Wall clock time and date at job start Tue Mar 31 2020 22:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86792 * 120.00344 * 2 1 4 4 H 1.48505 * 109.47065 * 273.88022 * 3 2 1 5 5 H 1.48498 * 109.46999 * 33.87720 * 3 2 1 6 6 H 1.48495 * 109.47482 * 153.87676 * 3 2 1 7 7 C 1.38813 * 119.99323 * 180.27684 * 2 1 3 8 8 H 1.07995 * 120.00486 * 353.56411 * 7 2 1 9 9 N 1.36936 * 119.99588 * 173.56775 * 7 2 1 10 10 C 1.46505 * 120.00117 * 184.89349 * 9 7 2 11 11 C 1.52994 * 109.47414 * 174.46037 * 10 9 7 12 12 N 1.46502 * 110.01648 * 61.72930 * 11 10 9 13 13 C 1.34781 * 119.99761 * 64.90704 * 12 11 10 14 14 O 1.21282 * 119.99593 * 4.41826 * 13 12 11 15 15 C 1.50698 * 119.99701 * 184.42281 * 13 12 11 16 16 C 1.52998 * 109.47211 * 91.39252 * 15 13 12 17 17 C 1.52992 * 115.55244 * 41.98355 * 16 15 13 18 18 F 1.39900 * 109.47367 * 50.41594 * 17 16 15 19 19 F 1.39895 * 109.47417 * 170.41877 * 17 16 15 20 20 F 1.39901 * 109.46935 * 290.41688 * 17 16 15 21 21 C 1.53004 * 117.49659 * 256.27514 * 16 15 13 22 22 C 1.53005 * 117.49624 * 187.65261 * 16 15 13 23 23 C 1.54270 * 110.03131 * 300.29154 * 11 10 9 24 24 C 1.54893 * 104.19691 * 217.10256 * 23 11 10 25 25 C 1.54894 * 102.74589 * 37.94157 * 24 23 11 26 26 C 1.53872 * 110.03312 * 183.12434 * 11 10 9 27 27 H 0.97005 * 119.99761 * 359.72556 * 1 2 3 28 28 H 0.96998 * 120.00487 * 4.90010 * 9 7 2 29 29 H 1.09001 * 109.46919 * 294.46324 * 10 9 7 30 30 H 1.08997 * 109.46621 * 54.45815 * 10 9 7 31 31 H 0.97001 * 120.00284 * 244.89880 * 12 11 10 32 32 H 1.09008 * 109.46308 * 211.38896 * 15 13 12 33 33 H 1.08995 * 109.47232 * 331.38251 * 15 13 12 34 34 H 1.09005 * 117.49867 * 359.97438 * 21 16 15 35 35 H 1.08992 * 117.49976 * 145.02465 * 21 16 15 36 36 H 1.08996 * 117.49800 * 214.97428 * 22 16 15 37 37 H 1.09001 * 117.49941 * 0.02562 * 22 16 15 38 38 H 1.08993 * 110.48816 * 335.78286 * 23 11 10 39 39 H 1.08999 * 110.48649 * 98.42695 * 23 11 10 40 40 H 1.08997 * 110.75839 * 279.63302 * 24 23 11 41 41 H 1.08999 * 110.75618 * 156.25612 * 24 23 11 42 42 H 1.09002 * 110.48939 * 203.37936 * 25 24 23 43 43 H 1.09005 * 110.48766 * 80.73330 * 25 24 23 44 44 H 1.09003 * 110.03042 * 238.56857 * 26 11 10 45 45 H 1.08998 * 110.03445 * 359.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4157 2.0937 -1.3969 5 1 1.4912 2.6275 0.7804 6 1 3.5864 1.4178 0.6164 7 6 2.0101 -1.2022 -0.0058 8 1 1.4752 -2.1350 0.0945 9 7 3.3730 -1.2054 -0.1387 10 6 4.0950 -2.4751 -0.2526 11 6 5.5743 -2.1978 -0.5272 12 7 6.1595 -1.4488 0.5876 13 6 6.2496 -2.0160 1.8069 14 8 5.9208 -3.1729 1.9633 15 6 6.7589 -1.2127 2.9758 16 6 5.5806 -0.5460 3.6885 17 6 4.3374 -1.4196 3.8671 18 9 4.7063 -2.6466 4.4289 19 9 3.4306 -0.7729 4.7136 20 9 3.7384 -1.6382 2.6218 21 6 5.3651 0.9498 3.4495 22 6 5.9022 0.4598 4.7958 23 6 5.7279 -1.4007 -1.8391 24 6 7.0141 -1.9745 -2.4839 25 6 6.9178 -3.4846 -2.1530 26 6 6.3308 -3.5228 -0.7268 27 1 -0.4850 0.8401 0.0040 28 1 3.8605 -0.3670 -0.1573 29 1 3.9967 -3.0337 0.6781 30 1 3.6764 -3.0586 -1.0726 31 1 6.4821 -0.5447 0.4483 32 1 7.2781 -1.8724 3.6712 33 1 7.4476 -0.4473 2.6182 34 1 6.0631 1.4589 2.7847 35 1 4.3375 1.3117 3.4192 36 1 5.2278 0.4994 5.6511 37 1 6.9532 0.6468 5.0161 38 1 4.8688 -1.5664 -2.4890 39 1 5.8485 -0.3381 -1.6279 40 1 7.9026 -1.5356 -2.0301 41 1 7.0102 -1.8143 -3.5620 42 1 7.9066 -3.9430 -2.1709 43 1 6.2506 -3.9869 -2.8535 44 1 7.1338 -3.6082 0.0053 45 1 5.6441 -4.3634 -0.6276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269553999.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:56 Heat of formation + Delta-G solvation = -174.706505 kcal Electronic energy + Delta-G solvation = -32624.136494 eV Core-core repulsion = 28033.676088 eV Total energy + Delta-G solvation = -4590.460406 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.96778 -48.58125 -48.36415 -41.44911 -39.36346 -38.23199 -36.23880 -34.50567 -33.31504 -31.09591 -29.72812 -29.33824 -27.48373 -26.16326 -23.76159 -23.57893 -22.53247 -21.68531 -21.26874 -20.51364 -19.53267 -19.37694 -19.12151 -18.78063 -17.29669 -17.20343 -16.47292 -16.43793 -16.06946 -15.77203 -15.49851 -15.27405 -15.18472 -15.03914 -14.88527 -14.78850 -14.69111 -14.55934 -14.40573 -14.33432 -14.01972 -13.75459 -13.68833 -13.48269 -12.84027 -12.63788 -12.50091 -12.43376 -12.20817 -12.10731 -11.96200 -11.89597 -11.80036 -11.78775 -11.64320 -11.38937 -11.36801 -10.96497 -10.52921 -9.90281 -9.19325 -7.97235 -5.27921 1.32464 1.41554 1.49201 1.63303 1.81830 2.25418 2.38402 2.52569 2.90138 3.01733 3.31916 3.44637 3.45781 3.48354 3.69972 3.73386 3.84657 3.90698 4.01263 4.12299 4.38398 4.42394 4.54118 4.54932 4.59334 4.65274 4.69614 4.75994 4.83945 4.89986 4.92420 4.93134 5.09126 5.12006 5.14407 5.22599 5.27520 5.37696 5.52015 5.75308 5.80126 6.24701 6.69613 7.13846 7.40244 7.87512 8.14592 9.25587 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.008790 B = 0.007876 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3184.557268 B = 3554.043522 C = 5421.081550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.992 5.992 2 C -0.071 4.071 3 Si 0.954 3.046 4 H -0.276 1.276 5 H -0.302 1.302 6 H -0.234 1.234 7 C -0.214 4.214 8 H 0.034 0.966 9 N -0.731 5.731 10 C 0.156 3.844 11 C 0.172 3.828 12 N -0.701 5.701 13 C 0.505 3.495 14 O -0.568 6.568 15 C -0.087 4.087 16 C -0.210 4.210 17 C 0.458 3.542 18 F -0.189 7.189 19 F -0.198 7.198 20 F -0.170 7.170 21 C -0.146 4.146 22 C -0.112 4.112 23 C -0.121 4.121 24 C -0.110 4.110 25 C -0.121 4.121 26 C -0.109 4.109 27 H 0.254 0.746 28 H 0.367 0.633 29 H 0.009 0.991 30 H 0.016 0.984 31 H 0.411 0.589 32 H 0.116 0.884 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.157 0.843 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.682 3.797 3.748 25.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.643 5.643 2 C -0.261 4.261 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.229 1.229 6 H -0.157 1.157 7 C -0.346 4.346 8 H 0.052 0.948 9 N -0.376 5.376 10 C 0.028 3.972 11 C 0.085 3.915 12 N -0.353 5.353 13 C 0.292 3.708 14 O -0.447 6.447 15 C -0.126 4.126 16 C -0.212 4.212 17 C 0.404 3.596 18 F -0.170 7.170 19 F -0.179 7.179 20 F -0.151 7.151 21 C -0.183 4.183 22 C -0.149 4.149 23 C -0.159 4.159 24 C -0.147 4.147 25 C -0.158 4.158 26 C -0.148 4.148 27 H 0.063 0.937 28 H 0.201 0.799 29 H 0.027 0.973 30 H 0.034 0.966 31 H 0.247 0.753 32 H 0.134 0.866 33 H 0.166 0.834 34 H 0.167 0.833 35 H 0.099 0.901 36 H 0.121 0.879 37 H 0.175 0.825 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 24.214 2.830 3.865 24.684 hybrid contribution -1.358 0.511 0.241 1.471 sum 22.856 3.341 4.105 23.461 Atomic orbital electron populations 1.69947 1.07521 1.26386 1.60452 1.25535 0.96084 1.01486 1.03034 0.85398 0.79527 0.78991 0.78104 1.20217 1.22945 1.15712 1.18824 0.83382 0.92770 1.39585 0.94793 1.42232 1.02552 1.03368 1.89430 1.21062 0.91027 0.87936 0.97166 1.21117 0.90456 0.93010 0.86871 1.46017 1.62016 1.18638 1.08653 1.21012 0.77461 0.87516 0.84825 1.90731 1.49760 1.19339 1.84821 1.21322 0.95382 1.01505 0.94407 1.22265 0.93746 0.92789 1.12395 1.20305 0.85747 0.79443 0.74058 1.93145 1.91469 1.46852 1.85542 1.93103 1.70991 1.81517 1.72313 1.93415 1.85273 1.94961 1.41496 1.23431 1.04002 0.89515 1.01354 1.23427 1.05715 0.94234 0.91477 1.22609 0.99603 0.99655 0.94014 1.22475 0.96620 0.94479 1.01138 1.22395 1.01177 0.97562 0.94681 1.22285 0.99003 0.95276 0.98235 0.93722 0.79921 0.97269 0.96575 0.75254 0.86606 0.83405 0.83278 0.90113 0.87926 0.82540 0.91444 0.89921 0.89658 0.89981 0.89982 0.91872 0.91341 0.93682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -66.15 13.97 21.65 0.30 -65.85 16 2 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 3 Si 0.95 44.70 27.75 68.60 1.90 46.60 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 5 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 6 H -0.23 -9.13 6.52 99.48 0.65 -8.48 16 7 C -0.21 -12.83 10.46 84.03 0.88 -11.95 16 8 H 0.03 2.33 8.06 -2.91 -0.02 2.31 16 9 N -0.73 -34.60 4.16 -343.46 -1.43 -36.03 16 10 C 0.16 6.65 4.33 86.38 0.37 7.02 16 11 C 0.17 5.13 0.57 4.33 0.00 5.14 16 12 N -0.70 -17.63 4.81 -419.65 -2.02 -19.65 16 13 C 0.50 14.26 4.42 87.66 0.39 14.65 16 14 O -0.57 -21.54 12.80 -3.04 -0.04 -21.58 16 15 C -0.09 -1.60 5.50 29.85 0.16 -1.44 16 16 C -0.21 -4.86 2.00 -52.18 -0.10 -4.97 16 17 C 0.46 16.43 2.61 71.98 0.19 16.62 16 18 F -0.19 -7.10 16.25 44.97 0.73 -6.37 16 19 F -0.20 -7.29 15.93 44.97 0.72 -6.57 16 20 F -0.17 -7.77 13.06 44.97 0.59 -7.18 16 21 C -0.15 -2.76 9.66 30.60 0.30 -2.47 16 22 C -0.11 -1.65 9.66 30.60 0.30 -1.35 16 23 C -0.12 -2.96 5.41 31.67 0.17 -2.79 16 24 C -0.11 -1.92 6.91 31.89 0.22 -1.70 16 25 C -0.12 -2.46 6.83 31.67 0.22 -2.25 16 26 C -0.11 -3.03 5.13 31.32 0.16 -2.87 16 27 H 0.25 16.12 8.31 -92.70 -0.77 15.35 16 28 H 0.37 15.73 5.09 -92.71 -0.47 15.26 16 29 H 0.01 0.47 5.74 -2.39 -0.01 0.45 16 30 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.41 7.30 8.22 -92.71 -0.76 6.54 16 32 H 0.12 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.15 1.20 7.96 -2.39 -0.02 1.18 16 34 H 0.15 1.68 8.10 -2.38 -0.02 1.66 16 35 H 0.08 2.05 8.06 -2.39 -0.02 2.03 16 36 H 0.10 1.71 7.51 -2.39 -0.02 1.69 16 37 H 0.16 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 1.98 7.85 -2.39 -0.02 1.96 16 39 H 0.08 1.76 7.70 -2.39 -0.02 1.74 16 40 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 44 H 0.07 1.92 6.79 -2.39 -0.02 1.90 16 45 H 0.04 1.48 7.67 -2.39 -0.02 1.46 16 Total: -1.00 -84.93 362.53 4.21 -80.72 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: -0.26 Total: 28.12 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 3.72 Total: 7.79 kcal Atomic # 7 Polarization: -118.38 SS G_CDS: -3.15 Total: -121.53 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.04 Total: -21.58 kcal Atomic # 9 Polarization: -22.15 SS G_CDS: 2.03 Total: -20.12 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.90 Total: 46.60 kcal Total: -84.93 4.21 -80.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269553999.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.982 kcal (2) G-P(sol) polarization free energy of solvation -84.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds