Wall clock time and date at job start Tue Mar 31 2020 22:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 119.99747 * 2 1 4 4 H 1.48505 * 109.47119 * 239.99702 * 3 2 1 5 5 H 1.48499 * 109.47646 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47511 * 119.99834 * 3 2 1 7 7 C 1.37869 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00264 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00209 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47013 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.47192 * 176.41648 * 10 9 7 12 12 C 1.34277 * 119.37790 * 275.67355 * 11 10 9 13 13 O 1.21279 * 118.97140 * 2.23576 * 12 11 10 14 14 C 1.50282 * 122.05162 * 181.96063 * 12 11 10 15 15 O 1.42816 * 110.49719 * 341.60011 * 14 12 11 16 16 C 1.43377 * 113.34698 * 51.30327 * 15 14 12 17 17 C 1.45916 * 119.37918 * 95.64793 * 11 10 9 18 18 C 1.53509 * 113.75804 * 295.69629 * 17 11 10 19 19 N 1.47660 * 85.98060 * 91.24757 * 18 17 11 20 20 C 1.34773 * 134.45948 * 204.35257 * 19 18 17 21 21 O 1.21279 * 120.00167 * 179.97438 * 20 19 18 22 22 C 1.50697 * 119.99909 * 359.95268 * 20 19 18 23 23 C 1.54639 * 111.03908 * 295.33278 * 22 20 19 24 24 C 1.51160 * 104.69529 * 217.36254 * 23 22 20 25 25 C 1.30528 * 111.12125 * 16.38176 * 24 23 22 26 26 C 1.51104 * 111.10488 * 0.03120 * 25 24 23 27 27 C 1.47665 * 91.08062 * 24.31973 * 19 18 17 28 28 H 0.97002 * 120.00113 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47235 * 59.99953 * 9 7 2 30 30 H 1.09002 * 109.46676 * 299.99630 * 9 7 2 31 31 H 1.09002 * 109.47397 * 56.41611 * 10 9 7 32 32 H 1.09001 * 109.47349 * 296.41368 * 10 9 7 33 33 H 1.09004 * 109.26595 * 101.86038 * 14 12 11 34 34 H 1.08997 * 109.26524 * 221.33385 * 14 12 11 35 35 H 1.09006 * 109.70692 * 54.07199 * 16 15 14 36 36 H 1.09003 * 109.70957 * 174.64733 * 16 15 14 37 37 H 1.08997 * 113.79170 * 205.51683 * 18 17 11 38 38 H 1.09003 * 113.79114 * 336.98604 * 18 17 11 39 39 H 1.09002 * 110.91617 * 59.30156 * 22 20 19 40 40 H 1.09000 * 110.38637 * 336.14723 * 23 22 20 41 41 H 1.09002 * 110.38486 * 98.52101 * 23 22 20 42 42 H 1.07997 * 124.43573 * 196.42989 * 24 23 22 43 43 H 1.08005 * 124.44914 * 180.02562 * 25 24 23 44 44 H 1.08997 * 110.38712 * 224.75203 * 26 25 24 45 45 H 1.08998 * 110.38298 * 102.37409 * 26 25 24 46 46 H 1.09004 * 113.78786 * 221.40638 * 27 19 18 47 47 H 1.08998 * 113.79291 * 89.94469 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5149 -4.9291 0.0869 12 6 1.1416 -5.3936 1.2902 13 8 1.3832 -4.7306 2.2766 14 6 0.4286 -6.7065 1.4521 15 8 -0.1410 -7.1228 0.2104 16 6 0.7942 -7.1101 -0.8763 17 6 1.2062 -5.6622 -1.1364 18 6 0.2549 -4.9152 -2.0817 19 7 1.4745 -4.3638 -2.7052 20 6 1.7509 -3.2545 -3.4190 21 8 2.8794 -3.0539 -3.8153 22 6 0.6576 -2.2636 -3.7251 23 6 -0.4229 -2.8926 -4.6352 24 6 -0.8354 -1.7769 -5.5680 25 6 0.0398 -0.8085 -5.5590 26 6 1.1824 -1.1165 -4.6195 27 6 2.2701 -5.5145 -2.2326 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8904 31 1 2.9135 -3.5688 0.8567 32 1 2.8289 -3.6411 -0.9198 33 1 1.1373 -7.4610 1.7937 34 1 -0.3637 -6.5965 2.1925 35 1 1.6719 -7.7003 -0.6128 36 1 0.3263 -7.5257 -1.7688 37 1 -0.3168 -5.5708 -2.7385 38 1 -0.3614 -4.1665 -1.5840 39 1 0.2174 -1.8739 -2.8072 40 1 -0.0050 -3.7253 -5.2009 41 1 -1.2736 -3.2253 -4.0405 42 1 -1.7365 -1.7803 -6.1633 43 1 -0.0420 0.0944 -6.1461 44 1 1.4225 -0.2424 -4.0142 45 1 2.0580 -1.4429 -5.1807 46 1 3.2557 -5.2421 -1.8549 47 1 2.2973 -6.3482 -2.9342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269111795.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:51 Heat of formation + Delta-G solvation = -67.161663 kcal Electronic energy + Delta-G solvation = -31330.026782 eV Core-core repulsion = 27286.086610 eV Total energy + Delta-G solvation = -4043.940171 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 22.93 seconds Orbital eigenvalues (eV) -42.65957 -40.94734 -39.63128 -38.54480 -38.05180 -36.15468 -34.88371 -32.47526 -31.38674 -30.39856 -29.17615 -28.81856 -27.50458 -27.26369 -25.95491 -23.68641 -23.05014 -22.28732 -20.08727 -19.73631 -19.47774 -18.88692 -18.51437 -18.22096 -17.51713 -17.35682 -16.95705 -16.85743 -16.60777 -16.32584 -15.79725 -15.56271 -15.21993 -14.93875 -14.62498 -14.39756 -14.20562 -14.15478 -13.84524 -13.74908 -13.46975 -13.36215 -13.08800 -13.01509 -12.85618 -12.77740 -12.62394 -12.53585 -12.21469 -12.14123 -12.08331 -11.89614 -11.80963 -11.46971 -11.36406 -10.88788 -10.60095 -10.37367 -9.83361 -9.80932 -9.64714 -8.26657 -6.35872 1.28956 1.31385 1.34897 1.38149 1.42334 1.61829 1.73516 1.81344 2.33572 2.67457 3.06573 3.22022 3.30460 3.36613 3.55475 3.63624 3.71840 3.83941 4.11195 4.20400 4.25222 4.32349 4.39057 4.46056 4.48177 4.52245 4.56256 4.60770 4.69352 4.71563 4.77549 4.80018 4.81732 4.83309 4.89224 4.97921 5.03618 5.15241 5.19327 5.41113 5.55671 5.56537 5.75248 5.82962 5.99909 6.14490 6.41260 6.60607 6.74258 7.04090 7.13377 7.31264 8.83763 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009132 B = 0.006132 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.246566 B = 4564.879429 C = 6660.252303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.020 3.980 3 Si 0.945 3.055 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.542 4.542 8 H 0.042 0.958 9 C 0.041 3.959 10 C 0.135 3.865 11 N -0.580 5.580 12 C 0.472 3.528 13 O -0.587 6.587 14 C 0.065 3.935 15 O -0.367 6.367 16 C 0.071 3.929 17 C 0.094 3.906 18 C 0.099 3.901 19 N -0.642 5.642 20 C 0.559 3.441 21 O -0.586 6.586 22 C -0.113 4.113 23 C -0.076 4.076 24 C -0.159 4.159 25 C -0.174 4.174 26 C -0.090 4.090 27 C 0.106 3.894 28 H 0.264 0.736 29 H 0.016 0.984 30 H -0.027 1.027 31 H 0.040 0.960 32 H 0.070 0.930 33 H 0.122 0.878 34 H 0.136 0.864 35 H 0.097 0.903 36 H 0.167 0.833 37 H 0.152 0.848 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.159 0.841 43 H 0.143 0.857 44 H 0.045 0.955 45 H 0.077 0.923 46 H 0.067 0.933 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.063 -18.719 -10.431 21.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.180 4.180 3 Si 0.770 3.230 4 H -0.197 1.197 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.060 0.940 9 C 0.004 3.996 10 C 0.013 3.987 11 N -0.311 5.311 12 C 0.261 3.739 13 O -0.468 6.468 14 C -0.014 4.014 15 O -0.285 6.285 16 C -0.006 4.006 17 C 0.007 3.993 18 C -0.024 4.024 19 N -0.377 5.377 20 C 0.350 3.650 21 O -0.467 6.467 22 C -0.134 4.134 23 C -0.113 4.113 24 C -0.176 4.176 25 C -0.192 4.192 26 C -0.127 4.127 27 C -0.016 4.016 28 H 0.073 0.927 29 H 0.034 0.966 30 H -0.009 1.009 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.140 0.860 34 H 0.154 0.846 35 H 0.115 0.885 36 H 0.184 0.816 37 H 0.169 0.831 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.177 0.823 43 H 0.161 0.839 44 H 0.063 0.937 45 H 0.095 0.905 46 H 0.086 0.914 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.643 -18.051 -10.237 21.069 hybrid contribution 1.041 2.213 0.673 2.537 sum -2.602 -15.837 -9.564 18.683 Atomic orbital electron populations 1.70039 1.07042 1.27582 1.50812 1.25643 0.95685 1.02163 0.94505 0.85803 0.78810 0.79515 0.78839 1.19728 1.19809 1.19771 1.21322 0.92653 0.92547 1.51536 0.94018 1.19065 0.93996 0.91802 0.94778 1.21346 0.94608 0.82925 0.99861 1.47564 1.55434 1.22112 1.06021 1.22229 0.79309 0.89985 0.82345 1.90753 1.57238 1.59848 1.38917 1.22767 1.00154 0.89732 0.88738 1.88170 1.36827 1.86567 1.16917 1.23284 0.95450 0.89186 0.92697 1.22724 0.96895 0.95161 0.84568 1.24039 0.89159 0.96368 0.92856 1.49882 1.14207 1.20264 1.53297 1.20049 0.88861 0.80845 0.75270 1.90614 1.24514 1.76730 1.54802 1.22047 0.95825 0.95312 1.00219 1.21289 0.96576 0.97858 0.95575 1.23473 0.99703 0.94859 0.99578 1.23361 0.95605 1.00384 0.99823 1.21206 0.98718 0.96599 0.96219 1.23721 0.95819 0.88701 0.93353 0.92728 0.96589 1.00861 0.94167 0.91153 0.86004 0.84602 0.88455 0.81599 0.83089 0.92108 0.90111 0.89214 0.89113 0.82333 0.83907 0.93662 0.90462 0.91441 0.83024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.22 13.29 21.45 0.28 -55.93 16 2 C 0.02 1.17 5.46 84.65 0.46 1.63 16 3 Si 0.95 47.19 29.54 68.60 2.03 49.22 16 4 H -0.27 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.27 -13.36 7.11 99.48 0.71 -12.65 16 7 C -0.54 -32.92 9.11 25.60 0.23 -32.68 16 8 H 0.04 2.55 7.74 -2.91 -0.02 2.52 16 9 C 0.04 2.28 5.12 29.85 0.15 2.43 16 10 C 0.14 6.13 4.40 86.38 0.38 6.51 16 11 N -0.58 -19.76 2.67 -787.17 -2.10 -21.86 16 12 C 0.47 16.30 7.59 87.60 0.66 16.96 16 13 O -0.59 -27.17 16.45 -3.03 -0.05 -27.22 16 14 C 0.07 1.36 6.94 71.10 0.49 1.86 16 15 O -0.37 -6.33 10.84 -148.98 -1.61 -7.94 16 16 C 0.07 0.80 6.09 71.90 0.44 1.23 16 17 C 0.09 2.05 1.56 5.37 0.01 2.05 16 18 C 0.10 2.26 6.97 86.32 0.60 2.86 16 19 N -0.64 -18.75 2.26 -843.27 -1.91 -20.66 16 20 C 0.56 21.06 6.78 87.66 0.59 21.65 16 21 O -0.59 -26.26 16.26 -3.03 -0.05 -26.31 16 22 C -0.11 -4.11 3.31 -10.43 -0.03 -4.15 16 23 C -0.08 -1.93 6.05 30.55 0.18 -1.75 16 24 C -0.16 -3.80 10.78 26.28 0.28 -3.52 16 25 C -0.17 -4.92 10.78 26.26 0.28 -4.63 16 26 C -0.09 -3.31 6.16 30.53 0.19 -3.12 16 27 C 0.11 2.27 7.39 86.31 0.64 2.90 16 28 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 29 H 0.02 0.88 4.79 -2.39 -0.01 0.87 16 30 H -0.03 -1.73 8.01 -2.39 -0.02 -1.75 16 31 H 0.04 2.02 7.54 -2.39 -0.02 2.00 16 32 H 0.07 3.17 5.14 -2.39 -0.01 3.16 16 33 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.14 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.10 0.68 8.13 -2.38 -0.02 0.66 16 36 H 0.17 0.43 7.86 -2.39 -0.02 0.41 16 37 H 0.15 1.80 7.90 -2.39 -0.02 1.78 16 38 H 0.06 1.91 6.89 -2.39 -0.02 1.89 16 39 H 0.08 3.65 6.92 -2.39 -0.02 3.64 16 40 H 0.09 1.99 7.88 -2.39 -0.02 1.97 16 41 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 43 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 44 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.08 2.94 7.01 -2.39 -0.02 2.92 16 46 H 0.07 1.80 7.01 -2.39 -0.02 1.78 16 47 H 0.15 1.63 8.09 -2.39 -0.02 1.61 16 Total: -1.00 -88.83 375.01 3.14 -85.69 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.98 Total: 14.76 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 5.57 Total: 10.26 kcal Atomic # 7 Polarization: -94.73 SS G_CDS: -3.72 Total: -98.45 kcal Atomic # 8 Polarization: -59.76 SS G_CDS: -1.71 Total: -61.47 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -88.83 3.14 -85.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269111795.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.528 kcal (2) G-P(sol) polarization free energy of solvation -88.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 22.93 seconds