Wall clock time and date at job start Tue Mar 31 2020 21:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47337 * 179.97438 * 10 9 7 12 12 C 1.46931 * 124.37944 * 89.99727 * 11 10 9 13 13 C 1.54791 * 105.54375 * 196.74834 * 12 11 10 14 14 C 1.53210 * 101.39498 * 335.83828 * 13 12 11 15 15 C 1.53703 * 111.54235 * 145.78979 * 14 13 12 16 16 C 1.54581 * 102.78530 * 153.97265 * 15 14 13 17 17 N 1.47138 * 107.33017 * 339.12287 * 16 15 14 18 18 C 1.34776 * 125.61330 * 179.08218 * 17 16 15 19 19 O 1.21358 * 120.00648 * 179.97438 * 18 17 16 20 20 C 1.49087 * 119.99459 * 359.97438 * 18 17 16 21 21 O 1.20786 * 120.00313 * 359.97438 * 20 18 17 22 22 C 1.50707 * 120.00029 * 179.97438 * 20 18 17 23 23 C 1.53000 * 117.49692 * 223.62019 * 22 20 18 24 24 C 1.52992 * 117.50085 * 154.99703 * 22 20 18 25 25 C 1.47714 * 108.78324 * 359.06552 * 17 16 15 26 26 C 1.34889 * 124.37773 * 269.69686 * 11 10 9 27 27 O 1.21276 * 125.21742 * 358.74322 * 26 11 10 28 28 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 30 30 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 31 31 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 32 32 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 33 33 H 1.09007 * 110.22955 * 315.76566 * 12 11 10 34 34 H 1.08998 * 110.23126 * 77.72679 * 12 11 10 35 35 H 1.09000 * 111.04075 * 93.86602 * 13 12 11 36 36 H 1.09004 * 111.04066 * 217.77082 * 13 12 11 37 37 H 1.09000 * 110.75126 * 272.30207 * 15 14 13 38 38 H 1.09002 * 110.74411 * 35.46787 * 15 14 13 39 39 H 1.09006 * 109.87043 * 98.55220 * 16 15 14 40 40 H 1.08998 * 109.87501 * 219.68824 * 16 15 14 41 41 H 1.08996 * 115.54438 * 9.32764 * 22 20 18 42 42 H 1.08994 * 117.49932 * 359.97438 * 23 22 20 43 43 H 1.09006 * 117.49184 * 145.01974 * 23 22 20 44 44 H 1.09000 * 117.50262 * 214.97716 * 24 22 20 45 45 H 1.09009 * 117.50090 * 0.02562 * 24 22 20 46 46 H 1.09000 * 110.38860 * 263.79375 * 25 17 16 47 47 H 1.08993 * 110.39072 * 141.41000 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 7 5.4865 -2.6366 -0.0014 12 6 6.3163 -2.6378 1.2112 13 6 7.7291 -2.2076 0.7475 14 6 7.6962 -2.6051 -0.7318 15 6 8.5063 -1.6267 -1.5972 16 6 8.9145 -2.4976 -2.8073 17 7 8.8182 -3.9044 -2.3872 18 6 9.0755 -4.9750 -3.1644 19 8 8.9635 -6.0951 -2.7111 20 6 9.4978 -4.7831 -4.5813 21 8 9.6089 -3.6683 -5.0327 22 6 9.7862 -5.9801 -5.4504 23 6 11.0305 -5.9246 -6.3389 24 6 9.6387 -5.8066 -6.9633 25 6 8.3934 -3.9505 -0.9732 26 6 6.2481 -2.6415 -1.1147 27 8 5.8255 -2.6681 -2.2511 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6797 -0.8895 30 1 3.8746 -0.6808 0.8905 31 1 3.6579 -3.1514 0.8880 32 1 3.6585 -3.1495 -0.8920 33 1 5.9243 -1.9249 1.9368 34 1 6.3497 -3.6375 1.6441 35 1 7.8677 -1.1324 0.8608 36 1 8.5016 -2.7583 1.2842 37 1 7.8864 -0.7887 -1.9160 38 1 9.3854 -1.2720 -1.0590 39 1 8.2378 -2.3130 -3.6417 40 1 9.9388 -2.2678 -3.1005 41 1 9.5133 -6.9460 -5.0255 42 1 11.6403 -5.0222 -6.2953 43 1 11.5766 -6.8543 -6.4987 44 1 9.2692 -6.6586 -7.5339 45 1 9.3334 -4.8266 -7.3302 46 1 9.2598 -4.0519 -0.3195 47 1 7.6971 -4.7734 -0.8125 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270755037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:58 Heat of formation + Delta-G solvation = -61.977469 kcal Electronic energy + Delta-G solvation = -29309.504742 eV Core-core repulsion = 25265.789374 eV Total energy + Delta-G solvation = -4043.715368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 6.54 seconds Orbital eigenvalues (eV) -41.50498 -40.57322 -38.85732 -37.31398 -36.54373 -36.18608 -33.98574 -32.52250 -30.85349 -29.54236 -28.58547 -27.26037 -25.56275 -24.70263 -22.92777 -22.87522 -21.81732 -21.62776 -20.44074 -19.43363 -18.87170 -17.73885 -17.09361 -17.00540 -16.49771 -16.12323 -15.74646 -15.58240 -15.12785 -14.99227 -14.71966 -14.24234 -14.07864 -13.76354 -13.52312 -13.38406 -13.28694 -12.99827 -12.95430 -12.85538 -12.65251 -12.50799 -12.09420 -11.98950 -11.74314 -11.63302 -11.60681 -11.16234 -11.04552 -11.02380 -10.97751 -10.95197 -10.52506 -10.07992 -9.92663 -9.65747 -9.44345 -9.25063 -8.97986 -8.59185 -8.23901 -6.09654 -4.08897 0.68213 2.26790 2.64663 2.74024 3.26095 3.33180 3.34872 3.39490 3.47047 3.58965 4.03481 4.16912 4.25410 4.26685 4.40818 4.47115 4.48785 4.61583 4.76590 4.78876 4.96793 5.07404 5.16716 5.20202 5.24220 5.30056 5.35344 5.38770 5.51474 5.55270 5.57457 5.59832 5.65486 5.66098 5.77305 5.85697 5.89238 5.94596 6.26806 6.54284 6.61906 6.74538 7.08152 7.09813 7.28573 7.54118 7.64475 7.71046 8.42513 8.48419 8.93379 9.51922 11.03422 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017352 B = 0.002729 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.251303 B =10258.915867 C =10765.368580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.070 3.930 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.266 1.266 6 H -0.287 1.287 7 C -0.522 4.522 8 H 0.074 0.926 9 C -0.023 4.023 10 C 0.136 3.864 11 N -0.614 5.614 12 C 0.098 3.902 13 C -0.117 4.117 14 C -0.117 4.117 15 C -0.109 4.109 16 C 0.108 3.892 17 N -0.588 5.588 18 C 0.497 3.503 19 O -0.514 6.514 20 C 0.383 3.617 21 O -0.416 6.416 22 C -0.209 4.209 23 C -0.145 4.145 24 C -0.147 4.147 25 C 0.132 3.868 26 C 0.527 3.473 27 O -0.517 6.517 28 H 0.264 0.736 29 H 0.020 0.980 30 H 0.013 0.987 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.138 0.862 42 H 0.102 0.898 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.106 0.894 46 H 0.087 0.913 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.252 -8.603 -4.064 27.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.191 1.191 6 H -0.212 1.212 7 C -0.561 4.561 8 H 0.092 0.908 9 C -0.061 4.061 10 C 0.017 3.983 11 N -0.348 5.348 12 C -0.025 4.025 13 C -0.155 4.155 14 C -0.121 4.121 15 C -0.148 4.148 16 C -0.015 4.015 17 N -0.322 5.322 18 C 0.282 3.718 19 O -0.391 6.391 20 C 0.254 3.746 21 O -0.287 6.287 22 C -0.228 4.228 23 C -0.182 4.182 24 C -0.184 4.184 25 C 0.009 3.991 26 C 0.312 3.688 27 O -0.393 6.393 28 H 0.074 0.926 29 H 0.038 0.962 30 H 0.031 0.969 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.156 0.844 42 H 0.121 0.879 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.125 0.875 46 H 0.105 0.895 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 25.767 -8.557 -4.728 27.559 hybrid contribution 0.100 0.941 0.297 0.991 sum 25.867 -7.617 -4.431 27.326 Atomic orbital electron populations 1.69906 1.06258 1.27004 1.50664 1.24984 0.94728 0.99144 0.94356 0.86764 0.80462 0.83605 0.78392 1.20274 1.19095 1.21247 1.20954 0.88866 0.94735 1.51499 0.90797 1.19883 0.97349 0.92197 0.96682 1.21604 0.74175 1.00220 1.02344 1.48723 1.07673 1.72279 1.06092 1.22157 0.89925 1.01923 0.88525 1.22476 0.97479 1.03149 0.92368 1.21631 0.95435 0.97133 0.97898 1.22475 0.99816 0.97511 0.94954 1.22286 1.02224 0.78818 0.98132 1.48510 1.64559 1.06920 1.12260 1.20394 0.79719 0.84105 0.87568 1.90749 1.51162 1.22909 1.74232 1.23764 0.73275 0.89789 0.87758 1.90420 1.36692 1.27007 1.74546 1.22500 1.07059 0.99942 0.93346 1.23009 0.90326 1.04381 1.00463 1.23052 0.99428 1.04642 0.91263 1.22021 0.98833 0.96507 0.81711 1.19914 0.87349 0.76474 0.85037 1.90718 1.78198 1.49739 1.20618 0.92613 0.96212 0.96916 0.90883 0.90527 0.89812 0.91117 0.89091 0.88822 0.88989 0.89284 0.89618 0.90446 0.84379 0.87939 0.87295 0.87285 0.87523 0.89495 0.89615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.75 13.96 55.43 0.77 -26.97 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.52 -14.86 9.66 -34.44 -0.33 -15.19 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.02 -0.55 4.36 -27.88 -0.12 -0.67 16 10 C 0.14 2.74 5.89 -4.04 -0.02 2.72 16 11 N -0.61 -10.19 2.95 -172.56 -0.51 -10.70 16 12 C 0.10 1.11 7.37 -2.86 -0.02 1.09 16 13 C -0.12 -1.00 6.26 -25.68 -0.16 -1.17 16 14 C -0.12 -1.36 0.68 -155.37 -0.11 -1.47 16 15 C -0.11 -1.12 5.81 -25.53 -0.15 -1.27 16 16 C 0.11 1.24 5.24 -2.86 -0.02 1.23 16 17 N -0.59 -7.48 3.34 -171.59 -0.57 -8.05 16 18 C 0.50 6.73 7.89 -11.76 -0.09 6.64 16 19 O -0.51 -7.97 16.67 5.49 0.09 -7.88 16 20 C 0.38 4.50 6.93 -29.80 -0.21 4.29 16 21 O -0.42 -5.24 14.18 5.98 0.08 -5.15 16 22 C -0.21 -1.91 5.95 -91.77 -0.55 -2.46 16 23 C -0.14 -0.97 10.14 -26.73 -0.27 -1.24 16 24 C -0.15 -1.09 10.05 -26.74 -0.27 -1.36 16 25 C 0.13 1.49 5.88 -3.14 -0.02 1.47 16 26 C 0.53 9.01 6.77 -11.35 -0.08 8.93 16 27 O -0.52 -11.07 17.26 5.56 0.10 -10.97 16 28 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.02 0.51 7.20 -51.93 -0.37 0.13 16 30 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.08 1.68 7.93 -51.93 -0.41 1.26 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.72 7.96 -51.93 -0.41 0.30 16 36 H 0.09 0.53 7.63 -51.93 -0.40 0.13 16 37 H 0.09 1.06 8.01 -51.93 -0.42 0.64 16 38 H 0.09 0.63 8.04 -51.93 -0.42 0.21 16 39 H 0.09 1.19 7.59 -51.93 -0.39 0.79 16 40 H 0.08 0.76 7.69 -51.93 -0.40 0.36 16 41 H 0.14 1.24 7.72 -51.93 -0.40 0.84 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.11 0.87 7.89 -51.92 -0.41 0.46 16 46 H 0.09 0.73 7.75 -51.93 -0.40 0.33 16 47 H 0.09 1.11 7.93 -51.93 -0.41 0.70 16 LS Contribution 386.99 15.07 5.83 5.83 Total: -1.00 -36.09 386.99 -8.74 -44.84 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -7.36 Total: -1.62 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -2.51 Total: 3.48 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: -0.31 Total: -45.73 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: 0.27 Total: -24.00 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.09 -8.74 -44.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270755037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.141 kcal (2) G-P(sol) polarization free energy of solvation -36.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.54 seconds