Wall clock time and date at job start Tue Mar 31 2020 20:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00114 * 2 1 4 4 H 1.48502 * 109.47356 * 240.00087 * 3 2 1 5 5 H 1.48504 * 109.47416 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47373 * 120.00512 * 3 2 1 7 7 C 1.38812 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00210 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99951 * 359.97438 * 7 2 1 10 10 C 1.47430 * 125.64854 * 359.97362 * 9 7 2 11 11 C 1.54909 * 104.83279 * 155.90780 * 10 9 7 12 12 C 1.55156 * 101.58357 * 37.00790 * 11 10 9 13 13 H 1.09002 * 110.71526 * 83.03628 * 12 11 10 14 14 C 1.52998 * 110.72281 * 206.13528 * 12 11 10 15 15 C 1.52992 * 109.47323 * 182.55736 * 14 12 11 16 16 N 1.46496 * 109.47150 * 179.97438 * 15 14 12 17 17 C 1.34787 * 119.99873 * 180.02562 * 16 15 14 18 18 O 1.21697 * 119.99989 * 0.02562 * 17 16 15 19 19 C 1.46657 * 119.99550 * 180.02562 * 17 16 15 20 20 O 1.35389 * 126.12144 * 359.97273 * 19 17 16 21 21 C 1.34401 * 109.47637 * 179.97438 * 20 19 17 22 22 C 1.33901 * 108.56016 * 359.96317 * 21 20 19 23 23 C 1.35190 * 126.11182 * 180.02562 * 19 17 16 24 24 C 1.50723 * 130.58256 * 0.25748 * 23 19 17 25 25 C 1.53673 * 107.44249 * 164.11913 * 24 23 19 26 26 O 1.42906 * 109.97445 * 48.25000 * 25 24 23 27 27 C 1.43515 * 114.76668 * 287.62255 * 26 25 24 28 28 C 1.47321 * 125.61870 * 180.19758 * 9 7 2 29 29 H 0.96997 * 119.99522 * 359.97438 * 1 2 3 30 30 H 1.08996 * 110.36785 * 37.06589 * 10 9 7 31 31 H 1.08999 * 110.45603 * 274.79532 * 10 9 7 32 32 H 1.09002 * 111.00058 * 278.93676 * 11 10 9 33 33 H 1.09001 * 111.03511 * 155.09591 * 11 10 9 34 34 H 1.09001 * 109.46919 * 62.56017 * 14 12 11 35 35 H 1.09004 * 109.46741 * 302.56115 * 14 12 11 36 36 H 1.09004 * 109.47243 * 59.99898 * 15 14 12 37 37 H 1.09000 * 109.47418 * 300.00405 * 15 14 12 38 38 H 0.97001 * 120.00208 * 0.02562 * 16 15 14 39 39 H 1.08003 * 125.72176 * 179.97438 * 21 20 19 40 40 H 1.08995 * 109.86128 * 283.61319 * 24 23 19 41 41 H 1.09004 * 109.86022 * 44.56975 * 24 23 19 42 42 H 1.09005 * 109.38926 * 288.09749 * 25 24 23 43 43 H 1.09000 * 109.38431 * 168.40227 * 25 24 23 44 44 H 1.08997 * 109.81964 * 171.03748 * 27 26 25 45 45 H 1.09001 * 109.82467 * 291.90289 * 27 26 25 46 46 H 1.09004 * 110.06337 * 61.67815 * 28 9 7 47 47 H 1.09003 * 109.84747 * 300.42125 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1416 -2.5331 0.0005 11 6 -0.4022 -3.9323 -0.6112 12 6 0.7782 -4.7525 -0.0270 13 1 0.5451 -5.1006 0.9792 14 6 1.1223 -5.9313 -0.9396 15 6 2.2448 -6.7557 -0.3064 16 7 2.5738 -7.8848 -1.1799 17 6 3.5406 -8.7536 -0.8231 18 8 4.1398 -8.6003 0.2250 19 6 3.8702 -9.8836 -1.6978 20 8 3.2855 -10.1714 -2.8845 21 6 3.8443 -11.2784 -3.4027 22 6 4.7903 -11.7126 -2.5604 23 6 4.8118 -10.8249 -1.4629 24 6 5.7543 -11.0001 -0.2998 25 6 6.3070 -12.4324 -0.3666 26 8 6.7582 -12.7203 -1.6917 27 6 5.7118 -12.9016 -2.6570 28 6 1.9336 -3.7299 0.0031 29 1 -0.4849 0.8401 0.0004 30 1 -0.5999 -1.7588 -0.6146 31 1 -0.5283 -2.4861 1.0186 32 1 -0.3533 -3.8980 -1.6995 33 1 -1.3594 -4.3331 -0.2775 34 1 1.4493 -5.5566 -1.9095 35 1 0.2404 -6.5585 -1.0709 36 1 1.9178 -7.1304 0.6635 37 1 3.1266 -6.1285 -0.1751 38 1 2.0959 -8.0073 -2.0151 39 1 3.5756 -11.7403 -4.3413 40 1 6.5721 -10.2835 -0.3747 41 1 5.2175 -10.8525 0.6373 42 1 5.5219 -13.1365 -0.0908 43 1 7.1404 -12.5314 0.3289 44 1 6.1385 -12.9577 -3.6584 45 1 5.1614 -13.8166 -2.4380 46 1 2.5281 -3.8686 0.9061 47 1 2.5616 -3.8540 -0.8793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267561806.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:40 Heat of formation + Delta-G solvation = -69.342396 kcal Electronic energy + Delta-G solvation = -28035.692614 eV Core-core repulsion = 23991.657879 eV Total energy + Delta-G solvation = -4044.034735 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 4.37 seconds Orbital eigenvalues (eV) -43.89444 -40.66891 -39.55454 -39.38922 -36.61889 -34.90098 -34.56396 -33.14018 -32.54620 -30.95166 -30.20302 -28.17073 -27.21235 -26.65020 -24.92411 -24.11877 -23.21779 -21.92945 -21.45035 -20.75926 -20.63081 -19.12866 -18.89467 -17.66998 -17.37062 -17.27960 -16.97666 -16.81828 -16.56930 -16.25476 -16.03807 -15.89184 -15.58602 -15.20570 -14.83060 -14.49919 -14.27956 -14.23254 -13.82265 -13.67051 -13.52711 -13.35634 -13.24446 -13.13589 -12.83469 -12.68485 -12.59450 -12.27447 -12.04138 -11.95304 -11.79500 -11.68981 -11.46092 -11.37700 -11.19953 -10.82559 -10.74061 -10.54892 -10.28721 -9.64968 -8.88324 -7.77943 -5.22230 -0.05141 1.19077 1.44488 1.47961 1.54412 1.57047 1.98869 2.14616 2.48876 2.82003 3.30588 3.38281 3.58828 3.71184 3.73261 3.78487 3.91546 3.92306 4.15546 4.17772 4.27574 4.29316 4.32553 4.37835 4.50545 4.61561 4.67885 4.70329 4.72818 4.77700 4.80377 4.87313 4.95563 4.98651 5.03247 5.08863 5.15883 5.23374 5.24159 5.29697 5.42875 5.50698 5.68877 5.71477 5.83366 6.13385 6.32067 6.37563 6.94611 7.11168 7.78990 8.42898 9.23449 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024083 B = 0.001880 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.366571 B =14886.304022 C =15364.631003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.069 4.069 3 Si 0.981 3.019 4 H -0.276 1.276 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.242 4.242 8 H 0.076 0.924 9 N -0.630 5.630 10 C 0.149 3.851 11 C -0.122 4.122 12 C -0.083 4.083 13 H 0.081 0.919 14 C -0.101 4.101 15 C 0.123 3.877 16 N -0.705 5.705 17 C 0.596 3.404 18 O -0.555 6.555 19 C -0.093 4.093 20 O -0.170 6.170 21 C 0.038 3.962 22 C -0.256 4.256 23 C -0.097 4.097 24 C -0.091 4.091 25 C 0.066 3.934 26 O -0.399 6.399 27 C 0.132 3.868 28 C 0.132 3.868 29 H 0.247 0.753 30 H 0.071 0.929 31 H -0.017 1.017 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.417 0.583 39 H 0.262 0.738 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.116 0.884 44 H 0.128 0.872 45 H 0.087 0.913 46 H 0.013 0.987 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.811 -31.302 -8.631 32.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.262 4.262 3 Si 0.809 3.191 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.371 4.371 8 H 0.094 0.906 9 N -0.356 5.356 10 C 0.024 3.976 11 C -0.160 4.160 12 C -0.103 4.103 13 H 0.099 0.901 14 C -0.138 4.138 15 C 0.000 4.000 16 N -0.356 5.356 17 C 0.383 3.617 18 O -0.436 6.436 19 C -0.144 4.144 20 O -0.067 6.067 21 C -0.030 4.030 22 C -0.258 4.258 23 C -0.100 4.100 24 C -0.128 4.128 25 C -0.010 4.010 26 O -0.317 6.317 27 C 0.056 3.944 28 C 0.007 3.993 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.001 0.999 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.254 0.746 39 H 0.277 0.723 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.084 0.916 43 H 0.134 0.866 44 H 0.146 0.854 45 H 0.105 0.895 46 H 0.031 0.969 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 6.149 -30.779 -8.037 32.400 hybrid contribution 0.007 1.464 0.179 1.475 sum 6.156 -29.315 -7.858 30.968 Atomic orbital electron populations 1.70056 1.06122 1.25071 1.58562 1.25651 0.96731 1.00997 1.02785 0.85117 0.77138 0.78720 0.78145 1.20216 1.21669 1.20657 1.19418 0.90917 0.84093 1.42662 0.90603 1.44938 1.02940 1.00961 1.86750 1.21760 0.83876 0.95569 0.96393 1.22879 0.97921 0.95126 1.00079 1.22000 0.94784 0.93723 0.99763 0.90073 1.21637 0.98234 0.95347 0.98629 1.21421 0.98428 0.86437 0.93744 1.45827 1.37351 1.26952 1.25426 1.16749 0.80084 0.80670 0.84148 1.90859 1.53414 1.74625 1.24700 1.21130 1.02305 1.01452 0.89541 1.84308 1.52985 1.39937 1.29472 1.24614 0.93175 0.85236 1.00009 1.21343 1.04422 1.03310 0.96719 1.20575 0.96611 0.94404 0.98438 1.20907 0.96994 0.99493 0.95389 1.22741 1.01033 0.93112 0.84124 1.87964 1.33402 1.91251 1.19115 1.21334 0.86628 0.92170 0.94224 1.21639 0.95291 0.85027 0.97315 0.94309 0.91068 0.99866 0.91436 0.89484 0.90799 0.88310 0.91112 0.92694 0.74574 0.72253 0.90456 0.89378 0.91595 0.86612 0.85413 0.89465 0.96876 0.95613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.67 10.09 21.65 0.22 -57.45 16 2 C -0.07 -4.04 5.49 84.86 0.47 -3.58 16 3 Si 0.98 46.84 29.55 68.60 2.03 48.87 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 7 C -0.24 -14.10 10.28 84.03 0.86 -13.23 16 8 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 9 N -0.63 -33.60 3.40 -691.21 -2.35 -35.95 16 10 C 0.15 7.46 5.89 86.85 0.51 7.97 16 11 C -0.12 -4.30 6.54 31.99 0.21 -4.09 16 12 C -0.08 -2.65 2.95 -9.61 -0.03 -2.68 16 13 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 14 C -0.10 -2.30 4.72 30.59 0.14 -2.16 16 15 C 0.12 3.00 5.54 86.38 0.48 3.48 16 16 N -0.70 -15.43 5.55 -467.10 -2.59 -18.02 16 17 C 0.60 15.78 7.79 86.44 0.67 16.45 16 18 O -0.56 -18.38 15.63 -4.34 -0.07 -18.44 16 19 C -0.09 -2.10 7.11 23.77 0.17 -1.93 16 20 O -0.17 -2.88 10.44 -14.53 -0.15 -3.03 16 21 C 0.04 0.40 12.06 66.83 0.81 1.20 16 22 C -0.26 -3.73 6.04 -20.12 -0.12 -3.85 16 23 C -0.10 -2.06 6.02 -19.84 -0.12 -2.18 16 24 C -0.09 -1.83 5.71 30.08 0.17 -1.66 16 25 C 0.07 0.97 6.75 72.21 0.49 1.46 16 26 O -0.40 -6.58 10.70 -148.98 -1.59 -8.17 16 27 C 0.13 1.38 7.27 71.25 0.52 1.90 16 28 C 0.13 5.57 6.13 86.67 0.53 6.10 16 29 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 30 H 0.07 4.06 5.87 -2.39 -0.01 4.04 16 31 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 32 H 0.07 2.30 8.05 -2.39 -0.02 2.28 16 33 H 0.09 2.58 8.14 -2.39 -0.02 2.57 16 34 H 0.07 1.71 8.00 -2.39 -0.02 1.69 16 35 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.05 1.59 7.58 -2.39 -0.02 1.58 16 38 H 0.42 6.89 8.24 -92.71 -0.76 6.13 16 39 H 0.26 -0.20 8.06 -2.91 -0.02 -0.22 16 40 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.09 1.91 7.64 -2.38 -0.02 1.89 16 42 H 0.07 0.80 8.08 -2.38 -0.02 0.78 16 43 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.03 1.07 7.73 -2.39 -0.02 1.05 16 Total: -1.00 -78.23 379.78 1.47 -76.76 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.22 Total: 12.23 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 5.76 Total: 3.20 kcal Atomic # 7 Polarization: -106.69 SS G_CDS: -4.73 Total: -111.42 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -1.81 Total: -29.65 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -78.23 1.47 -76.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267561806.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.419 kcal (2) G-P(sol) polarization free energy of solvation -78.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.37 seconds