Wall clock time and date at job start Tue Mar 31 2020 21:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47073 * 179.97438 * 10 9 7 12 12 C 1.46931 * 124.37474 * 90.00265 * 11 10 9 13 13 C 1.54808 * 105.54042 * 196.74277 * 12 11 10 14 14 C 1.53202 * 101.39116 * 335.84109 * 13 12 11 15 15 C 1.53711 * 111.54009 * 261.10140 * 14 13 12 16 16 C 1.54583 * 102.78214 * 206.02663 * 15 14 13 17 17 N 1.47131 * 107.33160 * 20.88253 * 16 15 14 18 18 C 1.34778 * 125.60716 * 180.95928 * 17 16 15 19 19 O 1.21373 * 119.99752 * 179.97438 * 18 17 16 20 20 C 1.49085 * 120.00341 * 359.97427 * 18 17 16 21 21 O 1.20786 * 119.99609 * 0.02562 * 20 18 17 22 22 C 1.50697 * 120.00226 * 179.97438 * 20 18 17 23 23 C 1.53003 * 117.49562 * 223.62122 * 22 20 18 24 24 C 1.52998 * 59.99993 * 252.51116 * 23 22 20 25 25 C 1.47702 * 108.78315 * 0.93628 * 17 16 15 26 26 C 1.34887 * 124.38270 * 269.69788 * 11 10 9 27 27 O 1.21281 * 125.21356 * 358.74854 * 26 11 10 28 28 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 30 30 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 31 31 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 32 32 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 33 33 H 1.08999 * 110.23308 * 315.75780 * 12 11 10 34 34 H 1.08995 * 110.23448 * 77.64389 * 12 11 10 35 35 H 1.09007 * 111.03398 * 93.86956 * 13 12 11 36 36 H 1.08999 * 111.03886 * 217.80994 * 13 12 11 37 37 H 1.09000 * 110.74606 * 324.35310 * 15 14 13 38 38 H 1.09006 * 110.74581 * 87.70307 * 15 14 13 39 39 H 1.09002 * 109.87497 * 261.44306 * 16 15 14 40 40 H 1.09000 * 109.98940 * 140.38260 * 16 15 14 41 41 H 1.08994 * 115.55230 * 9.32854 * 22 20 18 42 42 H 1.08994 * 117.50523 * 359.97438 * 23 22 20 43 43 H 1.09003 * 117.49375 * 145.02254 * 23 22 20 44 44 H 1.08999 * 117.49993 * 252.51357 * 24 23 22 45 45 H 1.08994 * 117.51987 * 107.48380 * 24 23 22 46 46 H 1.09004 * 110.38914 * 218.58540 * 25 17 16 47 47 H 1.08999 * 110.48871 * 96.25277 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5127 -4.9308 0.0001 12 6 1.0975 -5.6496 -1.2123 13 6 0.0190 -6.6583 -0.7476 14 6 0.3813 -6.8288 0.7312 15 6 1.2051 -8.1049 0.9669 16 6 0.8885 -8.4491 2.4403 17 7 -0.3721 -7.7742 2.7869 18 6 -0.9771 -7.8119 3.9907 19 8 -2.0191 -7.2144 4.1650 20 6 -0.3666 -8.5875 5.1080 21 8 0.6706 -9.1817 4.9345 22 6 -1.0428 -8.6291 6.4540 23 6 -0.1606 -8.4640 7.6932 24 6 -0.7534 -9.8329 7.3530 25 6 -0.8651 -7.0482 1.5989 26 6 1.1373 -5.5931 1.1136 27 8 1.3729 -5.2406 2.2499 28 1 -0.4850 0.8401 0.0004 29 1 0.6247 -2.5571 0.8897 30 1 0.6240 -2.5568 -0.8903 31 1 2.8719 -3.6044 -0.8906 32 1 2.8719 -3.6044 0.8894 33 1 0.6753 -4.9536 -1.9372 34 1 1.9464 -6.1772 -1.6471 35 1 -0.9816 -6.2406 -0.8598 36 1 0.1095 -7.6027 -1.2841 37 1 0.8758 -8.9050 0.3040 38 1 2.2692 -7.9071 0.8365 39 1 1.6906 -8.0901 3.0853 40 1 0.7754 -9.5271 2.5551 41 1 -2.0458 -8.2040 6.4897 42 1 0.9089 -8.3257 7.5349 43 1 -0.5832 -7.9300 8.5443 44 1 -1.5660 -10.1994 7.9803 45 1 -0.0743 -10.5949 6.9707 46 1 -1.2978 -6.0913 1.8911 47 1 -1.6002 -7.6485 1.0628 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270755034.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:41 Heat of formation + Delta-G solvation = -89.995836 kcal Electronic energy + Delta-G solvation = -29281.181457 eV Core-core repulsion = 25236.251121 eV Total energy + Delta-G solvation = -4044.930335 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.50125 -41.55428 -39.85291 -38.39452 -37.54336 -37.23186 -35.71471 -34.12277 -31.93417 -30.72746 -29.57840 -28.15783 -27.10726 -25.64501 -24.08678 -23.53676 -23.42837 -22.47337 -21.88141 -20.33033 -20.02689 -18.76462 -18.72245 -17.95614 -17.40578 -17.21150 -16.91017 -16.64980 -16.47265 -16.27378 -15.81937 -15.57895 -15.02204 -14.99051 -14.68675 -14.48492 -14.43581 -14.36673 -13.99117 -13.78749 -13.74134 -13.56036 -13.24442 -13.01104 -12.89365 -12.65339 -12.60504 -12.53301 -12.50438 -12.13339 -12.00760 -11.88648 -11.66485 -11.63050 -11.60388 -11.44394 -10.69844 -10.62348 -10.59808 -9.94181 -9.57466 -8.27332 -6.40626 -0.25044 1.35764 1.37009 1.38902 1.47907 1.50417 1.73078 2.11775 2.38411 2.70498 2.82602 3.06218 3.18552 3.21225 3.36836 3.55678 3.73037 3.81880 3.90581 3.92890 4.11109 4.14052 4.25329 4.32105 4.34752 4.46396 4.52424 4.58185 4.65154 4.68967 4.74964 4.77199 4.83945 4.85858 4.92203 4.98367 5.00471 5.07381 5.12345 5.17582 5.29346 5.42018 5.56121 5.70499 5.79026 6.11185 6.14874 6.26387 6.66453 6.75059 7.17290 7.29591 8.84885 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013944 B = 0.002810 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.510452 B = 9961.553279 C =11115.103285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.971 3.029 4 H -0.278 1.278 5 H -0.255 1.255 6 H -0.278 1.278 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.024 3.976 10 C 0.143 3.857 11 N -0.619 5.619 12 C 0.091 3.909 13 C -0.101 4.101 14 C -0.106 4.106 15 C -0.094 4.094 16 C 0.103 3.897 17 N -0.589 5.589 18 C 0.482 3.518 19 O -0.549 6.549 20 C 0.388 3.612 21 O -0.428 6.428 22 C -0.231 4.231 23 C -0.143 4.143 24 C -0.123 4.123 25 C 0.126 3.874 26 C 0.508 3.492 27 O -0.582 6.582 28 H 0.265 0.735 29 H -0.034 1.034 30 H 0.003 0.997 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.150 0.850 37 H 0.144 0.856 38 H 0.091 0.909 39 H 0.052 0.948 40 H 0.103 0.897 41 H 0.135 0.865 42 H 0.094 0.906 43 H 0.128 0.872 44 H 0.135 0.865 45 H 0.105 0.895 46 H 0.043 0.957 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.135 -26.431 2.373 26.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.794 3.206 4 H -0.204 1.204 5 H -0.179 1.179 6 H -0.204 1.204 7 C -0.584 4.584 8 H 0.085 0.915 9 C -0.014 4.014 10 C 0.021 3.979 11 N -0.351 5.351 12 C -0.030 4.030 13 C -0.139 4.139 14 C -0.111 4.111 15 C -0.132 4.132 16 C -0.019 4.019 17 N -0.322 5.322 18 C 0.268 3.732 19 O -0.428 6.428 20 C 0.260 3.740 21 O -0.300 6.300 22 C -0.251 4.251 23 C -0.180 4.180 24 C -0.160 4.160 25 C 0.003 3.997 26 C 0.297 3.703 27 O -0.462 6.462 28 H 0.073 0.927 29 H -0.015 1.015 30 H 0.021 0.979 31 H 0.113 0.887 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.124 0.876 35 H 0.106 0.894 36 H 0.168 0.832 37 H 0.162 0.838 38 H 0.110 0.890 39 H 0.070 0.930 40 H 0.121 0.879 41 H 0.153 0.847 42 H 0.113 0.887 43 H 0.146 0.854 44 H 0.153 0.847 45 H 0.124 0.876 46 H 0.062 0.938 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.100 -26.084 2.983 26.254 hybrid contribution 0.004 2.027 0.322 2.052 sum -0.096 -24.057 3.305 24.283 Atomic orbital electron populations 1.70121 1.08047 1.27964 1.51161 1.26051 0.95791 1.03703 0.94351 0.85365 0.78914 0.77928 0.78349 1.20385 1.17864 1.20367 1.21552 0.93769 0.91785 1.51290 0.91453 1.19207 0.94568 0.93299 0.94298 1.21333 0.93825 0.81075 1.01642 1.48811 1.55898 1.22132 1.08267 1.22541 0.99248 0.94874 0.86334 1.22626 0.99190 1.02194 0.89890 1.21592 0.96063 0.94466 0.98934 1.22640 1.00895 0.94686 0.94958 1.22424 0.84080 0.98207 0.97143 1.48656 1.24877 1.48515 1.10175 1.20985 0.85373 0.83182 0.83697 1.90729 1.24261 1.45603 1.82239 1.23848 0.84138 0.76504 0.89519 1.90377 1.20727 1.35141 1.83721 1.22520 1.03303 1.10440 0.88826 1.23167 0.98751 1.00856 0.95261 1.23181 1.03709 0.90193 0.98874 1.22157 0.95857 0.96861 0.84782 1.21009 0.79239 0.85916 0.84182 1.90672 1.59268 1.73032 1.23204 0.92674 1.01538 0.97867 0.88708 0.93322 0.90325 0.87560 0.89382 0.83176 0.83847 0.89036 0.92954 0.87880 0.84681 0.88704 0.85354 0.84736 0.87623 0.93811 0.85744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.75 13.29 21.45 0.28 -58.46 16 2 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 3 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.25 -11.04 7.11 99.48 0.71 -10.34 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.55 -31.85 9.11 25.60 0.23 -31.62 16 8 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 9 C 0.02 1.34 5.30 29.85 0.16 1.50 16 10 C 0.14 6.16 5.89 86.38 0.51 6.67 16 11 N -0.62 -21.83 2.95 -818.18 -2.41 -24.24 16 12 C 0.09 1.98 7.37 86.91 0.64 2.62 16 13 C -0.10 -1.56 6.26 31.28 0.20 -1.37 16 14 C -0.11 -2.50 0.68 -52.74 -0.04 -2.53 16 15 C -0.09 -1.49 5.94 31.37 0.19 -1.30 16 16 C 0.10 2.27 5.46 86.80 0.47 2.75 16 17 N -0.59 -16.71 3.34 -815.17 -2.72 -19.43 16 18 C 0.48 15.24 7.89 87.16 0.69 15.92 16 19 O -0.55 -20.64 16.67 -3.32 -0.06 -20.69 16 20 C 0.39 10.11 6.93 28.60 0.20 10.31 16 21 O -0.43 -11.21 14.18 -1.53 -0.02 -11.23 16 22 C -0.23 -4.71 5.95 -11.54 -0.07 -4.77 16 23 C -0.14 -2.30 10.14 30.59 0.31 -1.99 16 24 C -0.12 -1.64 10.05 30.59 0.31 -1.33 16 25 C 0.13 3.35 5.74 86.30 0.50 3.85 16 26 C 0.51 19.00 6.72 87.36 0.59 19.59 16 27 O -0.58 -28.41 17.49 -3.03 -0.05 -28.46 16 28 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 29 H -0.03 -2.21 8.14 -2.38 -0.02 -2.22 16 30 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 32 H 0.05 2.28 7.93 -2.39 -0.02 2.26 16 33 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.09 1.43 7.97 -2.38 -0.02 1.41 16 36 H 0.15 0.74 7.62 -2.39 -0.02 0.72 16 37 H 0.14 0.87 7.74 -2.39 -0.02 0.85 16 38 H 0.09 1.47 7.99 -2.38 -0.02 1.45 16 39 H 0.05 1.44 7.59 -2.39 -0.02 1.43 16 40 H 0.10 1.76 7.68 -2.39 -0.02 1.74 16 41 H 0.14 2.81 7.72 -2.39 -0.02 2.79 16 42 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.11 1.43 7.89 -2.39 -0.02 1.41 16 46 H 0.04 1.56 7.95 -2.39 -0.02 1.54 16 47 H 0.12 2.32 8.04 -2.39 -0.02 2.30 16 Total: -1.00 -88.79 390.97 3.35 -85.43 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.97 Total: 11.16 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 5.34 Total: 18.70 kcal Atomic # 7 Polarization: -97.29 SS G_CDS: -4.85 Total: -102.14 kcal Atomic # 8 Polarization: -60.25 SS G_CDS: -0.13 Total: -60.38 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -88.79 3.35 -85.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270755034.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.561 kcal (2) G-P(sol) polarization free energy of solvation -88.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds