Wall clock time and date at job start Tue Mar 31 2020 20:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99669 * 2 1 4 4 H 1.48497 * 109.47311 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47099 * 299.99842 * 3 2 1 6 6 H 1.48500 * 109.47306 * 59.99793 * 3 2 1 7 7 C 1.38813 * 120.00732 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00190 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99548 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.65098 * 0.03593 * 9 7 2 11 11 C 1.54909 * 104.83381 * 204.09440 * 10 9 7 12 12 C 1.55157 * 101.57958 * 322.98989 * 11 10 9 13 13 H 1.09002 * 110.72213 * 277.13898 * 12 11 10 14 14 C 1.53001 * 110.87088 * 153.93501 * 12 11 10 15 15 C 1.52996 * 109.47434 * 177.54647 * 14 12 11 16 16 N 1.46497 * 109.47458 * 179.97438 * 15 14 12 17 17 C 1.34777 * 120.00116 * 179.97438 * 16 15 14 18 18 O 1.21693 * 120.00137 * 0.02562 * 17 16 15 19 19 C 1.46658 * 119.99653 * 180.02562 * 17 16 15 20 20 O 1.35389 * 126.12369 * 359.68921 * 19 17 16 21 21 C 1.34400 * 109.47948 * 179.85594 * 20 19 17 22 22 C 1.33897 * 108.56078 * 0.34548 * 21 20 19 23 23 C 1.35186 * 126.11438 * 180.02562 * 19 17 16 24 24 C 1.50721 * 130.58032 * 0.23378 * 23 19 17 25 25 C 1.53681 * 107.44122 * 164.13608 * 24 23 19 26 26 O 1.42899 * 109.97366 * 48.25169 * 25 24 23 27 27 C 1.43516 * 114.76297 * 287.61868 * 26 25 24 28 28 C 1.47018 * 125.64797 * 179.97438 * 9 7 2 29 29 H 0.96996 * 120.00556 * 0.02562 * 1 2 3 30 30 H 1.08998 * 110.36876 * 322.93757 * 10 9 7 31 31 H 1.09009 * 110.36320 * 85.14431 * 10 9 7 32 32 H 1.09000 * 111.00466 * 204.91585 * 11 10 9 33 33 H 1.08997 * 111.00194 * 81.06198 * 11 10 9 34 34 H 1.08999 * 109.47061 * 297.54951 * 14 12 11 35 35 H 1.09006 * 109.46767 * 57.54604 * 14 12 11 36 36 H 1.08999 * 109.47244 * 300.00191 * 15 14 12 37 37 H 1.09005 * 109.46729 * 59.99925 * 15 14 12 38 38 H 0.96998 * 119.99716 * 0.02562 * 16 15 14 39 39 H 1.08005 * 125.71961 * 180.12138 * 21 20 19 40 40 H 1.08996 * 109.86542 * 283.62715 * 24 23 19 41 41 H 1.09006 * 109.86033 * 44.65980 * 24 23 19 42 42 H 1.08993 * 109.39271 * 288.09245 * 25 24 23 43 43 H 1.08998 * 109.38556 * 168.40238 * 25 24 23 44 44 H 1.09006 * 109.82224 * 291.96271 * 27 26 25 45 45 H 1.09000 * 109.82423 * 171.03938 * 27 26 25 46 46 H 1.08998 * 109.88222 * 59.56024 * 28 9 7 47 47 H 1.09005 * 110.01447 * 298.46604 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8913 2.3966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1413 -2.5333 -0.0007 11 6 -0.4019 -3.9323 0.6111 12 6 0.7787 -4.7524 0.0271 13 1 0.5471 -5.0981 -0.9803 14 6 1.1246 -5.9333 0.9365 15 6 2.2493 -6.7536 0.3017 16 7 2.5809 -7.8839 1.1726 17 6 3.5497 -8.7494 0.8140 18 8 4.1494 -8.5918 -0.2331 19 6 3.8812 -9.8813 1.6857 20 8 3.3006 -10.1702 2.8741 21 6 3.8573 -11.2809 3.3867 22 6 4.8025 -11.7126 2.5422 23 6 4.8256 -10.8192 1.4492 24 6 5.7769 -10.9827 0.2916 25 6 6.8736 -11.9651 0.7319 26 8 6.2825 -13.1207 1.3297 27 6 5.7223 -12.9033 2.6330 28 6 1.9320 -3.7274 0.0005 29 1 -0.4851 0.8400 -0.0004 30 1 -0.5998 -1.7589 0.6142 31 1 -0.5264 -2.4851 -1.0194 32 1 -1.3589 -4.3329 0.2768 33 1 -0.3532 -3.8980 1.6994 34 1 1.4502 -5.5608 1.9077 35 1 0.2440 -6.5627 1.0653 36 1 1.9237 -7.1261 -0.6696 37 1 3.1298 -6.1241 0.1728 38 1 2.1026 -8.0098 2.0070 39 1 3.5899 -11.7452 4.3244 40 1 5.2450 -11.3837 -0.5711 41 1 6.2217 -10.0201 0.0390 42 1 7.5270 -11.4776 1.4554 43 1 7.4592 -12.2666 -0.1366 44 1 6.5192 -12.7013 3.3489 45 1 5.1587 -13.7827 2.9445 46 1 2.5580 -3.8509 0.8843 47 1 2.5306 -3.8659 -0.8999 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267561808.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:51 Heat of formation + Delta-G solvation = -69.605009 kcal Electronic energy + Delta-G solvation = -28038.834846 eV Core-core repulsion = 23994.788723 eV Total energy + Delta-G solvation = -4044.046123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 14.10 seconds Orbital eigenvalues (eV) -43.89502 -40.67062 -39.55623 -39.40693 -36.62362 -34.90345 -34.56456 -33.14228 -32.55319 -30.95989 -30.20552 -28.17121 -27.21301 -26.65781 -24.92720 -24.12093 -23.21801 -21.93440 -21.45117 -20.76000 -20.63107 -19.12966 -18.90317 -17.67400 -17.37261 -17.24107 -17.05037 -16.77756 -16.61100 -16.21800 -16.03627 -15.91428 -15.57764 -15.20415 -14.85179 -14.48196 -14.27873 -14.23214 -13.82319 -13.68169 -13.54212 -13.35891 -13.24471 -13.13668 -12.83801 -12.72879 -12.59430 -12.26738 -11.98389 -11.95832 -11.79636 -11.69592 -11.45786 -11.37756 -11.20385 -10.82758 -10.75742 -10.54905 -10.28760 -9.65022 -8.88399 -7.78585 -5.22841 -0.05086 1.19118 1.44573 1.45661 1.56163 1.57078 1.98959 2.14529 2.48324 2.81598 3.30308 3.38249 3.58744 3.70882 3.73545 3.78470 3.91501 3.92290 4.15480 4.17466 4.27568 4.29224 4.32526 4.37835 4.50514 4.61606 4.67837 4.70321 4.72717 4.77564 4.80244 4.87335 4.95310 4.98609 5.03129 5.08877 5.15898 5.23337 5.24049 5.29657 5.43233 5.50800 5.68782 5.71454 5.83210 6.12811 6.31831 6.37604 6.94661 7.10915 7.78868 8.42580 9.23261 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024126 B = 0.001884 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.309647 B =14856.523389 C =15379.708725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.070 4.070 3 Si 0.980 3.020 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.288 1.288 7 C -0.239 4.239 8 H 0.077 0.923 9 N -0.629 5.629 10 C 0.148 3.852 11 C -0.121 4.121 12 C -0.083 4.083 13 H 0.080 0.920 14 C -0.100 4.100 15 C 0.123 3.877 16 N -0.705 5.705 17 C 0.596 3.404 18 O -0.555 6.555 19 C -0.093 4.093 20 O -0.170 6.170 21 C 0.038 3.962 22 C -0.256 4.256 23 C -0.097 4.097 24 C -0.090 4.090 25 C 0.066 3.934 26 O -0.397 6.397 27 C 0.132 3.868 28 C 0.133 3.867 29 H 0.247 0.753 30 H 0.071 0.929 31 H -0.016 1.016 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.417 0.583 39 H 0.262 0.738 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.117 0.883 44 H 0.085 0.915 45 H 0.130 0.870 46 H 0.026 0.974 47 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.664 -29.904 9.827 32.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.262 4.262 3 Si 0.809 3.191 4 H -0.193 1.193 5 H -0.219 1.219 6 H -0.215 1.215 7 C -0.368 4.368 8 H 0.095 0.905 9 N -0.355 5.355 10 C 0.023 3.977 11 C -0.160 4.160 12 C -0.103 4.103 13 H 0.099 0.901 14 C -0.138 4.138 15 C 0.000 4.000 16 N -0.356 5.356 17 C 0.384 3.616 18 O -0.436 6.436 19 C -0.144 4.144 20 O -0.067 6.067 21 C -0.030 4.030 22 C -0.258 4.258 23 C -0.100 4.100 24 C -0.127 4.127 25 C -0.011 4.011 26 O -0.316 6.316 27 C 0.056 3.944 28 C 0.008 3.992 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.001 0.999 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.254 0.746 39 H 0.278 0.722 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.135 0.865 44 H 0.103 0.897 45 H 0.148 0.852 46 H 0.044 0.956 47 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 7.827 -29.546 9.099 31.891 hybrid contribution 0.158 1.633 -0.048 1.641 sum 7.986 -27.913 9.051 30.411 Atomic orbital electron populations 1.70065 1.06143 1.24933 1.58725 1.25651 0.96722 1.01004 1.02837 0.84976 0.77987 0.79309 0.76856 1.19321 1.21905 1.21493 1.19489 0.90927 0.84040 1.42368 0.90535 1.44875 1.02974 1.01006 1.86689 1.21770 0.83912 0.95569 0.96402 1.22874 0.97923 0.95101 1.00093 1.22002 0.94805 0.93711 0.99763 0.90129 1.21632 0.98196 0.95340 0.98663 1.21419 0.98436 0.86414 0.93757 1.45823 1.37163 1.27031 1.25534 1.16745 0.80152 0.80631 0.84122 1.90858 1.53415 1.74679 1.24644 1.21129 1.02302 1.01472 0.89515 1.84307 1.53224 1.39754 1.29417 1.24614 0.93008 0.85233 1.00172 1.21342 1.04755 1.02835 0.96872 1.20576 0.97006 0.93997 0.98463 1.20904 0.95868 1.01233 0.94735 1.22738 0.93214 0.86022 0.99083 1.87960 1.76467 1.34136 1.33044 1.21336 0.93897 0.94378 0.84751 1.21577 0.95274 0.85039 0.97327 0.94318 0.91067 0.99850 0.89520 0.91397 0.90718 0.88369 0.91215 0.92599 0.74572 0.72249 0.90143 0.89603 0.91840 0.86544 0.89664 0.85244 0.95635 0.96940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.63 10.09 21.65 0.22 -57.41 16 2 C -0.07 -4.07 5.49 84.86 0.47 -3.60 16 3 Si 0.98 46.75 29.55 68.60 2.03 48.78 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 6 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 7 C -0.24 -13.89 10.27 84.03 0.86 -13.02 16 8 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 9 N -0.63 -33.47 3.39 -691.98 -2.35 -35.82 16 10 C 0.15 7.42 5.89 86.85 0.51 7.93 16 11 C -0.12 -4.30 6.54 31.99 0.21 -4.09 16 12 C -0.08 -2.65 2.95 -9.61 -0.03 -2.68 16 13 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 14 C -0.10 -2.29 4.73 30.59 0.14 -2.15 16 15 C 0.12 3.00 5.54 86.38 0.48 3.48 16 16 N -0.70 -15.41 5.55 -467.11 -2.59 -18.01 16 17 C 0.60 15.77 7.79 86.44 0.67 16.44 16 18 O -0.56 -18.37 15.63 -4.33 -0.07 -18.44 16 19 C -0.09 -2.10 7.11 23.77 0.17 -1.93 16 20 O -0.17 -2.87 10.44 -14.51 -0.15 -3.03 16 21 C 0.04 0.40 12.06 66.83 0.81 1.20 16 22 C -0.26 -3.73 6.04 -20.12 -0.12 -3.85 16 23 C -0.10 -2.06 6.02 -19.84 -0.12 -2.18 16 24 C -0.09 -1.82 5.71 30.08 0.17 -1.65 16 25 C 0.07 0.98 6.75 72.21 0.49 1.47 16 26 O -0.40 -6.50 10.70 -148.98 -1.59 -8.09 16 27 C 0.13 1.38 7.27 71.25 0.52 1.90 16 28 C 0.13 5.58 6.10 86.73 0.53 6.10 16 29 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 30 H 0.07 4.05 5.87 -2.39 -0.01 4.04 16 31 H -0.02 -0.89 8.14 -2.38 -0.02 -0.91 16 32 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.07 2.31 8.05 -2.39 -0.02 2.29 16 34 H 0.07 1.72 8.00 -2.39 -0.02 1.70 16 35 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.06 1.61 7.58 -2.38 -0.02 1.59 16 38 H 0.42 6.88 8.24 -92.71 -0.76 6.12 16 39 H 0.26 -0.20 8.06 -2.91 -0.02 -0.23 16 40 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.09 1.91 7.64 -2.38 -0.02 1.90 16 42 H 0.06 0.82 8.08 -2.39 -0.02 0.80 16 43 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 45 H 0.13 0.69 8.14 -2.39 -0.02 0.68 16 46 H 0.03 1.06 7.73 -2.39 -0.02 1.04 16 47 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 Total: -1.00 -78.02 379.77 1.47 -76.55 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.22 Total: 12.09 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: 5.76 Total: 3.38 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -4.72 Total: -111.24 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -1.81 Total: -29.56 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -78.02 1.47 -76.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267561808.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.945 kcal (2) G-P(sol) polarization free energy of solvation -78.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.10 seconds