Wall clock time and date at job start Tue Mar 31 2020 22:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86792 * 120.00344 * 2 1 4 4 H 1.48505 * 109.47065 * 273.88022 * 3 2 1 5 5 H 1.48498 * 109.46999 * 33.87720 * 3 2 1 6 6 H 1.48495 * 109.47482 * 153.87676 * 3 2 1 7 7 C 1.38813 * 119.99323 * 180.27684 * 2 1 3 8 8 H 1.07995 * 120.00486 * 353.56411 * 7 2 1 9 9 N 1.36936 * 119.99588 * 173.56775 * 7 2 1 10 10 C 1.46505 * 120.00117 * 184.89349 * 9 7 2 11 11 C 1.52994 * 109.47414 * 174.46037 * 10 9 7 12 12 N 1.46502 * 110.01648 * 61.72930 * 11 10 9 13 13 C 1.34781 * 119.99761 * 64.90704 * 12 11 10 14 14 O 1.21282 * 119.99593 * 4.41826 * 13 12 11 15 15 C 1.50698 * 119.99701 * 184.42281 * 13 12 11 16 16 C 1.52998 * 109.47211 * 91.39252 * 15 13 12 17 17 C 1.52992 * 115.55244 * 41.98355 * 16 15 13 18 18 F 1.39900 * 109.47367 * 50.41594 * 17 16 15 19 19 F 1.39895 * 109.47417 * 170.41877 * 17 16 15 20 20 F 1.39901 * 109.46935 * 290.41688 * 17 16 15 21 21 C 1.53004 * 117.49659 * 256.27514 * 16 15 13 22 22 C 1.53005 * 117.49624 * 187.65261 * 16 15 13 23 23 C 1.54270 * 110.03131 * 300.29154 * 11 10 9 24 24 C 1.54893 * 104.19691 * 217.10256 * 23 11 10 25 25 C 1.54894 * 102.74589 * 37.94157 * 24 23 11 26 26 C 1.53872 * 110.03312 * 183.12434 * 11 10 9 27 27 H 0.97005 * 119.99761 * 359.72556 * 1 2 3 28 28 H 0.96998 * 120.00487 * 4.90010 * 9 7 2 29 29 H 1.09001 * 109.46919 * 294.46324 * 10 9 7 30 30 H 1.08997 * 109.46621 * 54.45815 * 10 9 7 31 31 H 0.97001 * 120.00284 * 244.89880 * 12 11 10 32 32 H 1.09008 * 109.46308 * 211.38896 * 15 13 12 33 33 H 1.08995 * 109.47232 * 331.38251 * 15 13 12 34 34 H 1.09005 * 117.49867 * 359.97438 * 21 16 15 35 35 H 1.08992 * 117.49976 * 145.02465 * 21 16 15 36 36 H 1.08996 * 117.49800 * 214.97428 * 22 16 15 37 37 H 1.09001 * 117.49941 * 0.02562 * 22 16 15 38 38 H 1.08993 * 110.48816 * 335.78286 * 23 11 10 39 39 H 1.08999 * 110.48649 * 98.42695 * 23 11 10 40 40 H 1.08997 * 110.75839 * 279.63302 * 24 23 11 41 41 H 1.08999 * 110.75618 * 156.25612 * 24 23 11 42 42 H 1.09002 * 110.48939 * 203.37936 * 25 24 23 43 43 H 1.09005 * 110.48766 * 80.73330 * 25 24 23 44 44 H 1.09003 * 110.03042 * 238.56857 * 26 11 10 45 45 H 1.08998 * 110.03445 * 359.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4157 2.0937 -1.3969 5 1 1.4912 2.6275 0.7804 6 1 3.5864 1.4178 0.6164 7 6 2.0101 -1.2022 -0.0058 8 1 1.4752 -2.1350 0.0945 9 7 3.3730 -1.2054 -0.1387 10 6 4.0950 -2.4751 -0.2526 11 6 5.5743 -2.1978 -0.5272 12 7 6.1595 -1.4488 0.5876 13 6 6.2496 -2.0160 1.8069 14 8 5.9208 -3.1729 1.9633 15 6 6.7589 -1.2127 2.9758 16 6 5.5806 -0.5460 3.6885 17 6 4.3374 -1.4196 3.8671 18 9 4.7063 -2.6466 4.4289 19 9 3.4306 -0.7729 4.7136 20 9 3.7384 -1.6382 2.6218 21 6 5.3651 0.9498 3.4495 22 6 5.9022 0.4598 4.7958 23 6 5.7279 -1.4007 -1.8391 24 6 7.0141 -1.9745 -2.4839 25 6 6.9178 -3.4846 -2.1530 26 6 6.3308 -3.5228 -0.7268 27 1 -0.4850 0.8401 0.0040 28 1 3.8605 -0.3670 -0.1573 29 1 3.9967 -3.0337 0.6781 30 1 3.6764 -3.0586 -1.0726 31 1 6.4821 -0.5447 0.4483 32 1 7.2781 -1.8724 3.6712 33 1 7.4476 -0.4473 2.6182 34 1 6.0631 1.4589 2.7847 35 1 4.3375 1.3117 3.4192 36 1 5.2278 0.4994 5.6511 37 1 6.9532 0.6468 5.0161 38 1 4.8688 -1.5664 -2.4890 39 1 5.8485 -0.3381 -1.6279 40 1 7.9026 -1.5356 -2.0301 41 1 7.0102 -1.8143 -3.5620 42 1 7.9066 -3.9430 -2.1709 43 1 6.2506 -3.9869 -2.8535 44 1 7.1338 -3.6082 0.0053 45 1 5.6441 -4.3634 -0.6276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269553999.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:57 Heat of formation + Delta-G solvation = -150.685707 kcal Electronic energy + Delta-G solvation = -32623.094874 eV Core-core repulsion = 28033.676088 eV Total energy + Delta-G solvation = -4589.418786 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.54467 -47.16580 -46.84736 -40.27767 -38.34583 -37.15400 -34.38716 -33.24979 -31.27552 -29.97978 -28.66229 -27.96332 -26.22091 -24.50883 -22.79777 -21.88305 -21.40336 -20.62015 -20.16690 -19.11064 -17.99541 -17.72827 -17.64118 -17.52030 -16.14278 -16.02787 -15.27030 -15.01686 -14.68254 -14.37212 -14.17987 -13.91773 -13.81193 -13.61446 -13.51830 -13.44447 -13.18198 -13.08146 -13.02071 -12.84697 -12.81282 -12.60547 -11.93217 -11.86793 -11.78198 -11.43252 -11.27786 -11.03818 -10.97651 -10.88648 -10.81546 -10.66727 -10.54697 -10.51560 -10.40148 -10.10456 -9.52888 -9.41987 -8.75176 -8.64277 -7.06679 -5.66416 -2.98083 2.72916 3.01585 3.16968 3.34942 3.37444 3.42052 3.45678 4.07378 4.13796 4.40247 4.42138 4.59740 4.65608 4.78017 4.83224 4.94966 5.00713 5.15510 5.16959 5.32777 5.36508 5.44058 5.52247 5.55855 5.63885 5.64993 5.67062 5.73275 5.82313 5.84743 5.89609 5.93152 6.04522 6.19096 6.34906 6.43840 6.47508 6.55371 6.89099 7.08416 7.74807 8.12925 8.47013 8.52748 9.33273 10.05388 10.27333 11.52936 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.008790 B = 0.007876 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3184.557268 B = 3554.043522 C = 5421.081550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.000 4.000 3 Si 0.877 3.123 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.222 4.222 8 H 0.086 0.914 9 N -0.744 5.744 10 C 0.152 3.848 11 C 0.165 3.835 12 N -0.709 5.709 13 C 0.514 3.486 14 O -0.522 6.522 15 C -0.097 4.097 16 C -0.193 4.193 17 C 0.478 3.522 18 F -0.178 7.178 19 F -0.188 7.188 20 F -0.136 7.136 21 C -0.141 4.141 22 C -0.144 4.144 23 C -0.120 4.120 24 C -0.124 4.124 25 C -0.125 4.125 26 C -0.114 4.114 27 H 0.256 0.744 28 H 0.356 0.644 29 H 0.043 0.957 30 H 0.034 0.966 31 H 0.393 0.607 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.692 0.725 3.988 20.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.194 4.194 3 Si 0.709 3.291 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.352 4.352 8 H 0.104 0.896 9 N -0.389 5.389 10 C 0.024 3.976 11 C 0.080 3.920 12 N -0.360 5.360 13 C 0.299 3.701 14 O -0.397 6.397 15 C -0.137 4.137 16 C -0.194 4.194 17 C 0.423 3.577 18 F -0.160 7.160 19 F -0.170 7.170 20 F -0.117 7.117 21 C -0.178 4.178 22 C -0.181 4.181 23 C -0.158 4.158 24 C -0.162 4.162 25 C -0.163 4.163 26 C -0.153 4.153 27 H 0.066 0.934 28 H 0.189 0.811 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.227 0.773 32 H 0.126 0.874 33 H 0.114 0.886 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 19.159 -0.245 4.109 19.596 hybrid contribution 0.371 1.650 0.089 1.693 sum 19.529 1.405 4.198 20.025 Atomic orbital electron populations 1.69717 1.05041 1.25337 1.58552 1.24601 0.95084 0.96817 1.02924 0.86598 0.79318 0.85726 0.77488 1.21519 1.22079 1.20329 1.19009 0.81135 0.94591 1.40483 0.89582 1.42496 1.04530 1.01900 1.89984 1.21085 0.87209 0.89678 0.99593 1.21330 0.94204 0.91357 0.85139 1.46111 1.62697 1.17967 1.09247 1.20203 0.78389 0.87711 0.83780 1.90743 1.47944 1.16910 1.84100 1.21252 0.95617 1.00585 0.96270 1.22231 0.95637 0.92839 1.08741 1.19365 0.83995 0.78810 0.75501 1.93179 1.91483 1.45762 1.85537 1.93135 1.70117 1.81534 1.72193 1.93495 1.84266 1.94628 1.39285 1.23247 1.04453 0.91125 0.99006 1.23206 1.03445 0.98559 0.92900 1.22620 0.98674 0.98911 0.95634 1.22516 0.97627 0.95818 1.00191 1.22401 1.00439 0.96343 0.97099 1.22370 0.99825 0.97003 0.96079 0.93388 0.81148 0.93878 0.94783 0.77337 0.87431 0.88583 0.86997 0.87128 0.87156 0.86985 0.89182 0.91553 0.91945 0.91629 0.92085 0.91507 0.91244 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.94 13.97 55.49 0.78 -29.16 16 2 C 0.00 0.01 5.50 -17.43 -0.10 -0.08 16 3 Si 0.88 21.77 27.75 -169.99 -4.72 17.05 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.28 -6.17 6.52 56.52 0.37 -5.80 16 7 C -0.22 -6.32 10.46 -15.06 -0.16 -6.48 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 9 N -0.74 -17.30 4.16 -59.91 -0.25 -17.55 16 10 C 0.15 3.10 4.33 -4.04 -0.02 3.08 16 11 C 0.17 2.54 0.57 -130.70 -0.07 2.47 16 12 N -0.71 -9.86 4.81 -46.57 -0.22 -10.08 16 13 C 0.51 7.71 4.42 -10.98 -0.05 7.66 16 14 O -0.52 -9.72 12.80 5.56 0.07 -9.65 16 15 C -0.10 -1.09 5.50 -27.88 -0.15 -1.25 16 16 C -0.19 -2.51 2.00 -154.51 -0.31 -2.82 16 17 C 0.48 8.48 2.61 37.15 0.10 8.58 16 18 F -0.18 -3.25 16.25 2.25 0.04 -3.21 16 19 F -0.19 -3.39 15.93 2.25 0.04 -3.35 16 20 F -0.14 -2.98 13.06 2.25 0.03 -2.95 16 21 C -0.14 -1.64 9.66 -26.72 -0.26 -1.90 16 22 C -0.14 -1.39 9.66 -26.72 -0.26 -1.64 16 23 C -0.12 -1.63 5.41 -25.07 -0.14 -1.77 16 24 C -0.12 -1.34 6.91 -24.73 -0.17 -1.51 16 25 C -0.13 -1.43 6.83 -25.07 -0.17 -1.60 16 26 C -0.11 -1.61 5.13 -25.61 -0.13 -1.74 16 27 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 28 H 0.36 7.93 5.09 -40.82 -0.21 7.72 16 29 H 0.04 1.00 5.74 -51.93 -0.30 0.70 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.39 4.46 8.22 -40.82 -0.34 4.13 16 32 H 0.11 1.13 8.14 -51.92 -0.42 0.71 16 33 H 0.10 0.73 7.96 -51.93 -0.41 0.32 16 34 H 0.11 1.02 8.10 -51.93 -0.42 0.60 16 35 H 0.11 1.54 8.06 -51.93 -0.42 1.12 16 36 H 0.11 1.09 7.51 -51.93 -0.39 0.70 16 37 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.09 1.37 7.85 -51.93 -0.41 0.97 16 39 H 0.07 0.85 7.70 -51.93 -0.40 0.45 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 1.01 6.79 -51.93 -0.35 0.66 16 45 H 0.07 1.14 7.67 -51.93 -0.40 0.74 16 LS Contribution 362.53 15.07 5.46 5.46 Total: -1.00 -34.67 362.53 -7.26 -41.93 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -6.59 Total: 10.51 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -1.89 Total: 1.00 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.30 Total: -56.79 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.07 Total: -9.65 kcal Atomic # 9 Polarization: -9.62 SS G_CDS: 0.10 Total: -9.52 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.72 Total: 17.05 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.67 -7.26 -41.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269553999.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.761 kcal (2) G-P(sol) polarization free energy of solvation -34.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds