Wall clock time and date at job start Tue Mar 31 2020 21:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00361 * 2 1 4 4 H 1.48493 * 109.47032 * 270.00389 * 3 2 1 5 5 H 1.48501 * 109.46331 * 30.00225 * 3 2 1 6 6 H 1.48497 * 109.46872 * 149.99967 * 3 2 1 7 7 C 1.37887 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99625 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99910 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47244 * 180.02562 * 9 7 2 11 11 N 1.46493 * 109.47396 * 180.02562 * 10 9 7 12 12 C 1.46850 * 124.37054 * 90.00363 * 11 10 9 13 13 C 1.54635 * 105.50300 * 163.10232 * 12 11 10 14 14 C 1.53902 * 101.59385 * 24.77831 * 13 12 11 15 15 C 1.53630 * 110.19284 * 95.58785 * 14 13 12 16 16 C 1.55327 * 102.80452 * 99.94537 * 15 14 13 17 17 C 1.54977 * 101.66838 * 34.67233 * 16 15 14 18 18 N 1.46236 * 110.88115 * 215.21857 * 14 13 12 19 19 C 1.34774 * 125.81170 * 57.73777 * 18 14 13 20 20 O 1.21373 * 119.99828 * 359.72013 * 19 18 14 21 21 C 1.49087 * 119.99862 * 179.71647 * 19 18 14 22 22 O 1.20774 * 120.00229 * 0.02562 * 21 19 18 23 23 C 1.50706 * 119.99695 * 180.02562 * 21 19 18 24 24 C 1.53001 * 117.49756 * 223.62173 * 23 21 19 25 25 C 1.52999 * 59.99986 * 252.51526 * 24 23 21 26 26 C 1.34662 * 124.36785 * 269.97607 * 11 10 9 27 27 O 1.21275 * 125.07276 * 0.89199 * 26 11 10 28 28 H 0.96993 * 119.99603 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47298 * 60.00492 * 9 7 2 30 30 H 1.09002 * 109.47452 * 300.00565 * 9 7 2 31 31 H 1.09003 * 109.46778 * 59.99920 * 10 9 7 32 32 H 1.09002 * 109.47150 * 300.00496 * 10 9 7 33 33 H 1.08995 * 110.24114 * 44.08399 * 12 11 10 34 34 H 1.09003 * 110.23620 * 282.10371 * 12 11 10 35 35 H 1.09002 * 110.99999 * 266.70191 * 13 12 11 36 36 H 1.09006 * 111.03750 * 142.87566 * 13 12 11 37 37 H 1.09003 * 110.90995 * 341.52237 * 15 14 13 38 38 H 1.08995 * 110.68461 * 218.26824 * 15 14 13 39 39 H 1.08997 * 110.98842 * 276.57140 * 16 15 14 40 40 H 1.09004 * 110.98514 * 152.76685 * 16 15 14 41 41 H 1.09003 * 110.35886 * 204.55714 * 17 16 15 42 42 H 1.08996 * 110.45364 * 82.29430 * 17 16 15 43 43 H 1.08996 * 115.55128 * 9.33638 * 23 21 19 44 44 H 1.09004 * 117.49834 * 0.02562 * 24 23 21 45 45 H 1.08997 * 117.49999 * 145.02096 * 24 23 21 46 46 H 1.09004 * 117.50109 * 252.51157 * 25 24 23 47 47 H 1.08998 * 117.52032 * 107.48340 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 6 1.0986 -5.6484 -1.2136 13 6 0.7684 -7.0863 -0.7504 14 6 0.4224 -6.8618 0.7323 15 6 -1.0973 -6.7192 0.9065 16 6 -1.5212 -8.1299 1.3994 17 6 -0.3007 -8.5405 2.2616 18 7 0.8691 -7.9901 1.5484 19 6 2.1341 -8.4461 1.6387 20 8 3.0188 -7.9111 1.0028 21 6 2.4468 -9.6075 2.5196 22 8 1.5664 -10.1400 3.1521 23 6 3.8615 -10.1170 2.6209 24 6 4.0708 -11.6322 2.5867 25 6 4.2535 -10.8641 3.8973 26 6 1.1326 -5.5897 1.1101 27 8 1.3321 -5.2138 2.2457 28 1 -0.4849 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8896 31 1 2.8718 -3.6044 0.8895 32 1 2.8719 -3.6044 -0.8905 33 1 1.9118 -5.6633 -1.9392 34 1 0.2148 -5.1793 -1.6461 35 1 1.6351 -7.7391 -0.8548 36 1 -0.0870 -7.4862 -1.2950 37 1 -1.5771 -6.4813 -0.0429 38 1 -1.3297 -5.9623 1.6555 39 1 -1.6541 -8.8130 0.5604 40 1 -2.4264 -8.0764 2.0044 41 1 -0.2295 -9.6264 2.3254 42 1 -0.3756 -8.1068 3.2588 43 1 4.6208 -9.4929 2.1498 44 1 3.1853 -12.2605 2.4905 45 1 4.9679 -12.0053 2.0927 46 1 5.2708 -10.7319 4.2656 47 1 3.4883 -10.9868 4.6638 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270755042.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:31 Heat of formation + Delta-G solvation = -59.691898 kcal Electronic energy + Delta-G solvation = -29871.057177 eV Core-core repulsion = 25827.440919 eV Total energy + Delta-G solvation = -4043.616258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 9.84 seconds Orbital eigenvalues (eV) -41.58853 -40.33423 -38.49232 -37.38709 -36.53391 -35.93765 -33.64368 -32.06945 -31.71107 -29.12801 -27.90323 -27.31228 -25.14036 -24.32966 -23.07384 -22.85994 -22.16773 -21.60480 -20.35476 -19.57356 -18.68401 -17.58699 -17.06650 -16.54756 -16.42750 -15.84569 -15.69059 -15.34962 -15.03475 -14.87062 -14.59101 -14.42016 -14.04211 -13.69433 -13.56008 -13.24506 -13.00178 -12.90166 -12.70697 -12.60546 -12.48282 -11.98164 -11.95532 -11.79543 -11.75667 -11.44235 -11.29995 -11.23527 -11.02038 -10.94750 -10.93388 -10.75716 -10.65326 -10.00555 -9.83810 -9.67333 -9.55369 -9.20715 -8.63186 -8.36201 -7.98840 -6.01622 -4.04637 0.68897 2.20172 2.69883 3.03584 3.32230 3.38028 3.41587 3.47333 3.51053 3.73242 4.23753 4.27871 4.36677 4.38563 4.46686 4.49054 4.52265 4.72928 4.77228 4.84985 4.98368 5.04748 5.18064 5.30948 5.34707 5.40125 5.49130 5.56854 5.59070 5.59417 5.66400 5.70401 5.74027 5.78564 5.86048 5.96789 6.09062 6.16636 6.51945 6.65398 6.82710 7.00859 7.15713 7.51069 7.67708 7.72647 7.86330 7.98337 8.35032 8.66346 9.01885 9.59246 11.09916 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017318 B = 0.002920 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.414733 B = 9586.764623 C =10371.894712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.012 3.988 10 C 0.130 3.870 11 N -0.602 5.602 12 C 0.106 3.894 13 C -0.136 4.136 14 C 0.127 3.873 15 C -0.113 4.113 16 C -0.130 4.130 17 C 0.095 3.905 18 N -0.571 5.571 19 C 0.494 3.506 20 O -0.497 6.497 21 C 0.389 3.611 22 O -0.422 6.422 23 C -0.209 4.209 24 C -0.144 4.144 25 C -0.147 4.147 26 C 0.520 3.480 27 O -0.524 6.524 28 H 0.261 0.739 29 H 0.018 0.982 30 H 0.020 0.980 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.139 0.861 44 H 0.102 0.898 45 H 0.109 0.891 46 H 0.109 0.891 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.182 -25.897 0.820 25.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.025 4.025 10 C 0.010 3.990 11 N -0.334 5.334 12 C -0.018 4.018 13 C -0.175 4.175 14 C 0.039 3.961 15 C -0.151 4.151 16 C -0.168 4.168 17 C -0.027 4.027 18 N -0.306 5.306 19 C 0.279 3.721 20 O -0.372 6.372 21 C 0.261 3.739 22 O -0.292 6.292 23 C -0.229 4.229 24 C -0.181 4.181 25 C -0.184 4.184 26 C 0.304 3.696 27 O -0.400 6.400 28 H 0.070 0.930 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.095 0.905 43 H 0.157 0.843 44 H 0.121 0.879 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.288 -25.525 1.434 25.567 hybrid contribution 0.439 1.253 -0.140 1.335 sum 0.728 -24.272 1.294 24.317 Atomic orbital electron populations 1.69970 1.06100 1.26673 1.50498 1.25000 0.94860 0.99297 0.95109 0.86546 0.79896 0.83229 0.78071 1.20614 1.21181 1.19771 1.21096 0.93084 0.90676 1.51159 0.92462 1.19410 0.94421 0.91031 0.97679 1.21822 0.94970 0.80669 1.01524 1.48433 1.55615 1.23481 1.05918 1.22037 1.00899 0.90364 0.88488 1.22960 1.03396 0.97860 0.93251 1.21317 0.96202 0.86579 0.92040 1.22556 0.90155 0.98431 1.03990 1.22874 0.97722 0.96174 1.00056 1.22762 0.83525 1.00387 0.96022 1.48158 1.07433 1.30471 1.44538 1.20416 0.81695 0.85777 0.84218 1.90794 1.44799 1.57658 1.43933 1.23776 0.90064 0.81728 0.78370 1.90362 1.48692 1.53708 1.36483 1.22510 0.96196 0.97481 1.06696 1.23008 1.04225 0.90113 1.00728 1.23044 1.03669 1.01033 0.90608 1.20264 0.79082 0.85079 0.85166 1.90686 1.56913 1.71442 1.20920 0.92954 0.96394 0.96143 0.91222 0.91491 0.90251 0.90747 0.89148 0.88991 0.88569 0.89354 0.90163 0.89048 0.88486 0.90454 0.84267 0.87934 0.87256 0.87281 0.87593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.21 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 9 C 0.01 0.33 5.30 -27.89 -0.15 0.19 16 10 C 0.13 2.92 5.88 -4.05 -0.02 2.90 16 11 N -0.60 -11.80 2.94 -172.51 -0.51 -12.30 16 12 C 0.11 1.54 7.36 -2.99 -0.02 1.52 16 13 C -0.14 -1.67 6.05 -25.40 -0.15 -1.83 16 14 C 0.13 1.87 0.73 -132.41 -0.10 1.77 16 15 C -0.11 -1.32 5.96 -25.17 -0.15 -1.47 16 16 C -0.13 -1.11 7.09 -24.45 -0.17 -1.28 16 17 C 0.09 1.03 6.08 -2.37 -0.01 1.02 16 18 N -0.57 -7.98 2.90 -158.02 -0.46 -8.44 16 19 C 0.49 7.28 7.32 -11.76 -0.09 7.20 16 20 O -0.50 -8.60 14.82 5.48 0.08 -8.52 16 21 C 0.39 4.67 6.94 -29.80 -0.21 4.47 16 22 O -0.42 -5.08 13.86 5.99 0.08 -5.00 16 23 C -0.21 -2.01 5.95 -91.77 -0.55 -2.56 16 24 C -0.14 -0.99 10.14 -26.73 -0.27 -1.26 16 25 C -0.15 -1.10 10.05 -26.73 -0.27 -1.37 16 26 C 0.52 10.51 6.09 -11.13 -0.07 10.44 16 27 O -0.52 -12.80 17.62 5.56 0.10 -12.70 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.68 7.95 -51.93 -0.41 1.27 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 1.19 6.52 -51.93 -0.34 0.85 16 36 H 0.09 0.82 7.66 -51.93 -0.40 0.42 16 37 H 0.10 0.94 7.62 -51.93 -0.40 0.54 16 38 H 0.09 1.21 7.90 -51.93 -0.41 0.80 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.95 6.19 -51.93 -0.32 0.63 16 42 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.14 1.39 7.72 -51.93 -0.40 0.99 16 44 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.11 0.83 7.89 -51.93 -0.41 0.42 16 LS Contribution 386.87 15.07 5.83 5.83 Total: -1.00 -36.59 386.87 -9.08 -45.67 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -7.28 Total: -1.00 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -2.64 Total: 5.97 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -0.23 Total: -47.22 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: 0.26 Total: -26.22 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.59 -9.08 -45.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270755042.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.025 kcal (2) G-P(sol) polarization free energy of solvation -36.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.84 seconds