Wall clock time and date at job start Tue Mar 31 2020 21:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00361 * 2 1 4 4 H 1.48493 * 109.47032 * 270.00389 * 3 2 1 5 5 H 1.48501 * 109.46331 * 30.00225 * 3 2 1 6 6 H 1.48497 * 109.46872 * 149.99967 * 3 2 1 7 7 C 1.37887 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99625 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99910 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47244 * 180.02562 * 9 7 2 11 11 N 1.46493 * 109.47396 * 180.02562 * 10 9 7 12 12 C 1.46850 * 124.37054 * 90.00363 * 11 10 9 13 13 C 1.54635 * 105.50300 * 163.10232 * 12 11 10 14 14 C 1.53902 * 101.59385 * 24.77831 * 13 12 11 15 15 C 1.53630 * 110.19284 * 95.58785 * 14 13 12 16 16 C 1.55327 * 102.80452 * 99.94537 * 15 14 13 17 17 C 1.54977 * 101.66838 * 34.67233 * 16 15 14 18 18 N 1.46236 * 110.88115 * 215.21857 * 14 13 12 19 19 C 1.34774 * 125.81170 * 57.73777 * 18 14 13 20 20 O 1.21373 * 119.99828 * 359.72013 * 19 18 14 21 21 C 1.49087 * 119.99862 * 179.71647 * 19 18 14 22 22 O 1.20774 * 120.00229 * 0.02562 * 21 19 18 23 23 C 1.50706 * 119.99695 * 180.02562 * 21 19 18 24 24 C 1.53001 * 117.49756 * 223.62173 * 23 21 19 25 25 C 1.52999 * 59.99986 * 252.51526 * 24 23 21 26 26 C 1.34662 * 124.36785 * 269.97607 * 11 10 9 27 27 O 1.21275 * 125.07276 * 0.89199 * 26 11 10 28 28 H 0.96993 * 119.99603 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47298 * 60.00492 * 9 7 2 30 30 H 1.09002 * 109.47452 * 300.00565 * 9 7 2 31 31 H 1.09003 * 109.46778 * 59.99920 * 10 9 7 32 32 H 1.09002 * 109.47150 * 300.00496 * 10 9 7 33 33 H 1.08995 * 110.24114 * 44.08399 * 12 11 10 34 34 H 1.09003 * 110.23620 * 282.10371 * 12 11 10 35 35 H 1.09002 * 110.99999 * 266.70191 * 13 12 11 36 36 H 1.09006 * 111.03750 * 142.87566 * 13 12 11 37 37 H 1.09003 * 110.90995 * 341.52237 * 15 14 13 38 38 H 1.08995 * 110.68461 * 218.26824 * 15 14 13 39 39 H 1.08997 * 110.98842 * 276.57140 * 16 15 14 40 40 H 1.09004 * 110.98514 * 152.76685 * 16 15 14 41 41 H 1.09003 * 110.35886 * 204.55714 * 17 16 15 42 42 H 1.08996 * 110.45364 * 82.29430 * 17 16 15 43 43 H 1.08996 * 115.55128 * 9.33638 * 23 21 19 44 44 H 1.09004 * 117.49834 * 0.02562 * 24 23 21 45 45 H 1.08997 * 117.49999 * 145.02096 * 24 23 21 46 46 H 1.09004 * 117.50109 * 252.51157 * 25 24 23 47 47 H 1.08998 * 117.52032 * 107.48340 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 6 1.0986 -5.6484 -1.2136 13 6 0.7684 -7.0863 -0.7504 14 6 0.4224 -6.8618 0.7323 15 6 -1.0973 -6.7192 0.9065 16 6 -1.5212 -8.1299 1.3994 17 6 -0.3007 -8.5405 2.2616 18 7 0.8691 -7.9901 1.5484 19 6 2.1341 -8.4461 1.6387 20 8 3.0188 -7.9111 1.0028 21 6 2.4468 -9.6075 2.5196 22 8 1.5664 -10.1400 3.1521 23 6 3.8615 -10.1170 2.6209 24 6 4.0708 -11.6322 2.5867 25 6 4.2535 -10.8641 3.8973 26 6 1.1326 -5.5897 1.1101 27 8 1.3321 -5.2138 2.2457 28 1 -0.4849 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8896 31 1 2.8718 -3.6044 0.8895 32 1 2.8719 -3.6044 -0.8905 33 1 1.9118 -5.6633 -1.9392 34 1 0.2148 -5.1793 -1.6461 35 1 1.6351 -7.7391 -0.8548 36 1 -0.0870 -7.4862 -1.2950 37 1 -1.5771 -6.4813 -0.0429 38 1 -1.3297 -5.9623 1.6555 39 1 -1.6541 -8.8130 0.5604 40 1 -2.4264 -8.0764 2.0044 41 1 -0.2295 -9.6264 2.3254 42 1 -0.3756 -8.1068 3.2588 43 1 4.6208 -9.4929 2.1498 44 1 3.1853 -12.2605 2.4905 45 1 4.9679 -12.0053 2.0927 46 1 5.2708 -10.7319 4.2656 47 1 3.4883 -10.9868 4.6638 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270755042.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:04 Heat of formation + Delta-G solvation = -83.946123 kcal Electronic energy + Delta-G solvation = -29872.108920 eV Core-core repulsion = 25827.440919 eV Total energy + Delta-G solvation = -4044.668000 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 32.47 seconds Orbital eigenvalues (eV) -42.74019 -41.39791 -39.69623 -38.54430 -37.57967 -37.22998 -35.63259 -33.69077 -32.82765 -30.83923 -29.11665 -28.22766 -27.03551 -25.46546 -24.11594 -23.72707 -23.41171 -22.78446 -21.63668 -20.72185 -19.92274 -18.74742 -18.64471 -18.07926 -17.51855 -17.13593 -16.86550 -16.74492 -16.55567 -15.98273 -15.81758 -15.64214 -15.10166 -15.06797 -14.65270 -14.55565 -14.47920 -14.34092 -14.01368 -13.83388 -13.72721 -13.36809 -13.23043 -12.91495 -12.82394 -12.73948 -12.62822 -12.49098 -12.40675 -12.13689 -12.03554 -11.90102 -11.65503 -11.63102 -11.58196 -11.46179 -11.06605 -10.62467 -10.56657 -9.88712 -9.64912 -8.26713 -6.39500 -0.28684 1.10209 1.36750 1.39501 1.50426 1.60412 1.68902 2.04799 2.38851 2.73462 2.81411 3.06566 3.13956 3.31746 3.43667 3.53674 3.66374 3.72464 3.88530 3.91580 4.02762 4.11608 4.13661 4.22137 4.38431 4.54204 4.60450 4.62381 4.66257 4.66818 4.71537 4.79059 4.83030 4.85222 4.89748 4.95224 5.03376 5.11330 5.13590 5.20941 5.26765 5.40299 5.53196 5.70477 5.76953 6.09118 6.12954 6.18810 6.62932 6.74366 7.07965 7.30008 8.85553 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017318 B = 0.002920 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.414733 B = 9586.764623 C =10371.894712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.549 4.549 8 H 0.063 0.937 9 C 0.028 3.972 10 C 0.144 3.856 11 N -0.611 5.611 12 C 0.096 3.904 13 C -0.119 4.119 14 C 0.127 3.873 15 C -0.115 4.115 16 C -0.111 4.111 17 C 0.088 3.912 18 N -0.574 5.574 19 C 0.482 3.518 20 O -0.533 6.533 21 C 0.393 3.607 22 O -0.425 6.425 23 C -0.233 4.233 24 C -0.121 4.121 25 C -0.141 4.141 26 C 0.501 3.499 27 O -0.585 6.585 28 H 0.266 0.734 29 H 0.007 0.993 30 H -0.026 1.026 31 H 0.042 0.958 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.141 0.859 37 H 0.124 0.876 38 H 0.057 0.943 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.060 0.940 43 H 0.130 0.870 44 H 0.107 0.893 45 H 0.132 0.868 46 H 0.126 0.874 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.016 -27.928 -0.680 27.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.587 4.587 8 H 0.081 0.919 9 C -0.010 4.010 10 C 0.022 3.978 11 N -0.343 5.343 12 C -0.026 4.026 13 C -0.157 4.157 14 C 0.038 3.962 15 C -0.153 4.153 16 C -0.149 4.149 17 C -0.033 4.033 18 N -0.308 5.308 19 C 0.268 3.732 20 O -0.410 6.410 21 C 0.265 3.735 22 O -0.297 6.297 23 C -0.253 4.253 24 C -0.158 4.158 25 C -0.178 4.178 26 C 0.288 3.712 27 O -0.465 6.465 28 H 0.074 0.926 29 H 0.026 0.974 30 H -0.008 1.008 31 H 0.061 0.939 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.159 0.841 37 H 0.142 0.858 38 H 0.076 0.924 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.079 0.921 43 H 0.148 0.852 44 H 0.126 0.874 45 H 0.150 0.850 46 H 0.145 0.855 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.065 -27.603 -0.096 27.604 hybrid contribution 0.494 1.903 0.375 2.001 sum 0.559 -25.700 0.279 25.708 Atomic orbital electron populations 1.70100 1.07865 1.28009 1.50974 1.26000 0.95835 1.03479 0.94235 0.85369 0.78420 0.77906 0.78886 1.18862 1.20670 1.19104 1.21519 0.93645 0.91883 1.51636 0.91901 1.19175 0.94362 0.92664 0.94752 1.21378 0.94009 0.81158 1.01249 1.48574 1.55010 1.22599 1.08092 1.22421 1.02047 0.91326 0.86768 1.23000 1.05037 0.96150 0.91474 1.21417 0.97236 0.83944 0.93595 1.22651 0.88090 0.99867 1.04715 1.22925 0.97055 0.94101 1.00787 1.22977 0.83622 1.01036 0.95627 1.48423 1.08117 1.29869 1.44418 1.21123 0.81585 0.86372 0.84146 1.90758 1.45799 1.59024 1.45425 1.23774 0.91221 0.80764 0.77714 1.90347 1.49086 1.53636 1.36608 1.22491 0.94275 0.99386 1.09104 1.23184 1.05263 0.87691 0.99653 1.23188 1.04438 0.99943 0.90218 1.21435 0.78527 0.86924 0.84359 1.90624 1.59271 1.73334 1.23279 0.92556 0.97422 1.00801 0.93916 0.89166 0.88674 0.89269 0.89806 0.84145 0.85818 0.92429 0.86958 0.86848 0.86909 0.92132 0.85168 0.87449 0.85004 0.85534 0.88012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.92 13.29 21.45 0.28 -57.63 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.97 45.43 29.54 68.60 2.03 47.46 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.55 -32.62 9.11 25.60 0.23 -32.38 16 8 H 0.06 3.57 7.74 -2.91 -0.02 3.55 16 9 C 0.03 1.61 5.30 29.85 0.16 1.76 16 10 C 0.14 6.78 5.88 86.38 0.51 7.28 16 11 N -0.61 -24.81 2.94 -818.15 -2.41 -27.21 16 12 C 0.10 2.69 7.36 86.87 0.64 3.33 16 13 C -0.12 -2.66 6.05 31.46 0.19 -2.47 16 14 C 0.13 3.69 0.73 3.37 0.00 3.69 16 15 C -0.11 -2.54 5.96 31.61 0.19 -2.36 16 16 C -0.11 -1.56 7.09 32.07 0.23 -1.34 16 17 C 0.09 1.83 6.08 86.84 0.53 2.36 16 18 N -0.57 -15.98 2.90 -772.20 -2.24 -18.22 16 19 C 0.48 14.50 7.32 87.16 0.64 15.14 16 20 O -0.53 -19.14 14.82 -3.32 -0.05 -19.19 16 21 C 0.39 9.43 6.94 28.60 0.20 9.63 16 22 O -0.43 -9.99 13.86 -1.49 -0.02 -10.01 16 23 C -0.23 -4.37 5.95 -11.54 -0.07 -4.43 16 24 C -0.12 -1.40 10.14 30.59 0.31 -1.09 16 25 C -0.14 -1.90 10.05 30.59 0.31 -1.60 16 26 C 0.50 21.30 6.09 87.62 0.53 21.83 16 27 O -0.58 -30.96 17.62 -3.01 -0.05 -31.01 16 28 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 29 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 30 H -0.03 -1.72 8.14 -2.39 -0.02 -1.74 16 31 H 0.04 2.21 7.95 -2.39 -0.02 2.19 16 32 H 0.09 3.78 8.14 -2.39 -0.02 3.76 16 33 H 0.09 2.35 8.14 -2.39 -0.02 2.34 16 34 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.08 2.05 6.52 -2.39 -0.02 2.04 16 36 H 0.14 1.82 7.66 -2.38 -0.02 1.80 16 37 H 0.12 2.03 7.62 -2.39 -0.02 2.01 16 38 H 0.06 1.63 7.90 -2.39 -0.02 1.61 16 39 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.11 1.99 6.19 -2.39 -0.01 1.97 16 42 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.13 2.67 7.72 -2.39 -0.02 2.65 16 44 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.13 1.25 8.14 -2.38 -0.02 1.23 16 47 H 0.10 1.48 7.89 -2.39 -0.02 1.46 16 Total: -1.00 -86.14 386.87 3.57 -82.57 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.97 Total: 13.26 kcal Atomic # 6 Polarization: 14.94 SS G_CDS: 5.06 Total: 20.00 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -4.36 Total: -103.07 kcal Atomic # 8 Polarization: -60.09 SS G_CDS: -0.12 Total: -60.21 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -86.14 3.57 -82.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270755042.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.380 kcal (2) G-P(sol) polarization free energy of solvation -86.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 32.47 seconds