Wall clock time and date at job start Wed Apr 1 2020 00:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00046 * 2 1 4 4 H 1.48504 * 109.46976 * 269.99990 * 3 2 1 5 5 H 1.48502 * 109.46774 * 29.99778 * 3 2 1 6 6 H 1.48501 * 109.47130 * 149.99941 * 3 2 1 7 7 C 1.38816 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00186 * 0.02562 * 7 2 1 9 9 N 1.36939 * 120.00123 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00227 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47150 * 180.02562 * 10 9 7 12 12 C 1.38241 * 120.00226 * 89.99671 * 11 10 9 13 13 C 1.38230 * 119.99983 * 180.02562 * 12 11 10 14 14 C 1.38234 * 120.00182 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.00195 * 179.97438 * 14 13 12 16 16 N 1.46496 * 109.47174 * 89.99895 * 15 14 13 17 17 C 1.34777 * 120.00271 * 179.97438 * 16 15 14 18 18 O 1.21278 * 119.99854 * 0.02562 * 17 16 15 19 19 C 1.50703 * 120.00161 * 180.02562 * 17 16 15 20 20 O 1.42898 * 109.47171 * 180.02562 * 19 17 16 21 21 C 1.42902 * 114.00186 * 180.02562 * 20 19 17 22 22 H 1.08995 * 110.43251 * 328.90983 * 21 20 19 23 23 C 1.54808 * 110.48919 * 206.21901 * 21 20 19 24 24 C 1.55000 * 102.09288 * 220.44498 * 23 21 20 25 25 O 1.44373 * 103.49022 * 37.02186 * 24 23 21 26 26 C 1.43749 * 106.97579 * 319.94150 * 25 24 23 27 27 C 1.38237 * 119.99973 * 0.25752 * 14 13 12 28 28 C 1.38234 * 119.99939 * 270.01785 * 11 10 9 29 29 H 0.96997 * 120.00183 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99453 * 0.02562 * 9 7 2 31 31 H 1.08991 * 109.47250 * 60.00002 * 10 9 7 32 32 H 1.09001 * 109.46732 * 300.00159 * 10 9 7 33 33 H 1.07999 * 119.99721 * 359.97438 * 12 11 10 34 34 H 1.07998 * 119.99909 * 179.97438 * 13 12 11 35 35 H 1.09002 * 109.47060 * 330.00024 * 15 14 13 36 36 H 1.09001 * 109.47380 * 209.99937 * 15 14 13 37 37 H 0.97005 * 120.00266 * 0.02562 * 16 15 14 38 38 H 1.09002 * 109.47152 * 60.00245 * 19 17 16 39 39 H 1.09001 * 109.46980 * 300.00345 * 19 17 16 40 40 H 1.09001 * 110.90376 * 338.64130 * 23 21 20 41 41 H 1.08999 * 110.91212 * 102.24045 * 23 21 20 42 42 H 1.09001 * 110.61238 * 278.51934 * 24 23 21 43 43 H 1.08994 * 110.61668 * 155.52512 * 24 23 21 44 44 H 1.09001 * 109.88002 * 267.08901 * 26 25 24 45 45 H 1.09000 * 110.00302 * 146.01106 * 26 25 24 46 46 H 1.08001 * 119.99912 * 179.72830 * 27 14 13 47 47 H 1.08000 * 120.00083 * 0.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0000 10 6 4.1122 -2.4709 0.0000 11 6 5.5938 -2.1955 0.0000 12 6 6.2734 -2.0691 1.1972 13 6 7.6323 -1.8159 1.1971 14 6 8.3118 -1.6897 0.0000 15 6 9.7932 -1.4131 -0.0001 16 7 10.5267 -2.6812 0.0006 17 6 11.8745 -2.6802 0.0002 18 8 12.4801 -1.6294 -0.0004 19 6 12.6290 -3.9848 0.0003 20 8 14.0338 -3.7225 0.0003 21 6 14.8447 -4.8992 -0.0001 22 1 14.3405 -5.7090 0.5270 23 6 16.2234 -4.6073 0.6406 24 6 17.1851 -5.3944 -0.2857 25 8 16.6065 -5.2213 -1.5970 26 6 15.1808 -5.3220 -1.4433 27 6 7.6314 -1.8113 -1.1972 28 6 6.2732 -2.0688 -1.1971 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3621 -0.0004 31 1 3.8486 -3.0426 -0.8897 32 1 3.8492 -3.0422 0.8902 33 1 5.7424 -2.1673 2.1325 34 1 8.1631 -1.7168 2.1324 35 1 10.0560 -0.8409 0.8896 36 1 10.0562 -0.8418 -0.8904 37 1 10.0424 -3.5217 0.0006 38 1 12.3659 -4.5568 -0.8895 39 1 12.3664 -4.5563 0.8905 40 1 16.4457 -3.5405 0.6159 41 1 16.2669 -4.9887 1.6608 42 1 17.2051 -6.4490 -0.0110 43 1 18.1876 -4.9681 -0.2492 44 1 14.8615 -6.3504 -1.6121 45 1 14.6818 -4.6585 -2.1497 46 1 8.1615 -1.7083 -2.1325 47 1 5.7422 -2.1668 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267936516.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:25 Heat of formation + Delta-G solvation = -83.531995 kcal Electronic energy + Delta-G solvation = -26852.242238 eV Core-core repulsion = 22807.592196 eV Total energy + Delta-G solvation = -4044.650042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 20.92 seconds Orbital eigenvalues (eV) -40.48097 -39.92354 -39.22553 -37.43819 -35.70260 -34.51931 -32.31854 -31.97324 -30.90131 -30.76624 -29.53310 -28.56911 -26.75906 -24.37083 -23.29948 -22.67046 -22.09094 -21.90500 -21.00666 -20.63741 -17.99553 -17.93950 -17.83616 -17.03737 -16.56060 -16.26655 -15.93518 -15.61842 -15.51336 -15.24259 -14.93320 -14.64718 -14.41069 -14.25470 -13.70601 -13.45158 -13.39001 -13.08595 -13.03859 -12.93121 -12.77398 -12.49053 -12.35514 -12.16569 -12.06307 -11.99763 -11.53154 -11.34762 -11.00447 -10.85208 -10.69063 -10.52203 -10.23687 -10.16521 -10.02851 -9.64480 -9.43504 -8.96799 -8.87526 -8.64126 -7.29993 -5.81582 -3.18079 1.18704 1.45352 2.24523 2.40433 3.32660 3.35618 3.39710 3.42179 3.43860 3.82475 3.89191 4.25670 4.28274 4.37069 4.51215 4.55778 4.56588 4.56740 4.63653 4.74602 4.79965 4.93282 5.01874 5.11145 5.15390 5.17395 5.17583 5.28271 5.43998 5.45953 5.48289 5.55580 5.67889 5.68495 5.98707 6.00055 6.01863 6.22543 6.31655 6.43473 6.45583 6.49272 6.51946 6.91762 7.03070 7.12464 7.85051 7.93106 8.36988 9.15369 9.87632 10.07173 11.36436 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.036741 B = 0.001547 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.902486 B =18096.960926 C =18334.231226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.008 3.992 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.091 0.909 9 N -0.750 5.750 10 C 0.189 3.811 11 C -0.070 4.070 12 C -0.107 4.107 13 C -0.103 4.103 14 C -0.124 4.124 15 C 0.167 3.833 16 N -0.723 5.723 17 C 0.512 3.488 18 O -0.519 6.519 19 C 0.041 3.959 20 O -0.347 6.347 21 C 0.053 3.947 22 H 0.081 0.919 23 C -0.153 4.153 24 C 0.046 3.954 25 O -0.372 6.372 26 C 0.023 3.977 27 C -0.103 4.103 28 C -0.108 4.108 29 H 0.260 0.740 30 H 0.363 0.637 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.403 0.597 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.064 0.936 43 H 0.099 0.901 44 H 0.066 0.934 45 H 0.094 0.906 46 H 0.121 0.879 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.265 -14.161 1.173 35.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.188 4.188 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.109 0.891 9 N -0.396 5.396 10 C 0.063 3.937 11 C -0.071 4.071 12 C -0.126 4.126 13 C -0.122 4.122 14 C -0.125 4.125 15 C 0.045 3.955 16 N -0.377 5.377 17 C 0.297 3.703 18 O -0.393 6.393 19 C -0.039 4.039 20 O -0.265 6.265 21 C -0.005 4.005 22 H 0.099 0.901 23 C -0.190 4.190 24 C -0.030 4.030 25 O -0.291 6.291 26 C -0.054 4.054 27 C -0.122 4.122 28 C -0.126 4.126 29 H 0.070 0.930 30 H 0.196 0.804 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.144 0.856 34 H 0.138 0.862 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.237 0.763 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.117 0.883 44 H 0.084 0.916 45 H 0.112 0.888 46 H 0.139 0.861 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 32.660 -13.234 0.975 35.253 hybrid contribution -0.139 0.528 0.221 0.589 sum 32.521 -12.706 1.196 34.935 Atomic orbital electron populations 1.69696 1.05089 1.25934 1.57236 1.24651 0.95206 0.97198 1.01765 0.86567 0.79272 0.84940 0.77907 1.20984 1.21606 1.20276 1.19055 0.80369 0.94842 1.43536 0.89083 1.42684 1.03898 1.01797 1.91226 1.19669 0.84643 0.89828 0.99605 1.20458 0.97112 0.96629 0.92877 1.21172 0.93844 0.99269 0.98310 1.21020 0.94481 0.99533 0.97160 1.19697 0.94338 1.04607 0.93858 1.20168 0.86939 0.85233 1.03162 1.46009 1.05555 1.10174 1.75974 1.20197 0.82343 0.90823 0.76959 1.90760 1.67970 1.32994 1.47602 1.22303 0.83166 0.95606 1.02851 1.88126 1.14234 1.29231 1.94875 1.23644 0.92783 0.88271 0.95830 0.90145 1.23231 0.92507 1.03510 0.99781 1.23570 0.97978 0.99285 0.82172 1.88924 1.18155 1.93788 1.28224 1.23767 0.83034 1.01237 0.97391 1.21029 0.94491 0.99495 0.97166 1.21177 0.93861 0.99286 0.98309 0.92967 0.80437 0.94493 0.94560 0.85598 0.86169 0.90572 0.90554 0.76263 0.90014 0.89913 0.88730 0.89270 0.91824 0.88321 0.91626 0.88771 0.86139 0.85556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.07 13.97 55.49 0.78 -28.30 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 22.16 27.74 -169.99 -4.71 17.45 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 7 C -0.25 -6.97 10.47 -15.06 -0.16 -7.13 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 9 N -0.75 -17.68 5.40 -61.09 -0.33 -18.01 16 10 C 0.19 3.54 6.38 -5.20 -0.03 3.51 16 11 C -0.07 -1.08 5.25 -104.62 -0.55 -1.62 16 12 C -0.11 -1.47 9.70 -39.58 -0.38 -1.85 16 13 C -0.10 -1.18 9.70 -39.59 -0.38 -1.56 16 14 C -0.12 -1.33 5.25 -104.62 -0.55 -1.88 16 15 C 0.17 1.62 5.80 -5.20 -0.03 1.59 16 16 N -0.72 -5.78 5.55 -61.47 -0.34 -6.12 16 17 C 0.51 5.04 7.91 -10.98 -0.09 4.96 16 18 O -0.52 -7.66 16.50 -14.35 -0.24 -7.90 16 19 C 0.04 0.26 6.28 36.01 0.23 0.49 16 20 O -0.35 -3.14 9.49 -55.14 -0.52 -3.66 16 21 C 0.05 0.32 3.51 -25.21 -0.09 0.23 16 22 H 0.08 0.28 7.86 -51.93 -0.41 -0.13 16 23 C -0.15 -0.84 6.90 -24.72 -0.17 -1.01 16 24 C 0.05 0.24 7.72 38.21 0.29 0.54 16 25 O -0.37 -3.20 11.52 -35.23 -0.41 -3.60 16 26 C 0.02 0.15 7.52 37.73 0.28 0.43 16 27 C -0.10 -1.18 9.70 -39.58 -0.38 -1.56 16 28 C -0.11 -1.47 9.70 -39.58 -0.38 -1.85 16 29 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 30 H 0.36 8.52 5.52 -40.82 -0.23 8.30 16 31 H 0.04 0.69 8.09 -51.93 -0.42 0.27 16 32 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 33 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 36 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.40 2.25 8.46 -40.82 -0.35 1.90 16 38 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.32 8.10 -51.93 -0.42 -0.10 16 40 H 0.09 0.67 8.09 -51.93 -0.42 0.25 16 41 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.09 0.68 7.97 -51.93 -0.41 0.27 16 46 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 47 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 395.84 15.07 5.97 5.97 Total: -1.00 -36.19 395.84 -9.61 -45.80 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -7.31 Total: 4.96 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -2.49 Total: -6.58 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: 0.10 Total: -52.43 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -1.17 Total: -15.17 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.45 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.19 -9.61 -45.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267936516.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.728 kcal (2) G-P(sol) polarization free energy of solvation -36.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 20.92 seconds