Wall clock time and date at job start Tue Mar 31 2020 22:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48498 * 109.47670 * 240.00090 * 3 2 1 5 5 H 1.48500 * 109.47161 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46770 * 119.99947 * 3 2 1 7 7 C 1.38812 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00168 * 157.94542 * 7 2 1 9 9 N 1.36935 * 120.00029 * 337.94615 * 7 2 1 10 10 C 1.46496 * 120.00168 * 324.92336 * 9 7 2 11 11 C 1.53003 * 109.46867 * 270.00096 * 10 9 7 12 12 N 1.46503 * 109.46943 * 179.97438 * 11 10 9 13 13 C 1.34775 * 120.00007 * 179.97438 * 12 11 10 14 14 O 1.21280 * 120.00348 * 359.97438 * 13 12 11 15 15 C 1.50705 * 120.00300 * 180.02562 * 13 12 11 16 16 C 1.53002 * 110.43237 * 59.29487 * 15 13 12 17 17 F 1.39907 * 109.46797 * 60.70589 * 16 15 13 18 18 F 1.39904 * 109.46926 * 180.69951 * 16 15 13 19 19 F 1.39893 * 109.47672 * 300.70551 * 16 15 13 20 20 C 1.54890 * 110.48345 * 296.75947 * 15 13 12 21 21 C 1.55244 * 102.58619 * 279.18446 * 20 15 13 22 22 C 1.54266 * 104.23110 * 322.08591 * 21 20 15 23 23 C 1.53875 * 106.60031 * 23.61254 * 22 21 20 24 24 C 1.46503 * 120.00127 * 144.92213 * 9 7 2 25 25 C 1.53004 * 117.49740 * 3.23544 * 24 9 7 26 26 C 1.52995 * 117.49870 * 294.57853 * 24 9 7 27 27 H 0.96995 * 119.99672 * 355.76210 * 1 2 3 28 28 H 1.08995 * 109.47211 * 29.99607 * 10 9 7 29 29 H 1.09000 * 109.47465 * 150.00134 * 10 9 7 30 30 H 1.09001 * 109.46980 * 299.99328 * 11 10 9 31 31 H 1.08994 * 109.47445 * 59.99804 * 11 10 9 32 32 H 0.96998 * 120.00121 * 0.02562 * 12 11 10 33 33 H 1.08997 * 110.75659 * 37.57762 * 20 15 13 34 34 H 1.08996 * 110.75652 * 160.94837 * 20 15 13 35 35 H 1.08998 * 110.46659 * 203.39701 * 21 20 15 36 36 H 1.08998 * 110.57849 * 80.83030 * 21 20 15 37 37 H 1.08999 * 110.02957 * 264.32777 * 22 21 20 38 38 H 1.08996 * 110.03424 * 142.89582 * 22 21 20 39 39 H 1.09003 * 110.03412 * 240.71823 * 23 22 21 40 40 H 1.08997 * 110.07775 * 119.30728 * 23 22 21 41 41 H 1.08999 * 115.55313 * 148.90890 * 24 9 7 42 42 H 1.09001 * 117.49599 * 0.02562 * 25 24 9 43 43 H 1.09000 * 117.49619 * 145.02077 * 25 24 9 44 44 H 1.09002 * 117.50220 * 214.97803 * 26 24 9 45 45 H 1.09001 * 117.50083 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0309 -1.2363 -0.3517 9 7 1.4007 -2.3449 0.4442 10 6 0.4455 -2.2815 1.5531 11 6 1.1885 -2.4679 2.8775 12 7 0.2333 -2.4040 3.9865 13 6 0.6641 -2.5439 5.2559 14 8 1.8424 -2.7232 5.4801 15 6 -0.3185 -2.4787 6.3967 16 6 -1.3825 -3.5681 6.2481 17 9 -0.7684 -4.8251 6.2650 18 9 -2.2920 -3.4792 7.3075 19 9 -2.0599 -3.3963 5.0362 20 6 -0.9805 -1.0799 6.4626 21 6 0.0932 -0.2318 7.1960 22 6 0.6744 -1.1901 8.2560 23 6 0.4127 -2.6187 7.7478 24 6 1.7038 -3.6308 -0.1889 25 6 2.7655 -3.6430 -1.2906 26 6 1.2874 -3.8147 -1.6495 27 1 -0.4849 0.8377 0.0621 28 1 -0.0521 -1.3118 1.5491 29 1 -0.2970 -3.0714 1.4387 30 1 1.6860 -3.4377 2.8816 31 1 1.9309 -1.6781 2.9920 32 1 -0.7093 -2.2617 3.8072 33 1 -1.1647 -0.6921 5.4607 34 1 -1.9044 -1.1166 7.0396 35 1 -0.3660 0.6332 7.6746 36 1 0.8708 0.0857 6.5014 37 1 0.1744 -1.0365 9.2123 38 1 1.7461 -1.0225 8.3633 39 1 -0.2143 -3.1585 8.4574 40 1 1.3569 -3.1451 7.6085 41 1 1.6463 -4.5015 0.4643 42 1 3.2386 -2.6943 -1.5440 43 1 3.4061 -4.5219 -1.3624 44 1 0.9562 -4.8064 -1.9575 45 1 0.7875 -2.9790 -2.1394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267338954.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:25 Heat of formation + Delta-G solvation = -166.067237 kcal Electronic energy + Delta-G solvation = -30841.991822 eV Core-core repulsion = 26251.906043 eV Total energy + Delta-G solvation = -4590.085779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 15.21 seconds Orbital eigenvalues (eV) -51.32422 -48.80888 -48.76065 -41.51546 -38.97220 -38.25270 -36.41829 -35.05742 -32.85114 -31.77051 -29.98480 -29.20191 -26.42674 -25.88324 -24.15389 -23.12341 -22.81609 -21.67138 -21.60961 -21.03932 -19.79017 -19.35104 -19.21086 -18.18031 -17.54408 -17.38275 -17.11403 -16.51121 -16.28588 -16.00243 -15.76474 -15.58772 -15.53087 -15.26531 -15.16546 -14.93072 -14.84213 -14.58798 -14.46569 -14.43536 -14.13841 -13.78683 -13.30832 -12.93937 -12.81385 -12.64184 -12.55827 -12.49547 -12.42480 -12.20068 -12.16752 -12.13683 -11.94087 -11.71308 -11.43630 -11.39351 -11.13262 -10.91866 -10.50935 -10.18448 -8.59292 -7.85204 -5.49349 1.04933 1.43767 1.46949 1.52921 1.68540 1.85684 2.47570 2.54641 2.66623 2.88688 3.12508 3.38001 3.39720 3.40729 3.47314 3.66114 4.06343 4.18761 4.26350 4.27918 4.31872 4.35397 4.36521 4.49844 4.57544 4.58724 4.70496 4.74537 4.89258 4.93163 4.93867 5.01677 5.11009 5.15328 5.17078 5.25229 5.36475 5.39065 5.53409 5.63962 5.72784 6.33347 6.42490 6.97490 7.10591 7.78282 8.28520 9.07195 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.013322 B = 0.003845 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.279418 B = 7280.362157 C = 8301.779125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.030 4.030 3 Si 0.949 3.051 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.264 4.264 8 H 0.060 0.940 9 N -0.563 5.563 10 C 0.143 3.857 11 C 0.121 3.879 12 N -0.708 5.708 13 C 0.523 3.477 14 O -0.555 6.555 15 C -0.133 4.133 16 C 0.470 3.530 17 F -0.184 7.184 18 F -0.163 7.163 19 F -0.178 7.178 20 C -0.111 4.111 21 C -0.122 4.122 22 C -0.114 4.114 23 C -0.107 4.107 24 C 0.096 3.904 25 C -0.182 4.182 26 C -0.211 4.211 27 H 0.254 0.746 28 H 0.084 0.916 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.040 0.960 32 H 0.409 0.591 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.103 0.897 36 H 0.047 0.953 37 H 0.099 0.901 38 H 0.065 0.935 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.110 0.890 42 H 0.075 0.925 43 H 0.110 0.890 44 H 0.102 0.898 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.289 -4.523 16.376 17.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.228 4.228 3 Si 0.777 3.223 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.394 4.394 8 H 0.078 0.922 9 N -0.281 5.281 10 C 0.016 3.984 11 C -0.005 4.005 12 N -0.360 5.360 13 C 0.307 3.693 14 O -0.434 6.434 15 C -0.138 4.138 16 C 0.415 3.585 17 F -0.166 7.166 18 F -0.145 7.145 19 F -0.159 7.159 20 C -0.148 4.148 21 C -0.160 4.160 22 C -0.151 4.151 23 C -0.145 4.145 24 C -0.011 4.011 25 C -0.220 4.220 26 C -0.252 4.252 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.247 0.753 33 H 0.100 0.900 34 H 0.136 0.864 35 H 0.121 0.879 36 H 0.066 0.934 37 H 0.118 0.882 38 H 0.084 0.916 39 H 0.118 0.882 40 H 0.095 0.905 41 H 0.127 0.873 42 H 0.094 0.906 43 H 0.128 0.872 44 H 0.121 0.879 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.591 -4.526 16.432 17.652 hybrid contribution -0.062 0.718 -0.689 0.997 sum -4.653 -3.808 15.743 16.852 Atomic orbital electron populations 1.70123 1.06345 1.26543 1.52062 1.25678 0.95656 1.01035 1.00383 0.85640 0.78160 0.80298 0.78181 1.20306 1.21461 1.21001 1.19185 0.94383 0.86599 1.39278 0.92238 1.43392 1.49356 1.02226 1.33119 1.20959 0.90959 1.02731 0.83774 1.21901 0.92184 0.99853 0.86577 1.46106 1.12728 1.71709 1.05502 1.20053 0.88946 0.76549 0.83748 1.90677 1.18511 1.49734 1.84435 1.23132 0.94182 0.97604 0.98846 1.20038 0.82121 0.82230 0.74080 1.93211 1.82838 1.44353 1.96175 1.93195 1.68669 1.96108 1.56482 1.93162 1.81719 1.95240 1.45825 1.22859 1.00145 0.88370 1.03474 1.22426 0.97036 0.98909 0.97608 1.22086 1.01807 0.91638 0.99571 1.22234 1.00980 1.00623 0.90616 1.21543 1.02115 0.89464 0.88020 1.23047 0.91917 1.02334 1.04720 1.23257 0.97649 1.01066 1.03223 0.93694 0.89833 0.93947 0.93197 0.94127 0.75315 0.89999 0.86365 0.87863 0.93404 0.88243 0.91629 0.88206 0.90530 0.87288 0.90611 0.87215 0.87949 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.90 11.33 21.65 0.25 -49.66 16 2 C -0.03 -1.57 4.96 84.86 0.42 -1.15 16 3 Si 0.95 43.47 29.61 68.60 2.03 45.50 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 7 C -0.26 -13.94 8.63 84.03 0.73 -13.21 16 8 H 0.06 3.18 6.55 -2.91 -0.02 3.16 16 9 N -0.56 -26.97 2.78 -678.05 -1.88 -28.86 16 10 C 0.14 6.28 5.45 86.38 0.47 6.75 16 11 C 0.12 4.85 6.00 86.38 0.52 5.37 16 12 N -0.71 -23.62 5.06 -463.05 -2.34 -25.96 16 13 C 0.52 16.85 6.09 87.66 0.53 17.39 16 14 O -0.56 -21.75 15.43 -3.03 -0.05 -21.79 16 15 C -0.13 -3.11 0.32 -51.85 -0.02 -3.13 16 16 C 0.47 10.77 2.23 71.98 0.16 10.93 16 17 F -0.18 -4.82 16.88 44.97 0.76 -4.06 16 18 F -0.16 -3.16 15.78 44.97 0.71 -2.45 16 19 F -0.18 -4.28 14.96 44.97 0.67 -3.61 16 20 C -0.11 -2.07 5.64 32.01 0.18 -1.89 16 21 C -0.12 -2.21 6.62 31.79 0.21 -2.00 16 22 C -0.11 -1.91 6.80 31.32 0.21 -1.70 16 23 C -0.11 -2.18 5.50 31.32 0.17 -2.01 16 24 C 0.10 3.96 6.56 44.99 0.30 4.26 16 25 C -0.18 -6.85 9.80 30.62 0.30 -6.55 16 26 C -0.21 -8.21 10.36 30.62 0.32 -7.90 16 27 H 0.25 13.51 8.32 -92.71 -0.77 12.74 16 28 H 0.08 4.14 5.36 -2.39 -0.01 4.13 16 29 H 0.04 1.75 8.07 -2.39 -0.02 1.73 16 30 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.41 12.19 6.41 -92.71 -0.59 11.60 16 33 H 0.08 1.65 7.63 -2.39 -0.02 1.63 16 34 H 0.12 1.60 7.42 -2.39 -0.02 1.59 16 35 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.10 1.60 7.29 -2.39 -0.02 1.58 16 40 H 0.08 1.92 6.86 -2.39 -0.02 1.91 16 41 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 42 H 0.08 3.20 6.37 -2.39 -0.02 3.18 16 43 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 44 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 45 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -62.20 369.81 5.07 -57.13 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: 0.42 Total: 28.59 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 4.50 Total: 5.18 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -3.98 Total: -104.48 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.05 Total: -21.79 kcal Atomic # 9 Polarization: -12.26 SS G_CDS: 2.14 Total: -10.12 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -62.20 5.07 -57.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267338954.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.938 kcal (2) G-P(sol) polarization free energy of solvation -62.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.21 seconds