Wall clock time and date at job start Tue Mar 31 2020 22:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 119.99747 * 2 1 4 4 H 1.48505 * 109.47119 * 239.99702 * 3 2 1 5 5 H 1.48499 * 109.47646 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47511 * 119.99834 * 3 2 1 7 7 C 1.37869 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00264 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00209 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47013 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.47192 * 176.41648 * 10 9 7 12 12 C 1.34277 * 119.37790 * 275.67355 * 11 10 9 13 13 O 1.21279 * 118.97140 * 2.23576 * 12 11 10 14 14 C 1.50282 * 122.05162 * 181.96063 * 12 11 10 15 15 O 1.42816 * 110.49719 * 341.60011 * 14 12 11 16 16 C 1.43377 * 113.34698 * 51.30327 * 15 14 12 17 17 C 1.45916 * 119.37918 * 95.64793 * 11 10 9 18 18 C 1.53509 * 113.75804 * 295.69629 * 17 11 10 19 19 N 1.47660 * 85.98060 * 91.24757 * 18 17 11 20 20 C 1.34773 * 134.45948 * 204.35257 * 19 18 17 21 21 O 1.21279 * 120.00167 * 179.97438 * 20 19 18 22 22 C 1.50697 * 119.99909 * 359.95268 * 20 19 18 23 23 C 1.54639 * 111.03908 * 295.33278 * 22 20 19 24 24 C 1.51160 * 104.69529 * 217.36254 * 23 22 20 25 25 C 1.30528 * 111.12125 * 16.38176 * 24 23 22 26 26 C 1.51104 * 111.10488 * 0.03120 * 25 24 23 27 27 C 1.47665 * 91.08062 * 24.31973 * 19 18 17 28 28 H 0.97002 * 120.00113 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47235 * 59.99953 * 9 7 2 30 30 H 1.09002 * 109.46676 * 299.99630 * 9 7 2 31 31 H 1.09002 * 109.47397 * 56.41611 * 10 9 7 32 32 H 1.09001 * 109.47349 * 296.41368 * 10 9 7 33 33 H 1.09004 * 109.26595 * 101.86038 * 14 12 11 34 34 H 1.08997 * 109.26524 * 221.33385 * 14 12 11 35 35 H 1.09006 * 109.70692 * 54.07199 * 16 15 14 36 36 H 1.09003 * 109.70957 * 174.64733 * 16 15 14 37 37 H 1.08997 * 113.79170 * 205.51683 * 18 17 11 38 38 H 1.09003 * 113.79114 * 336.98604 * 18 17 11 39 39 H 1.09002 * 110.91617 * 59.30156 * 22 20 19 40 40 H 1.09000 * 110.38637 * 336.14723 * 23 22 20 41 41 H 1.09002 * 110.38486 * 98.52101 * 23 22 20 42 42 H 1.07997 * 124.43573 * 196.42989 * 24 23 22 43 43 H 1.08005 * 124.44914 * 180.02562 * 25 24 23 44 44 H 1.08997 * 110.38712 * 224.75203 * 26 25 24 45 45 H 1.08998 * 110.38298 * 102.37409 * 26 25 24 46 46 H 1.09004 * 113.78786 * 221.40638 * 27 19 18 47 47 H 1.08998 * 113.79291 * 89.94469 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5149 -4.9291 0.0869 12 6 1.1416 -5.3936 1.2902 13 8 1.3832 -4.7306 2.2766 14 6 0.4286 -6.7065 1.4521 15 8 -0.1410 -7.1228 0.2104 16 6 0.7942 -7.1101 -0.8763 17 6 1.2062 -5.6622 -1.1364 18 6 0.2549 -4.9152 -2.0817 19 7 1.4745 -4.3638 -2.7052 20 6 1.7509 -3.2545 -3.4190 21 8 2.8794 -3.0539 -3.8153 22 6 0.6576 -2.2636 -3.7251 23 6 -0.4229 -2.8926 -4.6352 24 6 -0.8354 -1.7769 -5.5680 25 6 0.0398 -0.8085 -5.5590 26 6 1.1824 -1.1165 -4.6195 27 6 2.2701 -5.5145 -2.2326 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8904 31 1 2.9135 -3.5688 0.8567 32 1 2.8289 -3.6411 -0.9198 33 1 1.1373 -7.4610 1.7937 34 1 -0.3637 -6.5965 2.1925 35 1 1.6719 -7.7003 -0.6128 36 1 0.3263 -7.5257 -1.7688 37 1 -0.3168 -5.5708 -2.7385 38 1 -0.3614 -4.1665 -1.5840 39 1 0.2174 -1.8739 -2.8072 40 1 -0.0050 -3.7253 -5.2009 41 1 -1.2736 -3.2253 -4.0405 42 1 -1.7365 -1.7803 -6.1633 43 1 -0.0420 0.0944 -6.1461 44 1 1.4225 -0.2424 -4.0142 45 1 2.0580 -1.4429 -5.1807 46 1 3.2557 -5.2421 -1.8549 47 1 2.2973 -6.3482 -2.9342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269111795.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:13 Heat of formation + Delta-G solvation = -41.994355 kcal Electronic energy + Delta-G solvation = -31328.935445 eV Core-core repulsion = 27286.086610 eV Total energy + Delta-G solvation = -4042.848835 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 13.80 seconds Orbital eigenvalues (eV) -41.48187 -39.64095 -38.35007 -37.49230 -36.75118 -34.43711 -32.94028 -30.99567 -29.79986 -29.29726 -27.95039 -27.48901 -26.43317 -26.04562 -24.25336 -22.43195 -21.29239 -20.92999 -18.85930 -18.57203 -18.28947 -17.62467 -16.98940 -16.73779 -16.18012 -16.02344 -15.72365 -15.57683 -15.24757 -14.61309 -14.54524 -14.29714 -13.93699 -13.64916 -13.21803 -12.96740 -12.83303 -12.62604 -12.51907 -12.29999 -12.19542 -11.94863 -11.86350 -11.52719 -11.43451 -11.18110 -11.05469 -11.02503 -10.88895 -10.80097 -10.69449 -10.48491 -9.88625 -9.82927 -9.50232 -9.30491 -9.01724 -8.67815 -8.51714 -8.33036 -8.22097 -6.00380 -4.01759 2.43953 2.74154 2.90743 2.96289 3.08408 3.35442 3.38646 3.43138 3.52369 4.26502 4.33800 4.43755 4.49101 4.61624 4.75367 4.84846 4.97050 5.03206 5.18702 5.23712 5.23931 5.36029 5.43548 5.43993 5.48960 5.54452 5.63809 5.77109 5.82926 5.84947 5.98588 6.03556 6.07491 6.21465 6.34273 6.46116 6.55096 6.58980 6.69853 6.76049 6.85936 7.07109 7.53795 7.67809 7.85247 7.88455 7.98970 8.32485 8.43788 8.50270 9.02449 9.61626 11.10440 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009132 B = 0.006132 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.246566 B = 4564.879429 C = 6660.252303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.886 3.114 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.052 0.948 9 C 0.021 3.979 10 C 0.113 3.887 11 N -0.577 5.577 12 C 0.483 3.517 13 O -0.525 6.525 14 C 0.049 3.951 15 O -0.366 6.366 16 C 0.066 3.934 17 C 0.100 3.900 18 C 0.097 3.903 19 N -0.636 5.636 20 C 0.567 3.433 21 O -0.541 6.541 22 C -0.109 4.109 23 C -0.084 4.084 24 C -0.177 4.177 25 C -0.153 4.153 26 C -0.087 4.087 27 C 0.103 3.897 28 H 0.260 0.740 29 H 0.018 0.982 30 H 0.020 0.980 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.129 0.871 35 H 0.069 0.931 36 H 0.119 0.881 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.125 0.875 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.658 -15.416 -8.433 17.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.137 4.137 3 Si 0.714 3.286 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.070 0.930 9 C -0.017 4.017 10 C -0.007 4.007 11 N -0.309 5.309 12 C 0.269 3.731 13 O -0.401 6.401 14 C -0.030 4.030 15 O -0.284 6.284 16 C -0.012 4.012 17 C 0.011 3.989 18 C -0.027 4.027 19 N -0.372 5.372 20 C 0.358 3.642 21 O -0.418 6.418 22 C -0.130 4.130 23 C -0.121 4.121 24 C -0.195 4.195 25 C -0.171 4.171 26 C -0.124 4.124 27 C -0.020 4.020 28 H 0.070 0.930 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.147 0.853 35 H 0.087 0.913 36 H 0.137 0.863 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.143 0.857 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.098 0.902 45 H 0.106 0.894 46 H 0.108 0.892 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.199 -14.678 -8.235 16.974 hybrid contribution 0.618 1.214 0.011 1.362 sum -1.582 -13.465 -8.224 15.857 Atomic orbital electron populations 1.69941 1.05848 1.26624 1.50662 1.24884 0.94781 0.98882 0.95170 0.86737 0.79747 0.83321 0.78777 1.20115 1.21250 1.20256 1.20989 0.92852 0.90667 1.50910 0.92994 1.19360 0.94150 0.90752 0.97411 1.22016 0.95845 0.81507 1.01305 1.47547 1.56136 1.23524 1.03686 1.20963 0.80217 0.88447 0.83429 1.90787 1.54842 1.57635 1.36878 1.22816 0.99791 0.92697 0.87735 1.88150 1.36010 1.87324 1.16906 1.22895 0.94107 0.92531 0.91670 1.22278 0.96882 0.93064 0.86638 1.23736 0.89909 0.96812 0.92220 1.49740 1.12153 1.20345 1.54977 1.19942 0.89441 0.79871 0.74947 1.90653 1.23142 1.75475 1.52535 1.22158 0.94634 0.94850 1.01376 1.21268 0.97546 0.97303 0.95993 1.23130 0.99449 0.96186 1.00735 1.23337 0.96147 0.98489 0.99097 1.21257 0.97387 0.97849 0.95929 1.23388 0.97407 0.88563 0.92687 0.93008 0.96398 0.96139 0.91312 0.91168 0.89706 0.85319 0.91302 0.86341 0.88802 0.88310 0.85704 0.91154 0.90699 0.85947 0.85891 0.90174 0.89387 0.89181 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 2 C 0.06 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.53 5.12 -27.88 -0.14 0.39 16 10 C 0.11 2.40 4.40 -4.04 -0.02 2.39 16 11 N -0.58 -9.70 2.67 -162.65 -0.43 -10.13 16 12 C 0.48 8.28 7.59 -11.41 -0.09 8.19 16 13 O -0.53 -11.51 16.45 5.56 0.09 -11.42 16 14 C 0.05 0.58 6.94 35.80 0.25 0.83 16 15 O -0.37 -4.02 10.84 -35.23 -0.38 -4.40 16 16 C 0.07 0.56 6.09 37.04 0.23 0.79 16 17 C 0.10 1.23 1.56 -135.77 -0.21 1.02 16 18 C 0.10 1.23 6.97 -3.15 -0.02 1.21 16 19 N -0.64 -9.55 2.26 -180.47 -0.41 -9.95 16 20 C 0.57 10.36 6.78 -10.99 -0.07 10.29 16 21 O -0.54 -11.58 16.26 5.56 0.09 -11.49 16 22 C -0.11 -1.91 3.31 -90.05 -0.30 -2.20 16 23 C -0.08 -1.14 6.05 -26.80 -0.16 -1.30 16 24 C -0.18 -2.32 10.78 -35.67 -0.38 -2.71 16 25 C -0.15 -2.18 10.78 -35.70 -0.38 -2.57 16 26 C -0.09 -1.50 6.16 -26.82 -0.17 -1.66 16 27 C 0.10 1.24 7.39 -3.17 -0.02 1.22 16 28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.02 0.45 4.79 -51.93 -0.25 0.20 16 30 H 0.02 0.59 8.01 -51.93 -0.42 0.18 16 31 H 0.07 1.59 7.54 -51.93 -0.39 1.20 16 32 H 0.07 1.48 5.14 -51.93 -0.27 1.21 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.13 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.07 0.48 8.13 -51.93 -0.42 0.05 16 36 H 0.12 0.65 7.86 -51.93 -0.41 0.25 16 37 H 0.09 0.83 7.90 -51.93 -0.41 0.42 16 38 H 0.10 1.55 6.89 -51.93 -0.36 1.19 16 39 H 0.13 2.59 6.92 -51.93 -0.36 2.23 16 40 H 0.07 0.89 7.88 -51.93 -0.41 0.48 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 44 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 45 H 0.09 1.56 7.01 -51.93 -0.36 1.19 16 46 H 0.09 1.23 7.01 -51.93 -0.36 0.87 16 47 H 0.10 0.79 8.09 -51.93 -0.42 0.37 16 LS Contribution 375.01 15.07 5.65 5.65 Total: -1.00 -35.60 375.01 -8.50 -44.10 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.92 Total: 3.28 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -1.91 Total: 2.67 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: -0.11 Total: -45.49 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.20 Total: -27.31 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.60 -8.50 -44.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269111795.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.105 kcal (2) G-P(sol) polarization free energy of solvation -35.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.80 seconds