Wall clock time and date at job start Tue Mar 31 2020 21:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47337 * 179.97438 * 10 9 7 12 12 C 1.46931 * 124.37944 * 89.99727 * 11 10 9 13 13 C 1.54791 * 105.54375 * 196.74834 * 12 11 10 14 14 C 1.53210 * 101.39498 * 335.83828 * 13 12 11 15 15 C 1.53703 * 111.54235 * 145.78979 * 14 13 12 16 16 C 1.54581 * 102.78530 * 153.97265 * 15 14 13 17 17 N 1.47138 * 107.33017 * 339.12287 * 16 15 14 18 18 C 1.34776 * 125.61330 * 179.08218 * 17 16 15 19 19 O 1.21358 * 120.00648 * 179.97438 * 18 17 16 20 20 C 1.49087 * 119.99459 * 359.97438 * 18 17 16 21 21 O 1.20786 * 120.00313 * 359.97438 * 20 18 17 22 22 C 1.50707 * 120.00029 * 179.97438 * 20 18 17 23 23 C 1.53000 * 117.49692 * 223.62019 * 22 20 18 24 24 C 1.52992 * 117.50085 * 154.99703 * 22 20 18 25 25 C 1.47714 * 108.78324 * 359.06552 * 17 16 15 26 26 C 1.34889 * 124.37773 * 269.69686 * 11 10 9 27 27 O 1.21276 * 125.21742 * 358.74322 * 26 11 10 28 28 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 30 30 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 31 31 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 32 32 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 33 33 H 1.09007 * 110.22955 * 315.76566 * 12 11 10 34 34 H 1.08998 * 110.23126 * 77.72679 * 12 11 10 35 35 H 1.09000 * 111.04075 * 93.86602 * 13 12 11 36 36 H 1.09004 * 111.04066 * 217.77082 * 13 12 11 37 37 H 1.09000 * 110.75126 * 272.30207 * 15 14 13 38 38 H 1.09002 * 110.74411 * 35.46787 * 15 14 13 39 39 H 1.09006 * 109.87043 * 98.55220 * 16 15 14 40 40 H 1.08998 * 109.87501 * 219.68824 * 16 15 14 41 41 H 1.08996 * 115.54438 * 9.32764 * 22 20 18 42 42 H 1.08994 * 117.49932 * 359.97438 * 23 22 20 43 43 H 1.09006 * 117.49184 * 145.01974 * 23 22 20 44 44 H 1.09000 * 117.50262 * 214.97716 * 24 22 20 45 45 H 1.09009 * 117.50090 * 0.02562 * 24 22 20 46 46 H 1.09000 * 110.38860 * 263.79375 * 25 17 16 47 47 H 1.08993 * 110.39072 * 141.41000 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 7 5.4865 -2.6366 -0.0014 12 6 6.3163 -2.6378 1.2112 13 6 7.7291 -2.2076 0.7475 14 6 7.6962 -2.6051 -0.7318 15 6 8.5063 -1.6267 -1.5972 16 6 8.9145 -2.4976 -2.8073 17 7 8.8182 -3.9044 -2.3872 18 6 9.0755 -4.9750 -3.1644 19 8 8.9635 -6.0951 -2.7111 20 6 9.4978 -4.7831 -4.5813 21 8 9.6089 -3.6683 -5.0327 22 6 9.7862 -5.9801 -5.4504 23 6 11.0305 -5.9246 -6.3389 24 6 9.6387 -5.8066 -6.9633 25 6 8.3934 -3.9505 -0.9732 26 6 6.2481 -2.6415 -1.1147 27 8 5.8255 -2.6681 -2.2511 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6797 -0.8895 30 1 3.8746 -0.6808 0.8905 31 1 3.6579 -3.1514 0.8880 32 1 3.6585 -3.1495 -0.8920 33 1 5.9243 -1.9249 1.9368 34 1 6.3497 -3.6375 1.6441 35 1 7.8677 -1.1324 0.8608 36 1 8.5016 -2.7583 1.2842 37 1 7.8864 -0.7887 -1.9160 38 1 9.3854 -1.2720 -1.0590 39 1 8.2378 -2.3130 -3.6417 40 1 9.9388 -2.2678 -3.1005 41 1 9.5133 -6.9460 -5.0255 42 1 11.6403 -5.0222 -6.2953 43 1 11.5766 -6.8543 -6.4987 44 1 9.2692 -6.6586 -7.5339 45 1 9.3334 -4.8266 -7.3302 46 1 9.2598 -4.0519 -0.3195 47 1 7.6971 -4.7734 -0.8125 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270755037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:46 Heat of formation + Delta-G solvation = -86.616866 kcal Electronic energy + Delta-G solvation = -29310.573186 eV Core-core repulsion = 25265.789374 eV Total energy + Delta-G solvation = -4044.783812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 12.89 seconds Orbital eigenvalues (eV) -42.52185 -41.56222 -39.86382 -38.40230 -37.56862 -37.23745 -35.68633 -34.19810 -32.28791 -30.73240 -29.61267 -28.17334 -27.18748 -25.77734 -23.91216 -23.42154 -23.23979 -22.53953 -21.84286 -20.36727 -20.03474 -19.10947 -18.68918 -17.96874 -17.49220 -17.21891 -17.13369 -16.52283 -16.46550 -16.07430 -15.82387 -15.62323 -15.02892 -14.93699 -14.81990 -14.64460 -14.48763 -14.41916 -14.15089 -13.84070 -13.76748 -13.57195 -13.49095 -12.98053 -12.84387 -12.70983 -12.53200 -12.50045 -12.40156 -11.99731 -11.94562 -11.88239 -11.74099 -11.65009 -11.60058 -11.55317 -10.83408 -10.68751 -10.59183 -9.96054 -9.62559 -8.35968 -6.41608 -0.24670 1.28726 1.33560 1.36567 1.44619 1.46520 1.71978 2.07136 2.30418 2.70110 2.81691 2.98763 3.17314 3.21438 3.38563 3.55807 3.73534 3.79358 3.90389 3.90906 4.12083 4.14913 4.19602 4.27983 4.35183 4.45240 4.50975 4.56438 4.65838 4.68869 4.71458 4.74495 4.78887 4.84610 4.92292 4.94997 4.97633 5.08953 5.11325 5.12548 5.19001 5.25768 5.46749 5.69410 5.72467 6.11035 6.16969 6.22587 6.64801 6.64921 7.13637 7.23658 8.80472 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017352 B = 0.002729 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.251303 B =10258.915867 C =10765.368580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.008 3.992 3 Si 0.953 3.047 4 H -0.253 1.253 5 H -0.260 1.260 6 H -0.284 1.284 7 C -0.536 4.536 8 H 0.036 0.964 9 C -0.010 4.010 10 C 0.147 3.853 11 N -0.621 5.621 12 C 0.086 3.914 13 C -0.099 4.099 14 C -0.108 4.108 15 C -0.102 4.102 16 C 0.108 3.892 17 N -0.592 5.592 18 C 0.486 3.514 19 O -0.542 6.542 20 C 0.383 3.617 21 O -0.432 6.432 22 C -0.229 4.229 23 C -0.124 4.124 24 C -0.145 4.145 25 C 0.129 3.871 26 C 0.509 3.491 27 O -0.577 6.577 28 H 0.268 0.732 29 H -0.001 1.001 30 H 0.033 0.967 31 H 0.089 0.911 32 H 0.043 0.957 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.140 0.860 37 H 0.075 0.925 38 H 0.137 0.863 39 H 0.050 0.950 40 H 0.099 0.901 41 H 0.137 0.863 42 H 0.103 0.897 43 H 0.134 0.866 44 H 0.129 0.871 45 H 0.095 0.905 46 H 0.131 0.869 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.358 -7.658 -2.394 31.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.190 4.190 3 Si 0.776 3.224 4 H -0.177 1.177 5 H -0.185 1.185 6 H -0.209 1.209 7 C -0.574 4.574 8 H 0.054 0.946 9 C -0.049 4.049 10 C 0.025 3.975 11 N -0.353 5.353 12 C -0.036 4.036 13 C -0.137 4.137 14 C -0.112 4.112 15 C -0.140 4.140 16 C -0.014 4.014 17 N -0.326 5.326 18 C 0.272 3.728 19 O -0.421 6.421 20 C 0.255 3.745 21 O -0.303 6.303 22 C -0.249 4.249 23 C -0.160 4.160 24 C -0.182 4.182 25 C 0.008 3.992 26 C 0.297 3.703 27 O -0.457 6.457 28 H 0.077 0.923 29 H 0.017 0.983 30 H 0.051 0.949 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.126 0.874 36 H 0.158 0.842 37 H 0.094 0.906 38 H 0.155 0.845 39 H 0.069 0.931 40 H 0.117 0.883 41 H 0.155 0.845 42 H 0.121 0.879 43 H 0.153 0.847 44 H 0.147 0.853 45 H 0.114 0.886 46 H 0.149 0.851 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 29.904 -7.611 -3.006 31.003 hybrid contribution -1.301 0.553 -0.258 1.438 sum 28.602 -7.057 -3.263 29.640 Atomic orbital electron populations 1.70055 1.08191 1.28344 1.51999 1.25984 0.95655 1.03496 0.93835 0.85625 0.78920 0.78204 0.79667 1.17708 1.18462 1.20925 1.21283 0.91396 0.93521 1.51225 0.94557 1.19705 0.94285 0.94614 0.96272 1.21140 0.77219 0.97601 1.01550 1.48824 1.06368 1.71668 1.08418 1.22604 0.90736 1.03766 0.86470 1.22622 0.96605 1.04904 0.89529 1.21600 0.91161 0.98015 1.00448 1.22569 1.00962 0.96178 0.94278 1.22311 1.02545 0.78581 0.97981 1.48716 1.63677 1.07190 1.13018 1.20841 0.79559 0.83998 0.88390 1.90718 1.52693 1.23808 1.74866 1.23962 0.72736 0.90501 0.87311 1.90408 1.37680 1.27626 1.74592 1.22523 1.09830 0.98633 0.93896 1.23172 0.89625 1.05633 0.97610 1.23170 1.00291 1.04911 0.89832 1.22250 0.99898 0.95381 0.81708 1.21029 0.90058 0.75021 0.84212 1.90677 1.79820 1.52138 1.23036 0.92273 0.98296 0.94916 0.89288 0.93843 0.89016 0.88932 0.87384 0.84224 0.90633 0.84452 0.93115 0.88338 0.84503 0.87895 0.84745 0.85312 0.88618 0.85110 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.95 13.96 21.45 0.30 -59.65 16 2 C 0.01 0.47 5.47 84.66 0.46 0.93 16 3 Si 0.95 45.05 27.47 68.60 1.88 46.93 16 4 H -0.25 -10.96 7.11 99.48 0.71 -10.25 16 5 H -0.26 -11.97 6.54 99.48 0.65 -11.31 16 6 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 7 C -0.54 -31.59 9.66 25.60 0.25 -31.34 16 8 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 9 C -0.01 -0.50 4.36 29.85 0.13 -0.37 16 10 C 0.15 6.06 5.89 86.38 0.51 6.57 16 11 N -0.62 -20.20 2.95 -818.17 -2.41 -22.62 16 12 C 0.09 1.64 7.37 86.91 0.64 2.28 16 13 C -0.10 -1.19 6.26 31.28 0.20 -0.99 16 14 C -0.11 -2.24 0.68 -52.74 -0.04 -2.28 16 15 C -0.10 -1.80 5.81 31.37 0.18 -1.62 16 16 C 0.11 2.39 5.24 86.80 0.46 2.85 16 17 N -0.59 -14.66 3.34 -815.16 -2.72 -17.38 16 18 C 0.49 13.33 7.89 87.16 0.69 14.02 16 19 O -0.54 -17.09 16.67 -3.27 -0.05 -17.15 16 20 C 0.38 9.14 6.93 28.60 0.20 9.34 16 21 O -0.43 -11.06 14.18 -1.53 -0.02 -11.09 16 22 C -0.23 -4.13 5.95 -11.54 -0.07 -4.20 16 23 C -0.12 -1.44 10.14 30.59 0.31 -1.13 16 24 C -0.15 -2.03 10.05 30.59 0.31 -1.72 16 25 C 0.13 2.62 5.88 86.30 0.51 3.13 16 26 C 0.51 17.47 6.77 87.37 0.59 18.07 16 27 O -0.58 -26.14 17.26 -3.02 -0.05 -26.20 16 28 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 29 H 0.00 -0.07 7.20 -2.38 -0.02 -0.09 16 30 H 0.03 1.45 7.57 -2.39 -0.02 1.43 16 31 H 0.09 3.33 8.14 -2.38 -0.02 3.31 16 32 H 0.04 2.04 7.93 -2.39 -0.02 2.02 16 33 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.39 16 35 H 0.11 1.03 7.96 -2.39 -0.02 1.01 16 36 H 0.14 0.51 7.63 -2.39 -0.02 0.49 16 37 H 0.07 1.63 8.01 -2.39 -0.02 1.61 16 38 H 0.14 1.16 8.04 -2.39 -0.02 1.14 16 39 H 0.05 1.48 7.59 -2.38 -0.02 1.46 16 40 H 0.10 1.75 7.69 -2.39 -0.02 1.73 16 41 H 0.14 2.48 7.72 -2.39 -0.02 2.46 16 42 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.13 0.89 8.14 -2.38 -0.02 0.87 16 44 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.10 1.56 7.89 -2.38 -0.02 1.54 16 46 H 0.13 1.56 7.75 -2.39 -0.02 1.54 16 47 H 0.06 1.58 7.93 -2.39 -0.02 1.56 16 Total: -1.00 -85.94 386.99 3.15 -82.78 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.91 Total: 10.83 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: 5.32 Total: 13.53 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -4.84 Total: -99.65 kcal Atomic # 8 Polarization: -54.30 SS G_CDS: -0.13 Total: -54.43 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.88 Total: 46.93 kcal Total: -85.94 3.15 -82.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270755037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.835 kcal (2) G-P(sol) polarization free energy of solvation -85.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.89 seconds