Wall clock time and date at job start Tue Mar 31 2020 21:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.46847 * 124.37228 * 269.72579 * 11 10 9 13 13 C 1.54815 * 105.41480 * 162.99440 * 12 11 10 14 14 C 1.53891 * 101.51651 * 25.12818 * 13 12 11 15 15 C 1.53612 * 110.33741 * 216.05930 * 14 13 12 16 16 C 1.55334 * 102.71725 * 216.81917 * 15 14 13 17 17 C 1.54979 * 101.66658 * 34.89498 * 16 15 14 18 18 N 1.46233 * 110.90939 * 96.30612 * 14 13 12 19 19 C 1.34775 * 125.81208 * 299.84318 * 18 14 13 20 20 O 1.21371 * 120.00384 * 359.97438 * 19 18 14 21 21 C 1.49091 * 120.00143 * 180.02562 * 19 18 14 22 22 O 1.20787 * 119.99469 * 359.97438 * 21 19 18 23 23 C 1.50692 * 120.00600 * 180.02562 * 21 19 18 24 24 C 1.53000 * 117.50286 * 223.62166 * 23 21 19 25 25 C 1.52994 * 59.99984 * 252.50786 * 24 23 21 26 26 C 1.34661 * 124.36564 * 90.02999 * 11 10 9 27 27 O 1.21273 * 125.07438 * 0.86074 * 26 11 10 28 28 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 30 30 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 31 31 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 32 32 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 33 33 H 1.08997 * 110.24085 * 282.13744 * 12 11 10 34 34 H 1.09002 * 110.23645 * 44.11872 * 12 11 10 35 35 H 1.09003 * 111.22870 * 266.99298 * 13 12 11 36 36 H 1.09007 * 110.85141 * 143.09587 * 13 12 11 37 37 H 1.08993 * 110.76391 * 335.12897 * 15 14 13 38 38 H 1.09004 * 110.75633 * 98.51623 * 15 14 13 39 39 H 1.08994 * 110.98741 * 276.79660 * 16 15 14 40 40 H 1.09004 * 111.01640 * 153.00327 * 16 15 14 41 41 H 1.08995 * 110.35710 * 204.55240 * 17 16 15 42 42 H 1.08996 * 110.45614 * 82.29208 * 17 16 15 43 43 H 1.09008 * 115.54830 * 9.32587 * 23 21 19 44 44 H 1.09004 * 117.49640 * 359.97438 * 24 23 21 45 45 H 1.09000 * 117.49897 * 145.01652 * 24 23 21 46 46 H 1.09010 * 117.49721 * 252.51213 * 25 24 23 47 47 H 1.08994 * 117.50127 * 107.48942 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 1.1038 -5.6513 1.2135 13 6 0.0185 -6.6535 0.7502 14 6 0.3863 -6.8409 -0.7323 15 6 -0.8838 -7.0001 -1.5815 16 6 -0.4542 -8.0459 -2.6467 17 6 0.4974 -8.9546 -1.8277 18 7 1.2100 -8.0348 -0.9187 19 6 2.4144 -8.2576 -0.3565 20 8 2.9047 -7.4249 0.3779 21 6 3.1451 -9.5264 -0.6376 22 8 2.6573 -10.3548 -1.3688 23 6 4.4915 -9.7759 -0.0086 24 6 5.5897 -10.3611 -0.8987 25 6 4.9283 -11.2310 0.1720 26 6 1.1329 -5.5897 -1.1101 27 8 1.3589 -5.2290 -2.2457 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6241 -2.5568 0.8902 31 1 2.8720 -3.6043 -0.8894 32 1 2.8720 -3.6043 0.8905 33 1 1.9538 -6.1828 1.6413 34 1 0.6870 -4.9564 1.9426 35 1 -0.9803 -6.2297 0.8543 36 1 0.1009 -7.5940 1.2951 37 1 -1.7075 -7.3800 -0.9772 38 1 -1.1534 -6.0556 -2.0541 39 1 0.0753 -7.5685 -3.4711 40 1 -1.3138 -8.6086 -3.0110 41 1 1.2034 -9.4575 -2.4885 42 1 -0.0732 -9.6865 -1.2560 43 1 4.7920 -9.0614 0.7579 44 1 5.3382 -10.5661 -1.9393 45 1 6.6129 -10.0315 -0.7181 46 1 5.5164 -11.4738 1.0572 47 1 4.2418 -12.0079 -0.1641 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270755040.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:37 Heat of formation + Delta-G solvation = -78.976258 kcal Electronic energy + Delta-G solvation = -30126.612517 eV Core-core repulsion = 26082.160026 eV Total energy + Delta-G solvation = -4044.452491 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 12.75 seconds Orbital eigenvalues (eV) -42.76681 -41.32856 -39.58265 -38.50456 -37.50818 -37.22007 -35.61307 -33.66171 -32.85281 -30.88315 -29.04071 -28.20550 -27.03750 -25.39912 -24.06824 -23.67518 -23.39548 -22.76123 -21.74320 -20.58786 -19.92992 -18.75881 -18.58361 -18.10801 -17.65907 -17.13039 -16.84672 -16.62552 -16.29689 -15.97853 -15.79304 -15.63765 -15.07209 -14.99097 -14.74618 -14.50235 -14.40702 -14.33767 -14.08339 -13.76166 -13.65953 -13.43568 -13.38720 -12.90987 -12.71566 -12.65843 -12.49030 -12.48050 -12.21040 -12.07225 -12.00892 -11.87298 -11.78372 -11.61340 -11.57691 -11.43654 -11.02251 -10.63581 -10.50560 -9.87799 -9.55389 -8.26578 -6.39573 -0.24801 1.02921 1.36859 1.38379 1.51862 1.69195 1.76038 2.08836 2.39180 2.75016 2.84906 3.06521 3.16559 3.27360 3.47033 3.56777 3.69481 3.75158 3.92807 3.93104 4.07893 4.14930 4.16805 4.22602 4.40881 4.52988 4.59172 4.66787 4.68066 4.69235 4.79509 4.82004 4.83361 4.87232 4.94446 4.98017 5.05321 5.07981 5.15030 5.22805 5.26789 5.40867 5.54272 5.74661 5.77672 6.10898 6.15031 6.23637 6.69865 6.74238 7.10982 7.29971 8.85855 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015880 B = 0.003141 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.756464 B = 8912.995612 C = 9933.549168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.972 3.028 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.547 4.547 8 H 0.063 0.937 9 C 0.030 3.970 10 C 0.145 3.855 11 N -0.599 5.599 12 C 0.094 3.906 13 C -0.122 4.122 14 C 0.130 3.870 15 C -0.110 4.110 16 C -0.127 4.127 17 C 0.098 3.902 18 N -0.575 5.575 19 C 0.478 3.522 20 O -0.519 6.519 21 C 0.394 3.606 22 O -0.425 6.425 23 C -0.228 4.228 24 C -0.142 4.142 25 C -0.126 4.126 26 C 0.497 3.503 27 O -0.580 6.580 28 H 0.266 0.734 29 H -0.024 1.024 30 H 0.003 0.997 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.129 0.871 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.128 0.872 41 H 0.091 0.909 42 H 0.109 0.891 43 H 0.135 0.865 44 H 0.098 0.902 45 H 0.125 0.875 46 H 0.131 0.869 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.194 -27.742 2.290 27.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.795 3.205 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.196 1.196 7 C -0.586 4.586 8 H 0.081 0.919 9 C -0.008 4.008 10 C 0.023 3.977 11 N -0.330 5.330 12 C -0.028 4.028 13 C -0.160 4.160 14 C 0.041 3.959 15 C -0.148 4.148 16 C -0.165 4.165 17 C -0.023 4.023 18 N -0.311 5.311 19 C 0.264 3.736 20 O -0.395 6.395 21 C 0.266 3.734 22 O -0.297 6.297 23 C -0.247 4.247 24 C -0.179 4.179 25 C -0.163 4.163 26 C 0.284 3.716 27 O -0.461 6.461 28 H 0.075 0.925 29 H -0.006 1.006 30 H 0.022 0.978 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.147 0.853 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.146 0.854 41 H 0.109 0.891 42 H 0.127 0.873 43 H 0.153 0.847 44 H 0.116 0.884 45 H 0.144 0.856 46 H 0.149 0.851 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.307 -27.409 1.767 27.563 hybrid contribution 0.331 1.809 -0.222 1.853 sum 2.638 -25.600 1.545 25.782 Atomic orbital electron populations 1.70108 1.07876 1.27957 1.51010 1.26006 0.95847 1.03504 0.94223 0.85305 0.78993 0.78193 0.77978 1.18546 1.20478 1.19629 1.21539 0.93625 0.91842 1.51564 0.91924 1.19166 0.94325 0.92677 0.94679 1.21318 0.94060 0.81296 1.00991 1.48529 1.54554 1.21873 1.08031 1.22505 0.98839 0.94591 0.86860 1.23036 0.99815 1.01039 0.92116 1.21333 0.92190 0.83398 0.98975 1.22614 0.94008 1.01014 0.97161 1.22913 1.00404 0.96362 0.96830 1.22955 0.95460 0.91885 0.91985 1.48532 1.17593 1.18281 1.46695 1.21138 0.81096 0.89805 0.81581 1.90745 1.65917 1.46421 1.36409 1.23763 0.87676 0.83698 0.78251 1.90362 1.66802 1.44303 1.28215 1.22499 0.93214 1.02237 1.06790 1.23161 0.96764 1.01222 0.96791 1.23172 1.02186 0.89132 1.01761 1.21419 0.79590 0.86308 0.84319 1.90623 1.59586 1.72985 1.22858 0.92550 1.00551 0.97823 0.93652 0.89963 0.89052 0.90418 0.86910 0.86567 0.85304 0.91499 0.92648 0.85392 0.89113 0.87347 0.84691 0.88378 0.85643 0.85103 0.87567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.20 13.29 21.45 0.28 -57.91 16 2 C 0.00 0.15 5.46 84.66 0.46 0.61 16 3 Si 0.97 45.65 29.54 68.60 2.03 47.68 16 4 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.55 -32.83 9.11 25.60 0.23 -32.60 16 8 H 0.06 3.60 7.74 -2.91 -0.02 3.58 16 9 C 0.03 1.69 5.30 29.85 0.16 1.85 16 10 C 0.15 7.01 5.88 86.38 0.51 7.52 16 11 N -0.60 -25.06 2.69 -817.77 -2.20 -27.26 16 12 C 0.09 2.97 6.39 86.93 0.56 3.53 16 13 C -0.12 -2.88 5.96 31.51 0.19 -2.70 16 14 C 0.13 3.71 0.85 3.36 0.00 3.71 16 15 C -0.11 -2.45 5.86 31.60 0.19 -2.27 16 16 C -0.13 -2.38 7.09 32.07 0.23 -2.15 16 17 C 0.10 1.81 6.08 86.84 0.53 2.34 16 18 N -0.58 -14.73 2.85 -772.24 -2.20 -16.93 16 19 C 0.48 13.00 7.50 87.16 0.65 13.65 16 20 O -0.52 -16.74 12.43 -3.31 -0.04 -16.78 16 21 C 0.39 8.54 6.94 28.60 0.20 8.74 16 22 O -0.43 -9.15 13.86 -1.53 -0.02 -9.17 16 23 C -0.23 -3.87 5.95 -11.54 -0.07 -3.94 16 24 C -0.14 -1.85 10.14 30.59 0.31 -1.54 16 25 C -0.13 -1.38 10.05 30.59 0.31 -1.07 16 26 C 0.50 20.84 6.20 87.62 0.54 21.39 16 27 O -0.58 -29.49 17.42 -3.01 -0.05 -29.54 16 28 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 29 H -0.02 -1.56 8.14 -2.39 -0.02 -1.58 16 30 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.04 2.36 7.93 -2.39 -0.02 2.34 16 32 H 0.08 3.65 8.14 -2.39 -0.02 3.63 16 33 H 0.09 2.87 5.90 -2.39 -0.01 2.86 16 34 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.11 2.26 7.83 -2.39 -0.02 2.24 16 36 H 0.12 2.11 8.07 -2.38 -0.02 2.10 16 37 H 0.13 1.81 7.81 -2.39 -0.02 1.79 16 38 H 0.07 1.88 7.79 -2.39 -0.02 1.86 16 39 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.13 1.39 8.14 -2.38 -0.02 1.37 16 41 H 0.09 1.79 6.19 -2.39 -0.01 1.78 16 42 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.14 2.42 7.72 -2.38 -0.02 2.40 16 44 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 45 H 0.13 1.22 8.14 -2.39 -0.02 1.21 16 46 H 0.13 0.86 8.14 -2.38 -0.02 0.84 16 47 H 0.11 1.18 7.89 -2.39 -0.02 1.16 16 Total: -1.00 -82.34 382.75 3.76 -78.58 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.97 Total: 14.25 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: 4.99 Total: 17.08 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -4.12 Total: -102.10 kcal Atomic # 8 Polarization: -55.37 SS G_CDS: -0.11 Total: -55.49 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -82.34 3.76 -78.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270755040.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.394 kcal (2) G-P(sol) polarization free energy of solvation -82.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.75 seconds