Wall clock time and date at job start Tue Mar 31 2020 20:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00114 * 2 1 4 4 H 1.48502 * 109.47356 * 240.00087 * 3 2 1 5 5 H 1.48504 * 109.47416 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47373 * 120.00512 * 3 2 1 7 7 C 1.38812 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00210 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99951 * 359.97438 * 7 2 1 10 10 C 1.47430 * 125.64854 * 359.97362 * 9 7 2 11 11 C 1.54909 * 104.83279 * 155.90780 * 10 9 7 12 12 C 1.55156 * 101.58357 * 37.00790 * 11 10 9 13 13 H 1.09002 * 110.71526 * 83.03628 * 12 11 10 14 14 C 1.52998 * 110.72281 * 206.13528 * 12 11 10 15 15 C 1.52992 * 109.47323 * 182.55736 * 14 12 11 16 16 N 1.46496 * 109.47150 * 179.97438 * 15 14 12 17 17 C 1.34787 * 119.99873 * 180.02562 * 16 15 14 18 18 O 1.21697 * 119.99989 * 0.02562 * 17 16 15 19 19 C 1.46657 * 119.99550 * 180.02562 * 17 16 15 20 20 O 1.35389 * 126.12144 * 359.97273 * 19 17 16 21 21 C 1.34401 * 109.47637 * 179.97438 * 20 19 17 22 22 C 1.33901 * 108.56016 * 359.96317 * 21 20 19 23 23 C 1.35190 * 126.11182 * 180.02562 * 19 17 16 24 24 C 1.50723 * 130.58256 * 0.25748 * 23 19 17 25 25 C 1.53673 * 107.44249 * 164.11913 * 24 23 19 26 26 O 1.42906 * 109.97445 * 48.25000 * 25 24 23 27 27 C 1.43515 * 114.76668 * 287.62255 * 26 25 24 28 28 C 1.47321 * 125.61870 * 180.19758 * 9 7 2 29 29 H 0.96997 * 119.99522 * 359.97438 * 1 2 3 30 30 H 1.08996 * 110.36785 * 37.06589 * 10 9 7 31 31 H 1.08999 * 110.45603 * 274.79532 * 10 9 7 32 32 H 1.09002 * 111.00058 * 278.93676 * 11 10 9 33 33 H 1.09001 * 111.03511 * 155.09591 * 11 10 9 34 34 H 1.09001 * 109.46919 * 62.56017 * 14 12 11 35 35 H 1.09004 * 109.46741 * 302.56115 * 14 12 11 36 36 H 1.09004 * 109.47243 * 59.99898 * 15 14 12 37 37 H 1.09000 * 109.47418 * 300.00405 * 15 14 12 38 38 H 0.97001 * 120.00208 * 0.02562 * 16 15 14 39 39 H 1.08003 * 125.72176 * 179.97438 * 21 20 19 40 40 H 1.08995 * 109.86128 * 283.61319 * 24 23 19 41 41 H 1.09004 * 109.86022 * 44.56975 * 24 23 19 42 42 H 1.09005 * 109.38926 * 288.09749 * 25 24 23 43 43 H 1.09000 * 109.38431 * 168.40227 * 25 24 23 44 44 H 1.08997 * 109.81964 * 171.03748 * 27 26 25 45 45 H 1.09001 * 109.82467 * 291.90289 * 27 26 25 46 46 H 1.09004 * 110.06337 * 61.67815 * 28 9 7 47 47 H 1.09003 * 109.84747 * 300.42125 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1416 -2.5331 0.0005 11 6 -0.4022 -3.9323 -0.6112 12 6 0.7782 -4.7525 -0.0270 13 1 0.5451 -5.1006 0.9792 14 6 1.1223 -5.9313 -0.9396 15 6 2.2448 -6.7557 -0.3064 16 7 2.5738 -7.8848 -1.1799 17 6 3.5406 -8.7536 -0.8231 18 8 4.1398 -8.6003 0.2250 19 6 3.8702 -9.8836 -1.6978 20 8 3.2855 -10.1714 -2.8845 21 6 3.8443 -11.2784 -3.4027 22 6 4.7903 -11.7126 -2.5604 23 6 4.8118 -10.8249 -1.4629 24 6 5.7543 -11.0001 -0.2998 25 6 6.3070 -12.4324 -0.3666 26 8 6.7582 -12.7203 -1.6917 27 6 5.7118 -12.9016 -2.6570 28 6 1.9336 -3.7299 0.0031 29 1 -0.4849 0.8401 0.0004 30 1 -0.5999 -1.7588 -0.6146 31 1 -0.5283 -2.4861 1.0186 32 1 -0.3533 -3.8980 -1.6995 33 1 -1.3594 -4.3331 -0.2775 34 1 1.4493 -5.5566 -1.9095 35 1 0.2404 -6.5585 -1.0709 36 1 1.9178 -7.1304 0.6635 37 1 3.1266 -6.1285 -0.1751 38 1 2.0959 -8.0073 -2.0151 39 1 3.5756 -11.7403 -4.3413 40 1 6.5721 -10.2835 -0.3747 41 1 5.2175 -10.8525 0.6373 42 1 5.5219 -13.1365 -0.0908 43 1 7.1404 -12.5314 0.3289 44 1 6.1385 -12.9577 -3.6584 45 1 5.1614 -13.8166 -2.4380 46 1 2.5281 -3.8686 0.9061 47 1 2.5616 -3.8540 -0.8793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267561806.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:41 Heat of formation + Delta-G solvation = -45.723820 kcal Electronic energy + Delta-G solvation = -28034.668436 eV Core-core repulsion = 23991.657879 eV Total energy + Delta-G solvation = -4043.010557 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.21449 -39.64872 -38.95089 -37.80397 -35.40423 -33.95593 -33.07067 -32.45623 -31.00900 -29.68794 -28.86559 -26.74059 -26.58901 -24.94294 -23.99234 -23.18156 -22.08485 -20.47925 -20.14120 -20.03225 -19.33558 -18.31229 -16.94992 -16.88579 -16.68720 -16.44166 -15.90176 -15.68995 -15.59064 -15.30161 -14.86629 -14.57998 -14.31558 -13.86808 -13.71180 -13.57381 -13.44548 -13.05980 -12.63680 -12.52648 -12.28254 -11.98868 -11.93389 -11.71922 -11.57569 -11.31426 -11.07936 -10.90086 -10.73418 -10.60809 -10.19547 -10.15698 -10.00742 -9.91032 -9.84747 -9.73403 -9.45371 -9.33069 -8.93700 -8.61616 -6.79342 -5.61977 -3.03272 0.72993 1.81707 2.31393 2.92246 2.99769 3.35548 3.42696 3.46601 3.48074 4.02156 4.21142 4.45525 4.51969 4.54328 4.77883 4.82767 4.87010 4.91838 5.06519 5.08030 5.24959 5.27999 5.40398 5.46138 5.50129 5.57492 5.58894 5.62221 5.67734 5.76327 5.86512 5.92111 6.01073 6.11935 6.21312 6.28008 6.39447 6.42899 6.62039 6.65102 6.68357 6.78618 6.99377 7.26274 7.55450 7.65945 7.87652 7.88971 8.40026 9.25933 9.86793 10.52351 11.41889 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024083 B = 0.001880 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.366571 B =14886.304022 C =15364.631003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.221 4.221 8 H 0.076 0.924 9 N -0.606 5.606 10 C 0.151 3.849 11 C -0.138 4.138 12 C -0.097 4.097 13 H 0.072 0.928 14 C -0.117 4.117 15 C 0.116 3.884 16 N -0.716 5.716 17 C 0.599 3.401 18 O -0.516 6.516 19 C -0.064 4.064 20 O -0.167 6.167 21 C 0.014 3.986 22 C -0.239 4.239 23 C -0.085 4.085 24 C -0.088 4.088 25 C 0.062 3.938 26 O -0.379 6.379 27 C 0.135 3.865 28 C 0.139 3.861 29 H 0.252 0.748 30 H 0.105 0.895 31 H 0.010 0.990 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.405 0.595 39 H 0.213 0.787 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.054 0.946 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.067 0.933 46 H 0.020 0.980 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.887 -28.735 -6.707 30.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.209 4.209 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.349 4.349 8 H 0.094 0.906 9 N -0.332 5.332 10 C 0.026 3.974 11 C -0.177 4.177 12 C -0.117 4.117 13 H 0.091 0.909 14 C -0.155 4.155 15 C -0.006 4.006 16 N -0.366 5.366 17 C 0.385 3.615 18 O -0.394 6.394 19 C -0.115 4.115 20 O -0.064 6.064 21 C -0.055 4.055 22 C -0.241 4.241 23 C -0.088 4.088 24 C -0.125 4.125 25 C -0.014 4.014 26 O -0.297 6.297 27 C 0.059 3.941 28 C 0.013 3.987 29 H 0.062 0.938 30 H 0.123 0.877 31 H 0.028 0.972 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.239 0.761 39 H 0.229 0.771 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.072 0.928 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.085 0.915 46 H 0.038 0.962 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 6.231 -28.182 -6.085 29.497 hybrid contribution -0.045 0.724 -0.386 0.822 sum 6.186 -27.457 -6.471 28.880 Atomic orbital electron populations 1.69794 1.04871 1.24789 1.57805 1.24789 0.95748 0.97710 1.02620 0.86147 0.78383 0.83051 0.77896 1.21193 1.21593 1.21234 1.19051 0.90489 0.82571 1.42836 0.90602 1.44588 1.01970 0.99774 1.86829 1.21916 0.84675 0.92643 0.98123 1.23040 0.95827 0.98863 0.99984 1.22092 0.97585 0.93716 0.98288 0.90915 1.21801 0.97077 0.96739 0.99883 1.21614 0.99303 0.86326 0.93365 1.45994 1.37674 1.27769 1.25201 1.16509 0.80415 0.80244 0.84341 1.90890 1.52042 1.73477 1.22954 1.21480 1.00674 1.01075 0.88305 1.84317 1.52866 1.38891 1.30277 1.23627 0.95159 0.87164 0.99534 1.21035 1.03170 1.02721 0.97167 1.20215 0.96993 0.93988 0.97557 1.20905 0.97545 0.98224 0.95827 1.22714 1.00217 0.94514 0.83993 1.87995 1.31953 1.91291 1.18481 1.21038 0.87093 0.92289 0.93687 1.21432 0.93667 0.85924 0.97716 0.93752 0.87683 0.97162 0.92196 0.92480 0.91051 0.91524 0.91048 0.90496 0.76074 0.77098 0.88966 0.88324 0.92760 0.87945 0.87567 0.91463 0.96173 0.95898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.27 10.09 55.49 0.56 -26.71 16 2 C -0.01 -0.39 5.49 -17.43 -0.10 -0.48 16 3 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.22 -6.30 10.28 -15.06 -0.15 -6.45 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.61 -15.81 3.40 -169.83 -0.58 -16.39 16 10 C 0.15 3.71 5.89 -2.53 -0.01 3.69 16 11 C -0.14 -2.56 6.54 -24.58 -0.16 -2.72 16 12 C -0.10 -1.63 2.95 -88.79 -0.26 -1.89 16 13 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 14 C -0.12 -1.49 4.72 -26.74 -0.13 -1.62 16 15 C 0.12 1.48 5.54 -4.05 -0.02 1.46 16 16 N -0.72 -8.23 5.55 -61.63 -0.34 -8.57 16 17 C 0.60 7.90 7.79 -12.86 -0.10 7.80 16 18 O -0.52 -8.21 15.63 5.19 0.08 -8.13 16 19 C -0.06 -0.74 7.11 -37.27 -0.27 -1.01 16 20 O -0.17 -1.60 10.44 2.34 0.02 -1.58 16 21 C 0.01 0.10 12.06 29.21 0.35 0.45 16 22 C -0.24 -2.03 6.04 -105.01 -0.63 -2.66 16 23 C -0.08 -0.92 6.02 -104.58 -0.63 -1.55 16 24 C -0.09 -0.86 5.71 -27.52 -0.16 -1.02 16 25 C 0.06 0.48 6.75 37.51 0.25 0.74 16 26 O -0.38 -3.44 10.70 -35.23 -0.38 -3.81 16 27 C 0.14 0.90 7.27 36.03 0.26 1.16 16 28 C 0.14 2.91 6.13 -2.90 -0.02 2.89 16 29 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.11 2.89 5.87 -51.93 -0.30 2.58 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 1.09 8.05 -51.93 -0.42 0.67 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.93 8.00 -51.93 -0.42 0.51 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 1.11 7.58 -51.93 -0.39 0.72 16 38 H 0.40 3.76 8.24 -40.82 -0.34 3.43 16 39 H 0.21 0.50 8.06 -52.48 -0.42 0.08 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.10 1.00 7.64 -51.93 -0.40 0.60 16 42 H 0.05 0.36 8.08 -51.93 -0.42 -0.06 16 43 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.02 0.48 7.73 -51.93 -0.40 0.08 16 LS Contribution 379.78 15.07 5.72 5.72 Total: -1.00 -34.23 379.78 -8.99 -43.21 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -7.28 Total: 0.08 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -1.77 Total: -1.21 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -0.36 Total: -51.68 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.27 Total: -13.52 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.23 -8.99 -43.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267561806.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.511 kcal (2) G-P(sol) polarization free energy of solvation -34.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds