -1.37 16 22 C -0.12 -1.11 6.80 -25.61 -0.17 -1.28 16 23 C -0.11 -1.17 5.50 -25.61 -0.14 -1.31 16 24 C 0.12 2.48 6.56 -67.93 -0.45 2.03 16 25 C -0.19 -3.78 9.80 -26.69 -0.26 -4.05 16 26 C -0.22 -4.38 10.36 -26.70 -0.28 -4.66 16 27 H 0.26 6.69 8.32 -40.82 -0.34 6.35 16 28 H 0.11 2.56 5.36 -51.93 -0.28 2.28 16 29 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.40 5.98 6.41 -40.82 -0.26 5.71 16 33 H 0.09 0.94 7.63 -51.93 -0.40 0.55 16 34 H 0.09 0.78 7.42 -51.93 -0.39 0.39 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.74 7.29 -51.93 -0.38 0.36 16 40 H 0.10 1.24 6.86 -51.93 -0.36 0.89 16 41 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 42 H 0.10 2.07 6.37 -51.93 -0.33 1.74 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 45 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 LS Contribution 369.81 15.07 5.57 5.57 Total: -1.00 -28.38 369.81 -7.82 -36.19 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -6.51 Total: 8.76 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -1.90 Total: -1.28 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: -0.14 Total: -48.65 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 9 Polarization: -6.58 SS G_CDS: 0.11 Total: -6.47 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.38 -7.82 -36.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267338954.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.072 kcal (2) G-P(sol) polarization free energy of solvation -28.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds