Wall clock time and date at job start Tue Mar 31 2020 21:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 119.99735 * 2 1 4 4 H 1.48496 * 109.47077 * 270.00282 * 3 2 1 5 5 H 1.48501 * 109.47005 * 30.00117 * 3 2 1 6 6 H 1.48500 * 109.47048 * 149.99652 * 3 2 1 7 7 C 1.38805 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00337 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99715 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99788 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47314 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.43194 * 52.45425 * 11 10 9 13 13 C 1.54895 * 110.48589 * 289.77589 * 11 10 9 14 14 C 1.54961 * 102.77671 * 203.40346 * 13 11 10 15 15 C 1.54270 * 104.16191 * 37.88526 * 14 13 11 16 16 C 1.53869 * 106.63967 * 336.44607 * 15 14 13 17 17 H 1.08996 * 110.03529 * 240.68999 * 16 15 14 18 18 N 1.46499 * 110.03318 * 119.25877 * 16 15 14 19 19 C 1.34774 * 119.99834 * 86.45587 * 18 16 15 20 20 O 1.21689 * 120.00293 * 359.97438 * 19 18 16 21 21 C 1.46661 * 120.00073 * 180.02562 * 19 18 16 22 22 O 1.35396 * 126.11701 * 0.02562 * 21 19 18 23 23 C 1.34397 * 109.47917 * 179.89716 * 22 21 19 24 24 C 1.33901 * 108.55733 * 359.97438 * 23 22 21 25 25 C 1.35186 * 126.12030 * 179.71231 * 21 19 18 26 26 C 1.50720 * 130.57378 * 0.94069 * 25 21 19 27 27 C 1.53678 * 107.49389 * 163.75949 * 26 25 21 28 28 O 1.42900 * 109.97452 * 48.04908 * 27 26 25 29 29 C 1.43522 * 114.76480 * 287.61533 * 28 27 26 30 30 H 0.96999 * 119.99784 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00269 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.47647 * 60.00062 * 10 9 7 33 33 H 1.08996 * 109.47400 * 299.99878 * 10 9 7 34 34 H 1.09001 * 110.75082 * 321.68881 * 13 11 10 35 35 H 1.08991 * 110.75596 * 84.87571 * 13 11 10 36 36 H 1.08997 * 110.47708 * 279.23123 * 14 13 11 37 37 H 1.09002 * 110.53308 * 156.56515 * 14 13 11 38 38 H 1.09002 * 110.03399 * 217.13605 * 15 14 13 39 39 H 1.08995 * 110.02943 * 95.75505 * 15 14 13 40 40 H 0.97004 * 120.00118 * 266.45532 * 18 16 15 41 41 H 1.07998 * 125.72370 * 179.97438 * 23 22 21 42 42 H 1.09005 * 109.99954 * 44.16978 * 26 25 21 43 43 H 1.08997 * 109.67668 * 283.17309 * 26 25 21 44 44 H 1.08999 * 109.39016 * 287.89559 * 27 26 25 45 45 H 1.08997 * 109.39199 * 168.20063 * 27 26 25 46 46 H 1.08998 * 109.82192 * 291.96755 * 29 28 27 47 47 H 1.08994 * 109.87982 * 171.05966 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.3440 -4.7043 -0.8124 13 6 0.3381 -4.9130 1.3629 14 6 -0.1124 -6.3950 1.4108 15 6 1.0595 -7.1666 0.7695 16 6 1.8074 -6.1655 -0.1282 17 1 1.7895 -6.5065 -1.1633 18 7 3.1917 -6.0188 0.3285 19 6 4.1398 -6.8702 -0.1103 20 8 3.8461 -7.7610 -0.8855 21 6 5.5255 -6.7237 0.3473 22 8 5.9875 -5.7835 1.2050 23 6 7.3065 -5.9590 1.3944 24 6 7.7057 -7.0087 0.6653 25 6 6.5688 -7.5070 -0.0071 26 6 6.6348 -8.6891 -0.9398 27 6 8.1145 -8.9281 -1.2786 28 8 8.8961 -8.9237 -0.0823 29 6 9.0705 -7.6314 0.5171 30 1 -0.4850 0.8401 0.0004 31 1 0.3557 -2.3880 -0.0016 32 1 2.6842 -3.7149 0.8888 33 1 2.6855 -3.7140 -0.8911 34 1 1.0237 -4.6918 2.1808 35 1 -0.5217 -4.2438 1.3897 36 1 -1.0244 -6.5352 0.8306 37 1 -0.2618 -6.7160 2.4417 38 1 0.6785 -7.9935 0.1701 39 1 1.7265 -7.5440 1.5445 40 1 3.4258 -5.3089 0.9468 41 1 7.9384 -5.3548 2.0284 42 1 6.0758 -8.4765 -1.8512 43 1 6.2208 -9.5688 -0.4471 44 1 8.4657 -8.1387 -1.9431 45 1 8.2207 -9.8919 -1.7765 46 1 9.6940 -7.0079 -0.1236 47 1 9.5367 -7.7371 1.4967 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272293205.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:01 Heat of formation + Delta-G solvation = -59.600393 kcal Electronic energy + Delta-G solvation = -29164.383146 eV Core-core repulsion = 25120.770856 eV Total energy + Delta-G solvation = -4043.612290 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 10.48 seconds Orbital eigenvalues (eV) -43.03132 -39.99211 -38.81989 -37.95293 -34.45068 -33.99291 -33.38187 -32.29179 -31.44918 -29.71766 -28.61518 -27.55252 -26.50954 -24.63747 -23.99157 -23.04534 -22.36026 -20.45394 -20.27496 -19.96636 -19.21638 -18.33136 -17.16998 -16.76281 -16.57047 -16.31351 -15.88857 -15.50712 -15.18257 -14.99159 -14.87167 -14.55375 -14.40068 -13.91854 -13.68251 -13.59978 -13.38611 -13.08200 -12.92665 -12.86424 -12.46522 -12.33368 -11.85408 -11.59423 -11.29214 -11.19810 -10.90150 -10.90075 -10.81878 -10.53260 -10.39955 -10.34937 -10.34203 -10.01580 -9.99663 -9.71239 -9.68297 -9.13993 -8.89904 -8.75533 -6.95244 -5.79252 -3.08003 0.91699 1.98953 2.52130 3.09643 3.19017 3.41505 3.46538 3.47222 3.48172 4.18009 4.37498 4.51321 4.60668 4.66400 4.72720 4.79325 4.91364 4.97293 5.03809 5.05070 5.19263 5.37664 5.43247 5.50984 5.53133 5.59176 5.62215 5.64832 5.73874 5.75543 5.80618 5.82695 5.90209 6.03289 6.05798 6.08408 6.19591 6.25601 6.48054 6.50661 6.52658 6.63237 6.72214 6.78551 6.81231 7.49191 7.67142 8.07102 8.39567 9.51005 10.08094 10.43143 11.43542 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011539 B = 0.003089 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.021255 B = 9062.848083 C =10896.910380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.163 3.837 11 C -0.107 4.107 12 H 0.090 0.910 13 C -0.113 4.113 14 C -0.125 4.125 15 C -0.131 4.131 16 C 0.148 3.852 17 H 0.091 0.909 18 N -0.704 5.704 19 C 0.601 3.399 20 O -0.524 6.524 21 C -0.062 4.062 22 O -0.163 6.163 23 C 0.017 3.983 24 C -0.242 4.242 25 C -0.088 4.088 26 C -0.085 4.085 27 C 0.062 3.938 28 O -0.380 6.380 29 C 0.136 3.864 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.015 0.985 33 H 0.020 0.980 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.410 0.590 41 H 0.212 0.788 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.054 0.946 45 H 0.101 0.899 46 H 0.067 0.933 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.383 -18.458 2.405 22.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.373 5.373 10 C 0.035 3.965 11 C -0.126 4.126 12 H 0.108 0.892 13 C -0.151 4.151 14 C -0.163 4.163 15 C -0.170 4.170 16 C 0.043 3.957 17 H 0.109 0.891 18 N -0.356 5.356 19 C 0.387 3.613 20 O -0.402 6.402 21 C -0.113 4.113 22 O -0.059 6.059 23 C -0.052 4.052 24 C -0.244 4.244 25 C -0.091 4.091 26 C -0.122 4.122 27 C -0.015 4.015 28 O -0.298 6.298 29 C 0.060 3.940 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.033 0.967 33 H 0.037 0.963 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.248 0.752 41 H 0.228 0.772 42 H 0.116 0.884 43 H 0.108 0.892 44 H 0.073 0.927 45 H 0.119 0.881 46 H 0.085 0.915 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 13.161 -18.905 2.054 23.126 hybrid contribution 0.280 1.662 0.257 1.705 sum 13.441 -17.242 2.311 21.984 Atomic orbital electron populations 1.69658 1.05093 1.25670 1.57699 1.24731 0.95517 0.97667 1.02961 0.86199 0.78649 0.83860 0.77537 1.21717 1.21748 1.20779 1.19212 0.90995 0.84172 1.42764 0.91282 1.42322 1.05860 0.99772 1.89343 1.20582 0.93037 0.85438 0.97411 1.22488 0.98068 0.93070 0.98983 0.89174 1.22527 1.00578 0.95322 0.96641 1.22398 0.97710 0.95826 1.00325 1.22574 0.97466 0.97951 0.98989 1.21711 0.79292 0.95826 0.98878 0.89052 1.46220 1.08610 1.32837 1.47954 1.16520 0.81670 0.82286 0.80793 1.90841 1.80356 1.33747 1.35277 1.21494 0.95313 0.94172 1.00340 1.84364 1.23298 1.46400 1.51849 1.23643 0.81814 0.98718 1.01050 1.20999 0.98643 1.00585 1.04154 1.20166 0.91241 0.98193 0.99468 1.20869 0.97645 0.94904 0.98814 1.22706 0.89641 1.02707 0.86401 1.87974 1.71915 1.28667 1.41268 1.21024 0.90288 0.83797 0.98900 0.93495 0.78166 0.96738 0.96256 0.91467 0.90685 0.91542 0.91849 0.91263 0.91549 0.75204 0.77155 0.88390 0.89235 0.92735 0.88090 0.91494 0.87629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.94 13.06 55.49 0.72 -27.21 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.05 5.49 -59.91 -0.33 -18.38 16 10 C 0.16 3.18 4.72 -4.04 -0.02 3.16 16 11 C -0.11 -1.67 2.85 -88.96 -0.25 -1.93 16 12 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 13 C -0.11 -1.65 6.19 -24.70 -0.15 -1.80 16 14 C -0.12 -1.49 6.84 -25.03 -0.17 -1.66 16 15 C -0.13 -1.61 6.58 -25.61 -0.17 -1.78 16 16 C 0.15 2.06 3.09 -66.81 -0.21 1.86 16 17 H 0.09 1.34 7.61 -51.93 -0.40 0.94 16 18 N -0.70 -9.93 4.37 -54.04 -0.24 -10.17 16 19 C 0.60 8.95 7.77 -12.86 -0.10 8.85 16 20 O -0.52 -8.66 15.31 5.20 0.08 -8.58 16 21 C -0.06 -0.85 7.11 -37.27 -0.27 -1.11 16 22 O -0.16 -2.06 10.44 2.34 0.02 -2.03 16 23 C 0.02 0.16 12.06 29.21 0.35 0.52 16 24 C -0.24 -2.52 6.04 -105.01 -0.63 -3.15 16 25 C -0.09 -1.10 6.02 -104.59 -0.63 -1.73 16 26 C -0.09 -0.93 5.70 -27.52 -0.16 -1.09 16 27 C 0.06 0.55 6.75 37.51 0.25 0.81 16 28 O -0.38 -3.87 10.70 -35.23 -0.38 -4.25 16 29 C 0.14 1.12 7.27 36.03 0.26 1.38 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.38 9.98 7.64 -40.82 -0.31 9.67 16 32 H 0.02 0.29 6.39 -51.93 -0.33 -0.05 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 1.01 7.96 -51.93 -0.41 0.60 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.83 7.92 -51.93 -0.41 0.42 16 40 H 0.41 5.73 6.26 -40.82 -0.26 5.47 16 41 H 0.21 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.10 1.11 7.64 -51.93 -0.40 0.71 16 43 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.45 8.08 -51.93 -0.42 0.03 16 45 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 379.88 15.07 5.72 5.72 Total: -1.00 -32.93 379.88 -8.68 -41.62 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -7.13 Total: 11.00 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -2.14 Total: -4.96 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: 0.16 Total: -55.76 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.27 Total: -14.87 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.93 -8.68 -41.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272293205.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.984 kcal (2) G-P(sol) polarization free energy of solvation -32.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.49 seconds