Wall clock time and date at job start Tue Mar 31 2020 21:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47073 * 179.97438 * 10 9 7 12 12 C 1.46931 * 124.37474 * 90.00265 * 11 10 9 13 13 C 1.54808 * 105.54042 * 196.74277 * 12 11 10 14 14 C 1.53202 * 101.39116 * 335.84109 * 13 12 11 15 15 C 1.53711 * 111.54009 * 261.10140 * 14 13 12 16 16 C 1.54583 * 102.78214 * 206.02663 * 15 14 13 17 17 N 1.47131 * 107.33160 * 20.88253 * 16 15 14 18 18 C 1.34778 * 125.60716 * 180.95928 * 17 16 15 19 19 O 1.21373 * 119.99752 * 179.97438 * 18 17 16 20 20 C 1.49085 * 120.00341 * 359.97427 * 18 17 16 21 21 O 1.20786 * 119.99609 * 0.02562 * 20 18 17 22 22 C 1.50697 * 120.00226 * 179.97438 * 20 18 17 23 23 C 1.53003 * 117.49562 * 223.62122 * 22 20 18 24 24 C 1.52998 * 59.99993 * 252.51116 * 23 22 20 25 25 C 1.47702 * 108.78315 * 0.93628 * 17 16 15 26 26 C 1.34887 * 124.38270 * 269.69788 * 11 10 9 27 27 O 1.21281 * 125.21356 * 358.74854 * 26 11 10 28 28 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 30 30 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 31 31 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 32 32 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 33 33 H 1.08999 * 110.23308 * 315.75780 * 12 11 10 34 34 H 1.08995 * 110.23448 * 77.64389 * 12 11 10 35 35 H 1.09007 * 111.03398 * 93.86956 * 13 12 11 36 36 H 1.08999 * 111.03886 * 217.80994 * 13 12 11 37 37 H 1.09000 * 110.74606 * 324.35310 * 15 14 13 38 38 H 1.09006 * 110.74581 * 87.70307 * 15 14 13 39 39 H 1.09002 * 109.87497 * 261.44306 * 16 15 14 40 40 H 1.09000 * 109.98940 * 140.38260 * 16 15 14 41 41 H 1.08994 * 115.55230 * 9.32854 * 22 20 18 42 42 H 1.08994 * 117.50523 * 359.97438 * 23 22 20 43 43 H 1.09003 * 117.49375 * 145.02254 * 23 22 20 44 44 H 1.08999 * 117.49993 * 252.51357 * 24 23 22 45 45 H 1.08994 * 117.51987 * 107.48380 * 24 23 22 46 46 H 1.09004 * 110.38914 * 218.58540 * 25 17 16 47 47 H 1.08999 * 110.48871 * 96.25277 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5127 -4.9308 0.0001 12 6 1.0975 -5.6496 -1.2123 13 6 0.0190 -6.6583 -0.7476 14 6 0.3813 -6.8288 0.7312 15 6 1.2051 -8.1049 0.9669 16 6 0.8885 -8.4491 2.4403 17 7 -0.3721 -7.7742 2.7869 18 6 -0.9771 -7.8119 3.9907 19 8 -2.0191 -7.2144 4.1650 20 6 -0.3666 -8.5875 5.1080 21 8 0.6706 -9.1817 4.9345 22 6 -1.0428 -8.6291 6.4540 23 6 -0.1606 -8.4640 7.6932 24 6 -0.7534 -9.8329 7.3530 25 6 -0.8651 -7.0482 1.5989 26 6 1.1373 -5.5931 1.1136 27 8 1.3729 -5.2406 2.2499 28 1 -0.4850 0.8401 0.0004 29 1 0.6247 -2.5571 0.8897 30 1 0.6240 -2.5568 -0.8903 31 1 2.8719 -3.6044 -0.8906 32 1 2.8719 -3.6044 0.8894 33 1 0.6753 -4.9536 -1.9372 34 1 1.9464 -6.1772 -1.6471 35 1 -0.9816 -6.2406 -0.8598 36 1 0.1095 -7.6027 -1.2841 37 1 0.8758 -8.9050 0.3040 38 1 2.2692 -7.9071 0.8365 39 1 1.6906 -8.0901 3.0853 40 1 0.7754 -9.5271 2.5551 41 1 -2.0458 -8.2040 6.4897 42 1 0.9089 -8.3257 7.5349 43 1 -0.5832 -7.9300 8.5443 44 1 -1.5660 -10.1994 7.9803 45 1 -0.0743 -10.5949 6.9707 46 1 -1.2978 -6.0913 1.8911 47 1 -1.6002 -7.6485 1.0628 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270755034.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:42 Heat of formation + Delta-G solvation = -65.209522 kcal Electronic energy + Delta-G solvation = -29280.106641 eV Core-core repulsion = 25236.251121 eV Total energy + Delta-G solvation = -4043.855520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.38892 -40.47655 -38.73826 -37.19980 -36.46461 -36.05544 -33.89150 -32.46913 -30.53161 -29.47559 -28.34030 -27.15983 -25.35377 -24.41430 -23.06190 -22.80633 -21.93282 -21.54174 -20.47695 -19.32742 -18.74742 -17.69908 -16.94505 -16.70764 -16.27203 -15.74968 -15.68952 -15.50107 -15.20894 -14.87346 -14.63548 -14.45419 -14.00942 -13.73146 -13.44347 -13.27862 -13.04950 -12.92733 -12.74406 -12.62265 -12.37194 -12.24613 -12.13018 -11.92477 -11.62022 -11.58355 -11.33365 -11.13828 -10.96528 -10.95351 -10.89276 -10.81527 -10.69267 -10.02426 -9.89567 -9.54972 -9.39195 -9.14769 -8.83911 -8.38874 -8.06858 -6.03784 -4.07583 0.77524 2.38704 2.77161 2.86007 3.31006 3.36466 3.38700 3.47375 3.54515 3.68956 4.13899 4.26732 4.30044 4.34653 4.44197 4.54618 4.57595 4.71524 4.84903 4.88668 5.00378 5.17650 5.24126 5.27203 5.32380 5.41411 5.45015 5.48245 5.52674 5.63890 5.65603 5.71442 5.72084 5.74656 5.84367 5.94891 5.97064 6.03208 6.42343 6.70095 6.77250 6.94031 7.21620 7.44354 7.63858 7.78590 7.80682 7.95301 8.31162 8.60055 8.98979 9.56656 11.07593 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013944 B = 0.002810 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.510452 B = 9961.553279 C =11115.103285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.273 1.273 6 H -0.286 1.286 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.012 3.988 10 C 0.128 3.872 11 N -0.611 5.611 12 C 0.102 3.898 13 C -0.117 4.117 14 C -0.115 4.115 15 C -0.108 4.108 16 C 0.108 3.892 17 N -0.585 5.585 18 C 0.497 3.503 19 O -0.510 6.510 20 C 0.386 3.614 21 O -0.421 6.421 22 C -0.209 4.209 23 C -0.144 4.144 24 C -0.148 4.148 25 C 0.130 3.870 26 C 0.527 3.473 27 O -0.519 6.519 28 H 0.261 0.739 29 H 0.020 0.980 30 H 0.017 0.983 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.139 0.861 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.105 0.895 46 H 0.089 0.911 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.152 -23.963 4.059 24.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.198 1.198 6 H -0.212 1.212 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.026 4.026 10 C 0.008 3.992 11 N -0.344 5.344 12 C -0.022 4.022 13 C -0.155 4.155 14 C -0.120 4.120 15 C -0.146 4.146 16 C -0.015 4.015 17 N -0.320 5.320 18 C 0.282 3.718 19 O -0.386 6.386 20 C 0.257 3.743 21 O -0.292 6.292 22 C -0.229 4.229 23 C -0.181 4.181 24 C -0.185 4.185 25 C 0.008 3.992 26 C 0.312 3.688 27 O -0.394 6.394 28 H 0.071 0.929 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.157 0.843 42 H 0.122 0.878 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.123 0.877 46 H 0.108 0.892 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.140 -23.573 4.729 24.070 hybrid contribution 0.331 1.221 -0.220 1.284 sum -0.810 -22.352 4.510 22.816 Atomic orbital electron populations 1.69973 1.06108 1.26746 1.50229 1.25007 0.94857 0.99334 0.95067 0.86550 0.79745 0.83228 0.78214 1.20565 1.19810 1.21171 1.21072 0.93018 0.90667 1.51465 0.92488 1.19401 0.94409 0.91037 0.97718 1.21813 0.95067 0.80870 1.01413 1.48683 1.56515 1.23253 1.05981 1.22101 0.96909 0.94552 0.88628 1.22474 1.00277 1.00438 0.92308 1.21625 0.96889 0.96151 0.97305 1.22497 1.01058 0.95270 0.95796 1.22246 0.86045 0.97220 0.95984 1.48405 1.24320 1.49012 1.10218 1.20338 0.85529 0.83202 0.82778 1.90768 1.22540 1.43803 1.81518 1.23784 0.84216 0.77104 0.89209 1.90395 1.20541 1.34709 1.83518 1.22506 1.03280 1.07452 0.89620 1.23023 0.99430 0.99662 0.95951 1.23025 1.03564 0.91158 1.00748 1.22017 0.94645 0.98192 0.84350 1.19885 0.79688 0.84195 0.85019 1.90721 1.57013 1.71028 1.20676 0.92889 0.96177 0.96424 0.91539 0.91157 0.89851 0.91372 0.89265 0.88840 0.89123 0.89366 0.90175 0.90393 0.84345 0.87813 0.87209 0.87410 0.87703 0.89235 0.89705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.01 0.32 5.30 -27.89 -0.15 0.17 16 10 C 0.13 2.68 5.89 -4.04 -0.02 2.65 16 11 N -0.61 -10.69 2.95 -172.56 -0.51 -11.20 16 12 C 0.10 1.24 7.37 -2.85 -0.02 1.22 16 13 C -0.12 -1.12 6.26 -25.67 -0.16 -1.29 16 14 C -0.12 -1.44 0.68 -155.38 -0.11 -1.55 16 15 C -0.11 -1.04 5.94 -25.53 -0.15 -1.19 16 16 C 0.11 1.24 5.46 -2.87 -0.02 1.23 16 17 N -0.59 -8.16 3.34 -171.60 -0.57 -8.73 16 18 C 0.50 7.44 7.89 -11.76 -0.09 7.35 16 19 O -0.51 -8.92 16.67 5.48 0.09 -8.83 16 20 C 0.39 4.86 6.93 -29.81 -0.21 4.65 16 21 O -0.42 -5.45 14.18 5.98 0.08 -5.37 16 22 C -0.21 -2.10 5.95 -91.77 -0.55 -2.65 16 23 C -0.14 -1.19 10.14 -26.73 -0.27 -1.46 16 24 C -0.15 -1.10 10.05 -26.73 -0.27 -1.37 16 25 C 0.13 1.74 5.74 -3.15 -0.02 1.72 16 26 C 0.53 9.51 6.72 -11.36 -0.08 9.44 16 27 O -0.52 -11.73 17.49 5.56 0.10 -11.63 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.02 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.07 1.56 7.93 -51.93 -0.41 1.15 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.85 7.97 -51.93 -0.41 0.44 16 36 H 0.09 0.58 7.62 -51.93 -0.40 0.18 16 37 H 0.09 0.59 7.74 -51.93 -0.40 0.19 16 38 H 0.09 0.85 7.99 -51.93 -0.42 0.44 16 39 H 0.08 1.08 7.59 -51.93 -0.39 0.68 16 40 H 0.08 0.76 7.68 -51.93 -0.40 0.36 16 41 H 0.14 1.38 7.72 -51.93 -0.40 0.98 16 42 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.10 0.80 7.89 -51.93 -0.41 0.39 16 46 H 0.09 1.47 7.95 -51.93 -0.41 1.06 16 47 H 0.08 0.88 8.04 -51.93 -0.42 0.47 16 LS Contribution 390.97 15.07 5.89 5.89 Total: -1.00 -36.40 390.97 -9.11 -45.52 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -7.39 Total: -1.39 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -2.52 Total: 5.35 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.35 Total: -46.33 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: 0.27 Total: -25.83 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.40 -9.11 -45.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270755034.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.693 kcal (2) G-P(sol) polarization free energy of solvation -36.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds