Wall clock time and date at job start Wed Apr 1 2020 00:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00046 * 2 1 4 4 H 1.48504 * 109.46976 * 269.99990 * 3 2 1 5 5 H 1.48502 * 109.46774 * 29.99778 * 3 2 1 6 6 H 1.48501 * 109.47130 * 149.99941 * 3 2 1 7 7 C 1.38816 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00186 * 0.02562 * 7 2 1 9 9 N 1.36939 * 120.00123 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00227 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47150 * 180.02562 * 10 9 7 12 12 C 1.38241 * 120.00226 * 89.99671 * 11 10 9 13 13 C 1.38230 * 119.99983 * 180.02562 * 12 11 10 14 14 C 1.38234 * 120.00182 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.00195 * 179.97438 * 14 13 12 16 16 N 1.46496 * 109.47174 * 89.99895 * 15 14 13 17 17 C 1.34777 * 120.00271 * 179.97438 * 16 15 14 18 18 O 1.21278 * 119.99854 * 0.02562 * 17 16 15 19 19 C 1.50703 * 120.00161 * 180.02562 * 17 16 15 20 20 O 1.42898 * 109.47171 * 180.02562 * 19 17 16 21 21 C 1.42902 * 114.00186 * 180.02562 * 20 19 17 22 22 H 1.08995 * 110.43251 * 328.90983 * 21 20 19 23 23 C 1.54808 * 110.48919 * 206.21901 * 21 20 19 24 24 C 1.55000 * 102.09288 * 220.44498 * 23 21 20 25 25 O 1.44373 * 103.49022 * 37.02186 * 24 23 21 26 26 C 1.43749 * 106.97579 * 319.94150 * 25 24 23 27 27 C 1.38237 * 119.99973 * 0.25752 * 14 13 12 28 28 C 1.38234 * 119.99939 * 270.01785 * 11 10 9 29 29 H 0.96997 * 120.00183 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99453 * 0.02562 * 9 7 2 31 31 H 1.08991 * 109.47250 * 60.00002 * 10 9 7 32 32 H 1.09001 * 109.46732 * 300.00159 * 10 9 7 33 33 H 1.07999 * 119.99721 * 359.97438 * 12 11 10 34 34 H 1.07998 * 119.99909 * 179.97438 * 13 12 11 35 35 H 1.09002 * 109.47060 * 330.00024 * 15 14 13 36 36 H 1.09001 * 109.47380 * 209.99937 * 15 14 13 37 37 H 0.97005 * 120.00266 * 0.02562 * 16 15 14 38 38 H 1.09002 * 109.47152 * 60.00245 * 19 17 16 39 39 H 1.09001 * 109.46980 * 300.00345 * 19 17 16 40 40 H 1.09001 * 110.90376 * 338.64130 * 23 21 20 41 41 H 1.08999 * 110.91212 * 102.24045 * 23 21 20 42 42 H 1.09001 * 110.61238 * 278.51934 * 24 23 21 43 43 H 1.08994 * 110.61668 * 155.52512 * 24 23 21 44 44 H 1.09001 * 109.88002 * 267.08901 * 26 25 24 45 45 H 1.09000 * 110.00302 * 146.01106 * 26 25 24 46 46 H 1.08001 * 119.99912 * 179.72830 * 27 14 13 47 47 H 1.08000 * 120.00083 * 0.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0000 10 6 4.1122 -2.4709 0.0000 11 6 5.5938 -2.1955 0.0000 12 6 6.2734 -2.0691 1.1972 13 6 7.6323 -1.8159 1.1971 14 6 8.3118 -1.6897 0.0000 15 6 9.7932 -1.4131 -0.0001 16 7 10.5267 -2.6812 0.0006 17 6 11.8745 -2.6802 0.0002 18 8 12.4801 -1.6294 -0.0004 19 6 12.6290 -3.9848 0.0003 20 8 14.0338 -3.7225 0.0003 21 6 14.8447 -4.8992 -0.0001 22 1 14.3405 -5.7090 0.5270 23 6 16.2234 -4.6073 0.6406 24 6 17.1851 -5.3944 -0.2857 25 8 16.6065 -5.2213 -1.5970 26 6 15.1808 -5.3220 -1.4433 27 6 7.6314 -1.8113 -1.1972 28 6 6.2732 -2.0688 -1.1971 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3621 -0.0004 31 1 3.8486 -3.0426 -0.8897 32 1 3.8492 -3.0422 0.8902 33 1 5.7424 -2.1673 2.1325 34 1 8.1631 -1.7168 2.1324 35 1 10.0560 -0.8409 0.8896 36 1 10.0562 -0.8418 -0.8904 37 1 10.0424 -3.5217 0.0006 38 1 12.3659 -4.5568 -0.8895 39 1 12.3664 -4.5563 0.8905 40 1 16.4457 -3.5405 0.6159 41 1 16.2669 -4.9887 1.6608 42 1 17.2051 -6.4490 -0.0110 43 1 18.1876 -4.9681 -0.2492 44 1 14.8615 -6.3504 -1.6121 45 1 14.6818 -4.6585 -2.1497 46 1 8.1615 -1.7083 -2.1325 47 1 5.7422 -2.1668 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267936516.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:01 Heat of formation + Delta-G solvation = -109.397746 kcal Electronic energy + Delta-G solvation = -26853.363861 eV Core-core repulsion = 22807.592196 eV Total energy + Delta-G solvation = -4045.771665 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 13.91 seconds Orbital eigenvalues (eV) -41.14220 -40.59949 -40.10559 -37.99971 -37.04991 -35.80941 -33.89617 -32.59190 -32.18387 -31.87303 -30.08908 -29.34309 -27.85730 -25.67359 -23.88202 -23.65614 -23.64415 -22.32679 -21.78051 -21.70963 -19.87692 -18.61353 -18.43637 -17.57954 -17.14686 -16.99399 -16.81663 -16.65154 -16.44534 -16.33782 -15.98430 -15.72015 -15.42399 -15.11322 -14.92819 -14.76872 -14.36179 -14.12191 -14.05693 -13.89471 -13.57781 -13.43980 -13.26602 -13.16501 -13.13137 -12.86227 -12.72147 -12.39357 -12.20101 -11.93171 -11.92276 -11.78231 -11.72158 -11.04169 -11.02068 -10.96889 -10.49052 -10.18469 -9.84421 -9.68336 -9.34331 -8.05591 -5.39541 0.19354 0.48288 1.36606 1.38427 1.46137 1.53751 1.80309 2.45563 2.70335 2.93359 3.03407 3.26034 3.48354 3.61213 3.76434 3.85519 3.86941 3.88093 4.01010 4.02503 4.12681 4.19071 4.20741 4.24129 4.31222 4.37668 4.54348 4.55399 4.67782 4.68475 4.73318 4.80264 4.87939 4.88246 4.89238 5.04251 5.05227 5.18255 5.30011 5.42801 5.58228 5.72469 5.78051 5.81071 6.03134 6.06666 6.18130 6.51191 7.04031 7.18169 7.79183 7.98831 9.15621 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.036741 B = 0.001547 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.902486 B =18096.960926 C =18334.231226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.058 4.058 3 Si 0.952 3.048 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.256 1.256 7 C -0.238 4.238 8 H 0.060 0.940 9 N -0.753 5.753 10 C 0.188 3.812 11 C -0.091 4.091 12 C -0.115 4.115 13 C -0.097 4.097 14 C -0.107 4.107 15 C 0.171 3.829 16 N -0.709 5.709 17 C 0.509 3.491 18 O -0.576 6.576 19 C 0.042 3.958 20 O -0.383 6.383 21 C 0.052 3.948 22 H 0.114 0.886 23 C -0.154 4.154 24 C 0.044 3.956 25 O -0.406 6.406 26 C 0.019 3.981 27 C -0.097 4.097 28 C -0.115 4.115 29 H 0.259 0.741 30 H 0.365 0.635 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.125 0.875 34 H 0.143 0.857 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.418 0.582 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.069 0.931 41 H 0.111 0.889 42 H 0.086 0.914 43 H 0.103 0.897 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.143 0.857 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.919 -15.115 1.681 38.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.250 4.250 3 Si 0.780 3.220 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.181 1.181 7 C -0.369 4.369 8 H 0.078 0.922 9 N -0.399 5.399 10 C 0.063 3.937 11 C -0.092 4.092 12 C -0.133 4.133 13 C -0.115 4.115 14 C -0.108 4.108 15 C 0.048 3.952 16 N -0.363 5.363 17 C 0.296 3.704 18 O -0.455 6.455 19 C -0.037 4.037 20 O -0.301 6.301 21 C -0.006 4.006 22 H 0.131 0.869 23 C -0.192 4.192 24 C -0.032 4.032 25 O -0.326 6.326 26 C -0.058 4.058 27 C -0.116 4.116 28 C -0.133 4.133 29 H 0.068 0.932 30 H 0.198 0.802 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.143 0.857 34 H 0.161 0.839 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.255 0.745 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.088 0.912 41 H 0.130 0.870 42 H 0.104 0.896 43 H 0.121 0.879 44 H 0.107 0.893 45 H 0.097 0.903 46 H 0.160 0.840 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 35.336 -14.257 1.485 38.133 hybrid contribution -0.906 0.696 0.056 1.144 sum 34.430 -13.560 1.541 37.037 Atomic orbital electron populations 1.69869 1.07026 1.26747 1.59459 1.25446 0.96045 1.01051 1.02454 0.85452 0.78554 0.79896 0.78147 1.20409 1.22005 1.18084 1.19063 0.82482 0.93667 1.41641 0.92155 1.42708 1.02385 1.03762 1.91009 1.19731 0.86977 0.87747 0.99243 1.20154 0.94973 0.99651 0.94411 1.21221 0.94866 0.99619 0.97637 1.21210 0.93527 0.98363 0.98428 1.19779 0.94704 1.02873 0.93445 1.20045 0.86205 0.85995 1.02956 1.45849 1.05206 1.10293 1.74943 1.20875 0.82574 0.91430 0.75494 1.90738 1.69096 1.35243 1.50423 1.22465 0.81828 0.93770 1.05686 1.88089 1.15635 1.31277 1.95149 1.23834 0.92762 0.88272 0.95735 0.86862 1.23262 0.92632 1.02134 1.01127 1.23755 0.98003 1.00601 0.80861 1.88877 1.19420 1.94132 1.30181 1.23880 0.82117 1.02210 0.97593 1.21218 0.93561 0.98363 0.98427 1.21223 0.94857 0.99595 0.97646 0.93230 0.80188 0.94611 0.94699 0.85698 0.83924 0.90854 0.90942 0.74498 0.87232 0.86616 0.91223 0.87030 0.89627 0.87908 0.89337 0.90299 0.83972 0.85633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.70 13.97 21.65 0.30 -62.40 16 2 C -0.06 -3.43 5.50 84.86 0.47 -2.96 16 3 Si 0.95 45.80 27.74 68.60 1.90 47.70 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.26 -11.30 6.52 99.48 0.65 -10.65 16 7 C -0.24 -13.57 10.47 84.03 0.88 -12.69 16 8 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 9 N -0.75 -35.24 5.40 -347.19 -1.87 -37.11 16 10 C 0.19 7.03 6.38 85.63 0.55 7.57 16 11 C -0.09 -2.67 5.25 -19.87 -0.10 -2.78 16 12 C -0.11 -2.91 9.70 22.27 0.22 -2.69 16 13 C -0.10 -1.91 9.70 22.27 0.22 -1.69 16 14 C -0.11 -1.95 5.25 -19.87 -0.10 -2.06 16 15 C 0.17 2.85 5.80 85.63 0.50 3.34 16 16 N -0.71 -9.19 5.55 -466.79 -2.59 -11.78 16 17 C 0.51 8.97 7.91 87.66 0.69 9.66 16 18 O -0.58 -16.70 16.50 16.01 0.26 -16.44 16 19 C 0.04 0.41 6.28 71.24 0.45 0.85 16 20 O -0.38 -6.30 9.49 -129.94 -1.23 -7.53 16 21 C 0.05 0.50 3.51 31.58 0.11 0.61 16 22 H 0.11 0.32 7.86 -2.39 -0.02 0.30 16 23 C -0.15 -1.46 6.90 31.90 0.22 -1.24 16 24 C 0.04 0.40 7.72 72.67 0.56 0.96 16 25 O -0.41 -6.67 11.52 -148.98 -1.72 -8.39 16 26 C 0.02 0.22 7.52 72.35 0.54 0.76 16 27 C -0.10 -1.92 9.70 22.27 0.22 -1.71 16 28 C -0.11 -2.90 9.70 22.27 0.22 -2.68 16 29 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 30 H 0.37 16.63 5.52 -92.70 -0.51 16.12 16 31 H 0.04 1.34 8.09 -2.39 -0.02 1.32 16 32 H 0.04 1.31 8.08 -2.39 -0.02 1.29 16 33 H 0.13 3.12 8.06 -2.91 -0.02 3.10 16 34 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 35 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 36 H 0.07 1.32 8.08 -2.39 -0.02 1.30 16 37 H 0.42 3.05 8.46 -92.70 -0.78 2.26 16 38 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.12 0.37 8.10 -2.39 -0.02 0.35 16 40 H 0.07 1.00 8.09 -2.39 -0.02 0.98 16 41 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.08 1.09 7.97 -2.39 -0.02 1.07 16 46 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 47 H 0.13 3.13 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -81.38 395.84 0.30 -81.07 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -0.37 Total: 21.61 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 5.62 Total: -6.73 kcal Atomic # 7 Polarization: -107.13 SS G_CDS: -4.16 Total: -111.29 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -2.69 Total: -32.36 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.90 Total: 47.70 kcal Total: -81.38 0.30 -81.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267936516.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.325 kcal (2) G-P(sol) polarization free energy of solvation -81.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.91 seconds