Wall clock time and date at job start Tue Mar 31 2020 21:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.46847 * 124.37228 * 269.72579 * 11 10 9 13 13 C 1.54815 * 105.41480 * 162.99440 * 12 11 10 14 14 C 1.53891 * 101.51651 * 25.12818 * 13 12 11 15 15 C 1.53612 * 110.33741 * 216.05930 * 14 13 12 16 16 C 1.55334 * 102.71725 * 216.81917 * 15 14 13 17 17 C 1.54979 * 101.66658 * 34.89498 * 16 15 14 18 18 N 1.46233 * 110.90939 * 96.30612 * 14 13 12 19 19 C 1.34775 * 125.81208 * 299.84318 * 18 14 13 20 20 O 1.21371 * 120.00384 * 359.97438 * 19 18 14 21 21 C 1.49091 * 120.00143 * 180.02562 * 19 18 14 22 22 O 1.20787 * 119.99469 * 359.97438 * 21 19 18 23 23 C 1.50692 * 120.00600 * 180.02562 * 21 19 18 24 24 C 1.53000 * 117.50286 * 223.62166 * 23 21 19 25 25 C 1.52994 * 59.99984 * 252.50786 * 24 23 21 26 26 C 1.34661 * 124.36564 * 90.02999 * 11 10 9 27 27 O 1.21273 * 125.07438 * 0.86074 * 26 11 10 28 28 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 30 30 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 31 31 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 32 32 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 33 33 H 1.08997 * 110.24085 * 282.13744 * 12 11 10 34 34 H 1.09002 * 110.23645 * 44.11872 * 12 11 10 35 35 H 1.09003 * 111.22870 * 266.99298 * 13 12 11 36 36 H 1.09007 * 110.85141 * 143.09587 * 13 12 11 37 37 H 1.08993 * 110.76391 * 335.12897 * 15 14 13 38 38 H 1.09004 * 110.75633 * 98.51623 * 15 14 13 39 39 H 1.08994 * 110.98741 * 276.79660 * 16 15 14 40 40 H 1.09004 * 111.01640 * 153.00327 * 16 15 14 41 41 H 1.08995 * 110.35710 * 204.55240 * 17 16 15 42 42 H 1.08996 * 110.45614 * 82.29208 * 17 16 15 43 43 H 1.09008 * 115.54830 * 9.32587 * 23 21 19 44 44 H 1.09004 * 117.49640 * 359.97438 * 24 23 21 45 45 H 1.09000 * 117.49897 * 145.01652 * 24 23 21 46 46 H 1.09010 * 117.49721 * 252.51213 * 25 24 23 47 47 H 1.08994 * 117.50127 * 107.48942 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 1.1038 -5.6513 1.2135 13 6 0.0185 -6.6535 0.7502 14 6 0.3863 -6.8409 -0.7323 15 6 -0.8838 -7.0001 -1.5815 16 6 -0.4542 -8.0459 -2.6467 17 6 0.4974 -8.9546 -1.8277 18 7 1.2100 -8.0348 -0.9187 19 6 2.4144 -8.2576 -0.3565 20 8 2.9047 -7.4249 0.3779 21 6 3.1451 -9.5264 -0.6376 22 8 2.6573 -10.3548 -1.3688 23 6 4.4915 -9.7759 -0.0086 24 6 5.5897 -10.3611 -0.8987 25 6 4.9283 -11.2310 0.1720 26 6 1.1329 -5.5897 -1.1101 27 8 1.3589 -5.2290 -2.2457 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6241 -2.5568 0.8902 31 1 2.8720 -3.6043 -0.8894 32 1 2.8720 -3.6043 0.8905 33 1 1.9538 -6.1828 1.6413 34 1 0.6870 -4.9564 1.9426 35 1 -0.9803 -6.2297 0.8543 36 1 0.1009 -7.5940 1.2951 37 1 -1.7075 -7.3800 -0.9772 38 1 -1.1534 -6.0556 -2.0541 39 1 0.0753 -7.5685 -3.4711 40 1 -1.3138 -8.6086 -3.0110 41 1 1.2034 -9.4575 -2.4885 42 1 -0.0732 -9.6865 -1.2560 43 1 4.7920 -9.0614 0.7579 44 1 5.3382 -10.5661 -1.9393 45 1 6.6129 -10.0315 -0.7181 46 1 5.5164 -11.4738 1.0572 47 1 4.2418 -12.0079 -0.1641 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270755040.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:50 Heat of formation + Delta-G solvation = -56.198519 kcal Electronic energy + Delta-G solvation = -30125.624800 eV Core-core repulsion = 26082.160026 eV Total energy + Delta-G solvation = -4043.464774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.62981 -40.30931 -38.39269 -37.39185 -36.52616 -35.87482 -33.59799 -32.06286 -31.70892 -29.14774 -27.79485 -27.34413 -25.09880 -24.29204 -23.00577 -22.85920 -22.05939 -21.62280 -20.40785 -19.49600 -18.67036 -17.60469 -17.06299 -16.78579 -16.40057 -15.78020 -15.55580 -15.22051 -15.05856 -14.80600 -14.54188 -14.38022 -14.03058 -13.78382 -13.44800 -13.19184 -13.12952 -12.87710 -12.70354 -12.52654 -12.39088 -12.05830 -11.98955 -11.77823 -11.61591 -11.27746 -11.23201 -11.04219 -10.96172 -10.95088 -10.89435 -10.79524 -10.63481 -9.99498 -9.83985 -9.65662 -9.51672 -9.17469 -8.65547 -8.35051 -7.86698 -6.00177 -4.03064 0.66268 2.13178 2.65896 3.12584 3.32379 3.39291 3.43720 3.47349 3.55691 3.76541 4.25275 4.27425 4.37874 4.44076 4.47897 4.48546 4.50007 4.76585 4.80638 4.89884 5.03247 5.18342 5.18761 5.33463 5.36106 5.39354 5.46715 5.53818 5.59959 5.65099 5.70235 5.76149 5.80804 5.91609 6.05513 6.09776 6.14540 6.19580 6.57842 6.64877 6.86546 7.06499 7.14583 7.56463 7.70786 7.73718 7.91364 8.00236 8.36974 8.71008 9.03762 9.60764 11.11356 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015880 B = 0.003141 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.756464 B = 8912.995612 C = 9933.549168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.013 3.987 10 C 0.131 3.869 11 N -0.590 5.590 12 C 0.100 3.900 13 C -0.136 4.136 14 C 0.127 3.873 15 C -0.111 4.111 16 C -0.134 4.134 17 C 0.098 3.902 18 N -0.573 5.573 19 C 0.488 3.512 20 O -0.489 6.489 21 C 0.389 3.611 22 O -0.422 6.422 23 C -0.209 4.209 24 C -0.144 4.144 25 C -0.147 4.147 26 C 0.515 3.485 27 O -0.529 6.529 28 H 0.260 0.740 29 H 0.020 0.980 30 H 0.017 0.983 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.140 0.860 44 H 0.103 0.897 45 H 0.110 0.890 46 H 0.108 0.892 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.175 -25.710 1.150 25.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.025 4.025 10 C 0.011 3.989 11 N -0.321 5.321 12 C -0.023 4.023 13 C -0.174 4.174 14 C 0.038 3.962 15 C -0.149 4.149 16 C -0.172 4.172 17 C -0.024 4.024 18 N -0.309 5.309 19 C 0.273 3.727 20 O -0.363 6.363 21 C 0.260 3.740 22 O -0.293 6.293 23 C -0.228 4.228 24 C -0.181 4.181 25 C -0.184 4.184 26 C 0.299 3.701 27 O -0.405 6.405 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.113 0.887 42 H 0.094 0.906 43 H 0.158 0.842 44 H 0.121 0.879 45 H 0.128 0.872 46 H 0.127 0.873 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.302 -25.324 0.610 25.436 hybrid contribution 0.326 1.177 0.171 1.233 sum 2.628 -24.147 0.782 24.303 Atomic orbital electron populations 1.69981 1.06090 1.26530 1.50645 1.24998 0.94856 0.99290 0.95156 0.86497 0.80138 0.83586 0.77555 1.19646 1.20970 1.21000 1.21137 0.93114 0.90672 1.50941 0.92427 1.19410 0.94422 0.91039 0.97639 1.21777 0.95012 0.80730 1.01418 1.48402 1.54919 1.22756 1.06023 1.22268 0.97509 0.94120 0.88431 1.22968 1.00217 1.00660 0.93571 1.21338 0.91899 0.85589 0.97354 1.22518 0.94255 1.01512 0.96603 1.22902 0.99361 0.96724 0.98174 1.22737 0.95553 0.92023 0.92113 1.48292 1.17512 1.18538 1.46529 1.20482 0.81077 0.89071 0.82039 1.90774 1.65254 1.45270 1.34989 1.23796 0.87106 0.84882 0.78188 1.90369 1.66474 1.44592 1.27875 1.22506 0.93963 1.00379 1.05974 1.23020 0.96598 1.01549 0.96923 1.23033 1.02985 0.90949 1.01406 1.20286 0.80047 0.84623 0.85186 1.90677 1.57664 1.71280 1.20891 0.93031 0.96190 0.96424 0.91400 0.91560 0.89327 0.90645 0.88801 0.89513 0.89468 0.88785 0.89701 0.89311 0.88704 0.90596 0.84219 0.87902 0.87183 0.87333 0.87682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.33 13.29 55.43 0.74 -26.60 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.35 5.30 -27.88 -0.15 0.20 16 10 C 0.13 2.99 5.88 -4.04 -0.02 2.97 16 11 N -0.59 -11.82 2.69 -172.39 -0.46 -12.28 16 12 C 0.10 1.59 6.39 -2.90 -0.02 1.57 16 13 C -0.14 -1.73 5.96 -25.31 -0.15 -1.88 16 14 C 0.13 1.84 0.85 -132.42 -0.11 1.73 16 15 C -0.11 -1.31 5.86 -25.18 -0.15 -1.46 16 16 C -0.13 -1.36 7.09 -24.45 -0.17 -1.53 16 17 C 0.10 1.01 6.08 -2.37 -0.01 1.00 16 18 N -0.57 -7.62 2.85 -158.03 -0.45 -8.07 16 19 C 0.49 6.74 7.50 -11.75 -0.09 6.66 16 20 O -0.49 -7.81 12.43 5.48 0.07 -7.75 16 21 C 0.39 4.39 6.94 -29.81 -0.21 4.19 16 22 O -0.42 -4.86 13.86 5.98 0.08 -4.77 16 23 C -0.21 -1.89 5.95 -91.78 -0.55 -2.44 16 24 C -0.14 -1.05 10.14 -26.73 -0.27 -1.32 16 25 C -0.15 -0.98 10.05 -26.74 -0.27 -1.25 16 26 C 0.51 10.31 6.20 -11.12 -0.07 10.24 16 27 O -0.53 -12.53 17.42 5.56 0.10 -12.43 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 1.65 7.93 -51.93 -0.41 1.24 16 32 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 33 H 0.09 1.40 5.90 -51.93 -0.31 1.09 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.09 1.07 7.83 -51.93 -0.41 0.66 16 36 H 0.09 0.94 8.07 -51.93 -0.42 0.52 16 37 H 0.09 0.78 7.81 -51.93 -0.41 0.37 16 38 H 0.09 1.29 7.79 -51.93 -0.40 0.89 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.01 6.19 -51.93 -0.32 0.69 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.14 1.29 7.72 -51.92 -0.40 0.88 16 44 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.11 0.53 8.14 -51.92 -0.42 0.11 16 47 H 0.10 0.72 7.89 -51.93 -0.41 0.31 16 LS Contribution 382.75 15.07 5.77 5.77 Total: -1.00 -35.63 382.75 -9.09 -44.71 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -7.25 Total: -0.48 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -2.65 Total: 4.84 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: -0.18 Total: -46.95 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: 0.25 Total: -24.95 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.63 -9.09 -44.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270755040.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.484 kcal (2) G-P(sol) polarization free energy of solvation -35.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds