Wall clock time and date at job start Tue Mar 31 2020 21:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.47309 * 135.87555 * 359.63630 * 13 11 10 15 15 C 1.51984 * 87.70501 * 206.05797 * 14 13 11 16 16 C 1.52670 * 122.00481 * 100.01744 * 15 14 13 17 17 N 1.48227 * 85.71325 * 104.28297 * 16 15 14 18 18 C 1.46896 * 110.99770 * 136.72612 * 17 16 15 19 19 C 1.53008 * 109.47093 * 90.28162 * 18 17 16 20 20 C 1.53004 * 109.47204 * 179.97438 * 19 18 17 21 21 C 1.52996 * 109.46748 * 180.02562 * 20 19 18 22 22 F 1.39898 * 109.47457 * 59.99851 * 21 20 19 23 23 F 1.39906 * 109.46729 * 179.97438 * 21 20 19 24 24 F 1.39902 * 109.47211 * 299.99518 * 21 20 19 25 25 C 1.48222 * 91.07281 * 23.70344 * 17 16 15 26 26 C 1.47319 * 135.87158 * 180.02562 * 13 11 10 27 27 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 29 29 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 30 30 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 31 31 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 32 32 H 1.09000 * 113.52844 * 320.69624 * 14 13 11 33 33 H 1.09000 * 113.52832 * 91.32805 * 14 13 11 34 34 H 1.09001 * 113.83383 * 218.47889 * 16 15 14 35 35 H 1.09004 * 113.83173 * 350.08886 * 16 15 14 36 36 H 1.08998 * 109.47140 * 210.27608 * 18 17 16 37 37 H 1.09006 * 109.47745 * 330.28153 * 18 17 16 38 38 H 1.08998 * 109.46675 * 299.99731 * 19 18 17 39 39 H 1.08997 * 109.47173 * 59.99935 * 19 18 17 40 40 H 1.09005 * 109.46572 * 299.99918 * 20 19 18 41 41 H 1.09004 * 109.46851 * 59.99584 * 20 19 18 42 42 H 1.09001 * 113.83374 * 222.10159 * 25 17 16 43 43 H 1.09000 * 113.94480 * 90.50519 * 25 17 16 44 44 H 1.08999 * 113.52698 * 268.67143 * 26 13 11 45 45 H 1.09000 * 113.52994 * 39.22905 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2788 -4.9671 0.0011 13 7 2.1655 -6.1344 0.0008 14 6 3.5823 -6.5374 -0.0068 15 6 3.1465 -7.8351 -0.6670 16 6 3.2747 -8.0604 -2.1715 17 7 4.4360 -8.9167 -1.8319 18 6 4.4226 -10.1577 -2.6177 19 6 5.2005 -9.9464 -3.9182 20 6 5.1871 -11.2392 -4.7364 21 6 5.9654 -11.0279 -6.0365 22 9 7.2868 -10.6789 -5.7376 23 9 5.9537 -12.2103 -6.7843 24 9 5.3679 -10.0018 -6.7762 25 6 3.9035 -9.1459 -0.4678 26 6 1.8059 -7.5631 0.0007 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5566 0.8902 30 1 2.8718 -3.6044 0.8905 31 1 2.8718 -3.6044 -0.8895 32 1 4.2085 -5.9147 -0.6457 33 1 4.0008 -6.6755 0.9902 34 1 2.4380 -8.6059 -2.6081 35 1 3.5381 -7.1624 -2.7304 36 1 4.8883 -10.9574 -2.0417 37 1 3.3929 -10.4295 -2.8503 38 1 4.7348 -9.1466 -4.4941 39 1 6.2301 -9.6746 -3.6857 40 1 5.6530 -12.0386 -4.1601 41 1 4.1575 -11.5114 -4.9688 42 1 4.6617 -9.1022 0.3141 43 1 3.2571 -10.0198 -0.3863 44 1 1.7224 -7.9908 0.9997 45 1 0.9487 -7.7960 -0.6311 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271252633.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:29 Heat of formation + Delta-G solvation = -131.612311 kcal Electronic energy + Delta-G solvation = -28010.249601 eV Core-core repulsion = 23421.657899 eV Total energy + Delta-G solvation = -4588.591701 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 3.24 seconds Orbital eigenvalues (eV) -50.50118 -48.01142 -47.96822 -41.46088 -38.86371 -37.01987 -35.01062 -33.44673 -31.17269 -30.37180 -28.17467 -26.68745 -26.33758 -25.64712 -24.70636 -22.78268 -21.73002 -21.13640 -18.99043 -18.94558 -18.71040 -18.41960 -17.82307 -16.90852 -16.49575 -16.00588 -15.93847 -15.67411 -15.40088 -14.88501 -14.86574 -14.69706 -14.43150 -14.38999 -14.29304 -14.13527 -14.11646 -13.84030 -13.29052 -13.20496 -12.81256 -12.68704 -12.38514 -12.22954 -12.20623 -12.09314 -11.84534 -11.30650 -11.22171 -11.08821 -10.96630 -10.93933 -10.74170 -10.57203 -9.96002 -9.66156 -9.28455 -9.15381 -8.99624 -8.48838 -8.31381 -5.95777 -4.00117 2.32816 3.01537 3.19674 3.22713 3.33159 3.40215 3.41854 3.43859 3.59763 3.65169 4.01071 4.08354 4.31910 4.39433 4.47278 4.55206 4.61763 4.72294 4.88080 4.93174 4.99515 5.08134 5.16281 5.25901 5.34584 5.36207 5.39205 5.40811 5.47405 5.58258 5.63023 5.69365 5.78863 5.90379 6.07844 6.24027 6.32066 6.59088 6.90314 7.74992 7.85891 8.01105 8.07642 8.38649 8.72858 9.08350 9.63421 11.15238 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.014777 B = 0.001873 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.356706 B =14949.569023 C =16129.059655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.121 4.121 11 C 0.540 3.460 12 O -0.532 6.532 13 N -0.655 5.655 14 C 0.135 3.865 15 C -0.132 4.132 16 C 0.033 3.967 17 N -0.477 5.477 18 C 0.024 3.976 19 C -0.118 4.118 20 C -0.165 4.165 21 C 0.452 3.548 22 F -0.183 7.183 23 F -0.187 7.187 24 F -0.183 7.183 25 C 0.025 3.975 26 C 0.114 3.886 27 H 0.260 0.740 28 H 0.023 0.977 29 H 0.023 0.977 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.048 0.952 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.247 -29.146 -6.989 32.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.161 4.161 11 C 0.333 3.667 12 O -0.407 6.407 13 N -0.394 5.394 14 C 0.011 3.989 15 C -0.134 4.134 16 C -0.096 4.096 17 N -0.199 5.199 18 C -0.105 4.105 19 C -0.156 4.156 20 C -0.204 4.204 21 C 0.398 3.602 22 F -0.164 7.164 23 F -0.169 7.169 24 F -0.164 7.164 25 C -0.105 4.105 26 C -0.010 4.010 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.115 0.885 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.977 -28.532 -7.117 32.143 hybrid contribution -0.211 0.432 -0.185 0.515 sum 12.766 -28.100 -7.302 31.716 Atomic orbital electron populations 1.70015 1.06058 1.26471 1.50297 1.25036 0.94843 0.99268 0.95314 0.86522 0.80013 0.83776 0.77580 1.19724 1.20999 1.21025 1.21249 0.92980 0.90934 1.51245 0.92516 1.18925 0.93196 0.89387 0.98629 1.21821 1.00626 0.91203 1.02446 1.21280 0.87861 0.83716 0.73893 1.90682 1.14279 1.86573 1.49192 1.49948 1.08625 1.04900 1.75916 1.22412 0.84717 0.91582 1.00181 1.22994 0.97454 0.96040 0.96873 1.23717 0.92329 0.98902 0.94612 1.68527 1.36865 1.12034 1.02440 1.22589 0.99334 0.93762 0.94783 1.21487 1.03301 0.95193 0.95615 1.22868 1.02508 1.02665 0.92381 1.20599 0.78569 0.73753 0.87303 1.93195 1.37947 1.92131 1.93175 1.93193 1.96469 1.47889 1.79337 1.93204 1.83383 1.60274 1.79551 1.23684 0.97641 0.95977 0.93151 1.22648 0.96506 0.81697 1.00111 0.93006 0.95810 0.95826 0.90326 0.90295 0.89738 0.89527 0.90456 0.88530 0.90455 0.93343 0.90332 0.89573 0.87231 0.87345 0.88524 0.90526 0.89971 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.65 13.29 55.43 0.74 -26.91 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.53 -15.09 9.11 -34.44 -0.31 -15.41 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.04 0.99 4.26 -27.89 -0.12 0.87 16 10 C -0.12 -2.55 5.46 -27.88 -0.15 -2.70 16 11 C 0.54 10.91 8.08 -10.98 -0.09 10.82 16 12 O -0.53 -13.11 16.75 5.56 0.09 -13.02 16 13 N -0.66 -9.68 3.70 -185.30 -0.69 -10.37 16 14 C 0.13 1.39 8.22 -7.66 -0.06 1.33 16 15 C -0.13 -1.12 1.46 -156.02 -0.23 -1.35 16 16 C 0.03 0.27 7.78 -3.26 -0.03 0.24 16 17 N -0.48 -3.36 6.15 -245.46 -1.51 -4.87 16 18 C 0.02 0.12 4.80 -3.82 -0.02 0.10 16 19 C -0.12 -0.62 5.28 -26.72 -0.14 -0.76 16 20 C -0.17 -0.64 5.26 -26.73 -0.14 -0.78 16 21 C 0.45 2.97 3.16 37.16 0.12 3.09 16 22 F -0.18 -1.44 16.80 2.25 0.04 -1.40 16 23 F -0.19 -1.39 17.32 2.25 0.04 -1.35 16 24 F -0.18 -1.51 16.80 2.25 0.04 -1.47 16 25 C 0.02 0.15 7.78 -3.26 -0.03 0.12 16 26 C 0.11 1.25 8.44 -7.54 -0.06 1.19 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 29 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 30 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.57 7.48 -51.93 -0.39 0.18 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.31 8.08 -51.93 -0.42 -0.11 16 37 H 0.05 0.22 7.39 -51.93 -0.38 -0.17 16 38 H 0.08 0.50 7.80 -51.93 -0.41 0.09 16 39 H 0.09 0.53 7.80 -51.93 -0.41 0.12 16 40 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.36 7.93 -51.93 -0.41 -0.05 16 44 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 386.35 15.07 5.82 5.82 Total: -1.00 -35.46 386.35 -8.83 -44.30 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -7.02 Total: -5.89 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -1.36 Total: -1.64 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: -1.46 Total: -42.16 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.09 Total: -13.02 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.11 Total: -4.22 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.46 -8.83 -44.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271252633.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.315 kcal (2) G-P(sol) polarization free energy of solvation -35.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.24 seconds