Wall clock time and date at job start Tue Mar 31 2020 20:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99669 * 2 1 4 4 H 1.48497 * 109.47311 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47099 * 299.99842 * 3 2 1 6 6 H 1.48500 * 109.47306 * 59.99793 * 3 2 1 7 7 C 1.38813 * 120.00732 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00190 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99548 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.65098 * 0.03593 * 9 7 2 11 11 C 1.54909 * 104.83381 * 204.09440 * 10 9 7 12 12 C 1.55157 * 101.57958 * 322.98989 * 11 10 9 13 13 H 1.09002 * 110.72213 * 277.13898 * 12 11 10 14 14 C 1.53001 * 110.87088 * 153.93501 * 12 11 10 15 15 C 1.52996 * 109.47434 * 177.54647 * 14 12 11 16 16 N 1.46497 * 109.47458 * 179.97438 * 15 14 12 17 17 C 1.34777 * 120.00116 * 179.97438 * 16 15 14 18 18 O 1.21693 * 120.00137 * 0.02562 * 17 16 15 19 19 C 1.46658 * 119.99653 * 180.02562 * 17 16 15 20 20 O 1.35389 * 126.12369 * 359.68921 * 19 17 16 21 21 C 1.34400 * 109.47948 * 179.85594 * 20 19 17 22 22 C 1.33897 * 108.56078 * 0.34548 * 21 20 19 23 23 C 1.35186 * 126.11438 * 180.02562 * 19 17 16 24 24 C 1.50721 * 130.58032 * 0.23378 * 23 19 17 25 25 C 1.53681 * 107.44122 * 164.13608 * 24 23 19 26 26 O 1.42899 * 109.97366 * 48.25169 * 25 24 23 27 27 C 1.43516 * 114.76297 * 287.61868 * 26 25 24 28 28 C 1.47018 * 125.64797 * 179.97438 * 9 7 2 29 29 H 0.96996 * 120.00556 * 0.02562 * 1 2 3 30 30 H 1.08998 * 110.36876 * 322.93757 * 10 9 7 31 31 H 1.09009 * 110.36320 * 85.14431 * 10 9 7 32 32 H 1.09000 * 111.00466 * 204.91585 * 11 10 9 33 33 H 1.08997 * 111.00194 * 81.06198 * 11 10 9 34 34 H 1.08999 * 109.47061 * 297.54951 * 14 12 11 35 35 H 1.09006 * 109.46767 * 57.54604 * 14 12 11 36 36 H 1.08999 * 109.47244 * 300.00191 * 15 14 12 37 37 H 1.09005 * 109.46729 * 59.99925 * 15 14 12 38 38 H 0.96998 * 119.99716 * 0.02562 * 16 15 14 39 39 H 1.08005 * 125.71961 * 180.12138 * 21 20 19 40 40 H 1.08996 * 109.86542 * 283.62715 * 24 23 19 41 41 H 1.09006 * 109.86033 * 44.65980 * 24 23 19 42 42 H 1.08993 * 109.39271 * 288.09245 * 25 24 23 43 43 H 1.08998 * 109.38556 * 168.40238 * 25 24 23 44 44 H 1.09006 * 109.82224 * 291.96271 * 27 26 25 45 45 H 1.09000 * 109.82423 * 171.03938 * 27 26 25 46 46 H 1.08998 * 109.88222 * 59.56024 * 28 9 7 47 47 H 1.09005 * 110.01447 * 298.46604 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8913 2.3966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1413 -2.5333 -0.0007 11 6 -0.4019 -3.9323 0.6111 12 6 0.7787 -4.7524 0.0271 13 1 0.5471 -5.0981 -0.9803 14 6 1.1246 -5.9333 0.9365 15 6 2.2493 -6.7536 0.3017 16 7 2.5809 -7.8839 1.1726 17 6 3.5497 -8.7494 0.8140 18 8 4.1494 -8.5918 -0.2331 19 6 3.8812 -9.8813 1.6857 20 8 3.3006 -10.1702 2.8741 21 6 3.8573 -11.2809 3.3867 22 6 4.8025 -11.7126 2.5422 23 6 4.8256 -10.8192 1.4492 24 6 5.7769 -10.9827 0.2916 25 6 6.8736 -11.9651 0.7319 26 8 6.2825 -13.1207 1.3297 27 6 5.7223 -12.9033 2.6330 28 6 1.9320 -3.7274 0.0005 29 1 -0.4851 0.8400 -0.0004 30 1 -0.5998 -1.7589 0.6142 31 1 -0.5264 -2.4851 -1.0194 32 1 -1.3589 -4.3329 0.2768 33 1 -0.3532 -3.8980 1.6994 34 1 1.4502 -5.5608 1.9077 35 1 0.2440 -6.5627 1.0653 36 1 1.9237 -7.1261 -0.6696 37 1 3.1298 -6.1241 0.1728 38 1 2.1026 -8.0098 2.0070 39 1 3.5899 -11.7452 4.3244 40 1 5.2450 -11.3837 -0.5711 41 1 6.2217 -10.0201 0.0390 42 1 7.5270 -11.4776 1.4554 43 1 7.4592 -12.2666 -0.1366 44 1 6.5192 -12.7013 3.3489 45 1 5.1587 -13.7827 2.9445 46 1 2.5580 -3.8509 0.8843 47 1 2.5306 -3.8659 -0.8999 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267561808.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:21 Heat of formation + Delta-G solvation = -46.054548 kcal Electronic energy + Delta-G solvation = -28037.813622 eV Core-core repulsion = 23994.788723 eV Total energy + Delta-G solvation = -4043.024898 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 8.27 seconds Orbital eigenvalues (eV) -43.21504 -39.65054 -38.95094 -37.82138 -35.41113 -33.95638 -33.07698 -32.45646 -31.01730 -29.69240 -28.87623 -26.74084 -26.58956 -24.95063 -23.99369 -23.18423 -22.08796 -20.48110 -20.14324 -20.03558 -19.33748 -18.31326 -16.95831 -16.88875 -16.68907 -16.42897 -15.90451 -15.76114 -15.53461 -15.29242 -14.87407 -14.59091 -14.32392 -13.87215 -13.70822 -13.58142 -13.43161 -13.06405 -12.63499 -12.52841 -12.28812 -11.99157 -11.94129 -11.72616 -11.58413 -11.31245 -11.08748 -10.90294 -10.76782 -10.60913 -10.19485 -10.13030 -9.98968 -9.90745 -9.84863 -9.74676 -9.45980 -9.33135 -8.93763 -8.63011 -6.79819 -5.63055 -3.04340 0.73008 1.81742 2.31369 2.92444 2.99529 3.35533 3.40833 3.46420 3.48951 4.02265 4.21098 4.45573 4.51121 4.54453 4.78532 4.82600 4.87301 4.91967 5.06575 5.08124 5.25244 5.28008 5.40513 5.46296 5.49464 5.57468 5.58526 5.62303 5.67678 5.76213 5.86219 5.91916 6.01016 6.11740 6.21037 6.27901 6.39180 6.42840 6.61912 6.64852 6.68297 6.78264 6.99046 7.26250 7.55146 7.66351 7.87631 7.88337 8.39289 9.25092 9.86200 10.51517 11.40934 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024126 B = 0.001884 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.309647 B =14856.523389 C =15379.708725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.150 3.850 11 C -0.138 4.138 12 C -0.097 4.097 13 H 0.073 0.927 14 C -0.117 4.117 15 C 0.116 3.884 16 N -0.716 5.716 17 C 0.599 3.401 18 O -0.516 6.516 19 C -0.064 4.064 20 O -0.167 6.167 21 C 0.014 3.986 22 C -0.239 4.239 23 C -0.085 4.085 24 C -0.088 4.088 25 C 0.062 3.938 26 O -0.379 6.379 27 C 0.135 3.865 28 C 0.139 3.861 29 H 0.251 0.749 30 H 0.105 0.895 31 H 0.011 0.989 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.405 0.595 39 H 0.213 0.787 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.055 0.945 43 H 0.103 0.897 44 H 0.068 0.932 45 H 0.106 0.894 46 H 0.022 0.978 47 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.488 -27.509 7.738 29.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.209 4.209 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.026 3.974 11 C -0.177 4.177 12 C -0.117 4.117 13 H 0.091 0.909 14 C -0.155 4.155 15 C -0.006 4.006 16 N -0.366 5.366 17 C 0.385 3.615 18 O -0.394 6.394 19 C -0.115 4.115 20 O -0.064 6.064 21 C -0.055 4.055 22 C -0.241 4.241 23 C -0.088 4.088 24 C -0.125 4.125 25 C -0.015 4.015 26 O -0.297 6.297 27 C 0.059 3.941 28 C 0.013 3.987 29 H 0.062 0.938 30 H 0.123 0.877 31 H 0.029 0.971 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.239 0.761 39 H 0.229 0.771 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.073 0.927 43 H 0.121 0.879 44 H 0.086 0.914 45 H 0.124 0.876 46 H 0.040 0.960 47 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 7.656 -27.122 6.981 29.033 hybrid contribution 0.193 0.950 0.571 1.125 sum 7.849 -26.172 7.553 28.348 Atomic orbital electron populations 1.69810 1.04876 1.24572 1.57950 1.24793 0.95745 0.97723 1.02646 0.86001 0.78671 0.83649 0.77221 1.20538 1.21780 1.21774 1.19142 0.90543 0.82539 1.42594 0.90487 1.44529 1.02023 0.99819 1.86772 1.21926 0.84692 0.92653 0.98155 1.23036 0.95850 0.98828 0.99980 1.22093 0.97581 0.93689 0.98331 0.90898 1.21795 0.97075 0.96748 0.99865 1.21613 0.99261 0.86296 0.93438 1.45990 1.37489 1.27843 1.25313 1.16505 0.80479 0.80206 0.84317 1.90889 1.52036 1.73540 1.22893 1.21480 1.00721 1.01054 0.88273 1.84316 1.53120 1.38693 1.30227 1.23626 0.95054 0.87137 0.99670 1.21036 1.03490 1.02278 0.97292 1.20216 0.97378 0.93584 0.97583 1.20906 0.95271 1.01306 0.94997 1.22717 0.93953 0.86559 0.98245 1.87989 1.76256 1.33764 1.31740 1.21040 0.93497 0.94175 0.85402 1.21368 0.93673 0.85942 0.97696 0.93842 0.87687 0.97112 0.92465 0.92188 0.91062 0.91511 0.91027 0.90508 0.76075 0.77099 0.89025 0.88281 0.92709 0.87941 0.91440 0.87570 0.95997 0.96239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.23 10.09 55.49 0.56 -26.67 16 2 C -0.01 -0.40 5.49 -17.43 -0.10 -0.49 16 3 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.22 -6.24 10.27 -15.06 -0.15 -6.40 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.61 -15.77 3.39 -170.07 -0.58 -16.35 16 10 C 0.15 3.68 5.89 -2.53 -0.01 3.67 16 11 C -0.14 -2.56 6.54 -24.58 -0.16 -2.72 16 12 C -0.10 -1.63 2.95 -88.79 -0.26 -1.89 16 13 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 14 C -0.12 -1.49 4.73 -26.73 -0.13 -1.61 16 15 C 0.12 1.48 5.54 -4.05 -0.02 1.46 16 16 N -0.72 -8.23 5.55 -61.63 -0.34 -8.57 16 17 C 0.60 7.90 7.79 -12.86 -0.10 7.80 16 18 O -0.52 -8.21 15.63 5.20 0.08 -8.13 16 19 C -0.06 -0.74 7.11 -37.27 -0.27 -1.01 16 20 O -0.17 -1.60 10.44 2.35 0.02 -1.58 16 21 C 0.01 0.10 12.06 29.21 0.35 0.45 16 22 C -0.24 -2.03 6.04 -105.02 -0.63 -2.66 16 23 C -0.08 -0.92 6.02 -104.58 -0.63 -1.55 16 24 C -0.09 -0.86 5.71 -27.52 -0.16 -1.02 16 25 C 0.06 0.48 6.75 37.51 0.25 0.74 16 26 O -0.38 -3.42 10.70 -35.23 -0.38 -3.79 16 27 C 0.14 0.90 7.27 36.02 0.26 1.16 16 28 C 0.14 2.91 6.10 -3.07 -0.02 2.90 16 29 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.11 2.89 5.87 -51.93 -0.30 2.58 16 31 H 0.01 0.28 8.14 -51.92 -0.42 -0.14 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.09 8.05 -51.93 -0.42 0.67 16 34 H 0.07 0.92 8.00 -51.93 -0.42 0.51 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 1.10 7.58 -51.93 -0.39 0.71 16 38 H 0.40 3.76 8.24 -40.82 -0.34 3.42 16 39 H 0.21 0.50 8.06 -52.48 -0.42 0.08 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.10 1.03 7.64 -51.93 -0.40 0.63 16 42 H 0.05 0.38 8.08 -51.93 -0.42 -0.04 16 43 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.02 0.46 7.73 -51.93 -0.40 0.05 16 47 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 379.77 15.07 5.72 5.72 Total: -1.00 -34.18 379.77 -8.99 -43.17 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -7.28 Total: 0.03 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -1.77 Total: -1.18 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -0.36 Total: -51.59 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.27 Total: -13.50 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.18 -8.99 -43.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267561808.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.884 kcal (2) G-P(sol) polarization free energy of solvation -34.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.27 seconds