Wall clock time and date at job start Tue Mar 31 2020 21:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 119.99735 * 2 1 4 4 H 1.48496 * 109.47077 * 270.00282 * 3 2 1 5 5 H 1.48501 * 109.47005 * 30.00117 * 3 2 1 6 6 H 1.48500 * 109.47048 * 149.99652 * 3 2 1 7 7 C 1.38805 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00337 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99715 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99788 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47314 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.43194 * 52.45425 * 11 10 9 13 13 C 1.54895 * 110.48589 * 289.77589 * 11 10 9 14 14 C 1.54961 * 102.77671 * 203.40346 * 13 11 10 15 15 C 1.54270 * 104.16191 * 37.88526 * 14 13 11 16 16 C 1.53869 * 106.63967 * 336.44607 * 15 14 13 17 17 H 1.08996 * 110.03529 * 240.68999 * 16 15 14 18 18 N 1.46499 * 110.03318 * 119.25877 * 16 15 14 19 19 C 1.34774 * 119.99834 * 86.45587 * 18 16 15 20 20 O 1.21689 * 120.00293 * 359.97438 * 19 18 16 21 21 C 1.46661 * 120.00073 * 180.02562 * 19 18 16 22 22 O 1.35396 * 126.11701 * 0.02562 * 21 19 18 23 23 C 1.34397 * 109.47917 * 179.89716 * 22 21 19 24 24 C 1.33901 * 108.55733 * 359.97438 * 23 22 21 25 25 C 1.35186 * 126.12030 * 179.71231 * 21 19 18 26 26 C 1.50720 * 130.57378 * 0.94069 * 25 21 19 27 27 C 1.53678 * 107.49389 * 163.75949 * 26 25 21 28 28 O 1.42900 * 109.97452 * 48.04908 * 27 26 25 29 29 C 1.43522 * 114.76480 * 287.61533 * 28 27 26 30 30 H 0.96999 * 119.99784 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00269 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.47647 * 60.00062 * 10 9 7 33 33 H 1.08996 * 109.47400 * 299.99878 * 10 9 7 34 34 H 1.09001 * 110.75082 * 321.68881 * 13 11 10 35 35 H 1.08991 * 110.75596 * 84.87571 * 13 11 10 36 36 H 1.08997 * 110.47708 * 279.23123 * 14 13 11 37 37 H 1.09002 * 110.53308 * 156.56515 * 14 13 11 38 38 H 1.09002 * 110.03399 * 217.13605 * 15 14 13 39 39 H 1.08995 * 110.02943 * 95.75505 * 15 14 13 40 40 H 0.97004 * 120.00118 * 266.45532 * 18 16 15 41 41 H 1.07998 * 125.72370 * 179.97438 * 23 22 21 42 42 H 1.09005 * 109.99954 * 44.16978 * 26 25 21 43 43 H 1.08997 * 109.67668 * 283.17309 * 26 25 21 44 44 H 1.08999 * 109.39016 * 287.89559 * 27 26 25 45 45 H 1.08997 * 109.39199 * 168.20063 * 27 26 25 46 46 H 1.08998 * 109.82192 * 291.96755 * 29 28 27 47 47 H 1.08994 * 109.87982 * 171.05966 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.3440 -4.7043 -0.8124 13 6 0.3381 -4.9130 1.3629 14 6 -0.1124 -6.3950 1.4108 15 6 1.0595 -7.1666 0.7695 16 6 1.8074 -6.1655 -0.1282 17 1 1.7895 -6.5065 -1.1633 18 7 3.1917 -6.0188 0.3285 19 6 4.1398 -6.8702 -0.1103 20 8 3.8461 -7.7610 -0.8855 21 6 5.5255 -6.7237 0.3473 22 8 5.9875 -5.7835 1.2050 23 6 7.3065 -5.9590 1.3944 24 6 7.7057 -7.0087 0.6653 25 6 6.5688 -7.5070 -0.0071 26 6 6.6348 -8.6891 -0.9398 27 6 8.1145 -8.9281 -1.2786 28 8 8.8961 -8.9237 -0.0823 29 6 9.0705 -7.6314 0.5171 30 1 -0.4850 0.8401 0.0004 31 1 0.3557 -2.3880 -0.0016 32 1 2.6842 -3.7149 0.8888 33 1 2.6855 -3.7140 -0.8911 34 1 1.0237 -4.6918 2.1808 35 1 -0.5217 -4.2438 1.3897 36 1 -1.0244 -6.5352 0.8306 37 1 -0.2618 -6.7160 2.4417 38 1 0.6785 -7.9935 0.1701 39 1 1.7265 -7.5440 1.5445 40 1 3.4258 -5.3089 0.9468 41 1 7.9384 -5.3548 2.0284 42 1 6.0758 -8.4765 -1.8512 43 1 6.2208 -9.5688 -0.4471 44 1 8.4657 -8.1387 -1.9431 45 1 8.2207 -9.8919 -1.7765 46 1 9.6940 -7.0079 -0.1236 47 1 9.5367 -7.7371 1.4967 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272293205.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:39 Heat of formation + Delta-G solvation = -81.551733 kcal Electronic energy + Delta-G solvation = -29165.335028 eV Core-core repulsion = 25120.770856 eV Total energy + Delta-G solvation = -4044.564172 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 10.00 seconds Orbital eigenvalues (eV) -43.90285 -41.16619 -39.55362 -39.17559 -36.29753 -34.96198 -34.42916 -33.34657 -33.05895 -30.66378 -30.20227 -28.62527 -27.20856 -26.38384 -24.91470 -24.12405 -23.94815 -21.49624 -21.34654 -20.87530 -20.47412 -19.45478 -18.96714 -17.67035 -17.48638 -17.25565 -16.88083 -16.64645 -16.34204 -16.11320 -15.97711 -15.76682 -15.63374 -15.20270 -15.16183 -14.85011 -14.53411 -14.44318 -14.23453 -13.68076 -13.61895 -13.25035 -13.16735 -12.85168 -12.73138 -12.59215 -12.32702 -12.19603 -12.00805 -11.93125 -11.84963 -11.69138 -11.58847 -11.50325 -11.40501 -10.93651 -10.82047 -10.53572 -10.24391 -9.65544 -9.01774 -7.96411 -5.25327 -0.04413 1.18551 1.46405 1.47992 1.56329 1.61243 2.00340 2.15585 2.54492 2.81427 3.34656 3.38291 3.41137 3.60493 3.64171 3.77871 3.83844 3.92841 4.15157 4.19110 4.28435 4.34500 4.35819 4.46216 4.49881 4.51394 4.53056 4.64004 4.70394 4.74551 4.78451 4.79208 4.82009 4.95802 4.98984 5.02473 5.07464 5.18483 5.22099 5.25467 5.32649 5.43119 5.46812 5.49156 5.73739 6.12576 6.25474 6.36302 6.93462 7.32569 8.07005 8.31587 9.26926 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011539 B = 0.003089 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.021255 B = 9062.848083 C =10896.910380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.972 3.028 4 H -0.289 1.289 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.247 4.247 8 H 0.073 0.927 9 N -0.740 5.740 10 C 0.167 3.833 11 C -0.099 4.099 12 H 0.084 0.916 13 C -0.111 4.111 14 C -0.113 4.113 15 C -0.123 4.123 16 C 0.153 3.847 17 H 0.084 0.916 18 N -0.703 5.703 19 C 0.600 3.400 20 O -0.548 6.548 21 C -0.096 4.096 22 O -0.178 6.178 23 C 0.031 3.969 24 C -0.254 4.254 25 C -0.095 4.095 26 C -0.087 4.087 27 C 0.065 3.935 28 O -0.395 6.395 29 C 0.134 3.866 30 H 0.252 0.748 31 H 0.376 0.624 32 H 0.023 0.977 33 H 0.008 0.992 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.410 0.590 41 H 0.256 0.744 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.062 0.938 45 H 0.120 0.880 46 H 0.085 0.915 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.407 -18.987 3.277 24.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.265 4.265 3 Si 0.801 3.199 4 H -0.216 1.216 5 H -0.220 1.220 6 H -0.193 1.193 7 C -0.379 4.379 8 H 0.091 0.909 9 N -0.382 5.382 10 C 0.040 3.960 11 C -0.118 4.118 12 H 0.103 0.897 13 C -0.148 4.148 14 C -0.151 4.151 15 C -0.162 4.162 16 C 0.048 3.952 17 H 0.102 0.898 18 N -0.354 5.354 19 C 0.388 3.612 20 O -0.429 6.429 21 C -0.147 4.147 22 O -0.074 6.074 23 C -0.037 4.037 24 C -0.255 4.255 25 C -0.098 4.098 26 C -0.124 4.124 27 C -0.011 4.011 28 O -0.314 6.314 29 C 0.058 3.942 30 H 0.061 0.939 31 H 0.208 0.792 32 H 0.041 0.959 33 H 0.026 0.974 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.248 0.752 41 H 0.272 0.728 42 H 0.106 0.894 43 H 0.102 0.898 44 H 0.080 0.920 45 H 0.138 0.862 46 H 0.103 0.897 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 15.215 -19.461 2.932 24.876 hybrid contribution -0.256 1.795 -0.008 1.813 sum 14.959 -17.666 2.924 23.332 Atomic orbital electron populations 1.69809 1.06543 1.26111 1.59313 1.25538 0.96389 1.00995 1.03554 0.85169 0.77816 0.79568 0.77389 1.21574 1.22048 1.19336 1.19596 0.91406 0.85399 1.41461 0.90915 1.42498 1.05647 1.00856 1.89246 1.20660 0.93551 0.84836 0.96952 1.22363 0.97334 0.92440 0.99696 0.89742 1.22465 0.99713 0.97144 0.95516 1.22340 0.97793 0.93346 1.01572 1.22513 0.97303 0.97660 0.98708 1.21648 0.79398 0.95059 0.99099 0.89815 1.46179 1.08602 1.32784 1.47836 1.16688 0.82303 0.81882 0.80363 1.90811 1.80990 1.34702 1.36399 1.21301 0.95070 0.95892 1.02465 1.84345 1.24891 1.46362 1.51839 1.24577 0.80782 0.98321 1.00060 1.21346 0.99108 1.00971 1.04106 1.20580 0.91893 0.98116 0.99234 1.20906 0.99236 0.94189 0.98066 1.22762 0.87941 1.04093 0.86315 1.87954 1.71836 1.29946 1.41660 1.21311 0.89224 0.83173 1.00461 0.93948 0.79194 0.95891 0.97359 0.91974 0.92198 0.90449 0.90177 0.90175 0.91479 0.75208 0.72804 0.89378 0.89848 0.92013 0.86189 0.89742 0.85265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.80 13.06 21.65 0.28 -58.52 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 3 Si 0.97 45.86 29.55 68.60 2.03 47.89 16 4 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.25 -13.76 9.99 84.03 0.84 -12.92 16 8 H 0.07 3.92 7.83 -2.91 -0.02 3.89 16 9 N -0.74 -37.24 5.49 -343.46 -1.89 -39.12 16 10 C 0.17 6.59 4.72 86.38 0.41 7.00 16 11 C -0.10 -3.13 2.85 -9.72 -0.03 -3.16 16 12 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 13 C -0.11 -3.20 6.19 31.91 0.20 -3.00 16 14 C -0.11 -2.51 6.84 31.70 0.22 -2.29 16 15 C -0.12 -2.88 6.58 31.32 0.21 -2.68 16 16 C 0.15 4.25 3.09 45.71 0.14 4.40 16 17 H 0.08 2.48 7.61 -2.39 -0.02 2.46 16 18 N -0.70 -19.99 4.37 -443.10 -1.94 -21.93 16 19 C 0.60 18.21 7.77 86.44 0.67 18.88 16 20 O -0.55 -18.61 15.31 -4.31 -0.07 -18.67 16 21 C -0.10 -2.66 7.11 23.77 0.17 -2.49 16 22 O -0.18 -4.33 10.44 -14.55 -0.15 -4.48 16 23 C 0.03 0.52 12.06 66.83 0.81 1.33 16 24 C -0.25 -4.78 6.04 -20.12 -0.12 -4.90 16 25 C -0.10 -2.35 6.02 -19.84 -0.12 -2.47 16 26 C -0.09 -1.89 5.70 30.08 0.17 -1.72 16 27 C 0.07 1.08 6.75 72.21 0.49 1.56 16 28 O -0.40 -7.25 10.70 -148.98 -1.59 -8.85 16 29 C 0.13 1.83 7.27 71.25 0.52 2.35 16 30 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 31 H 0.38 20.02 7.64 -92.71 -0.71 19.31 16 32 H 0.02 0.89 6.39 -2.39 -0.02 0.88 16 33 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.06 1.85 7.96 -2.39 -0.02 1.83 16 35 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.07 1.59 7.92 -2.39 -0.02 1.57 16 40 H 0.41 11.54 6.26 -92.71 -0.58 10.96 16 41 H 0.26 1.58 8.06 -2.91 -0.02 1.56 16 42 H 0.09 2.06 7.64 -2.38 -0.02 2.05 16 43 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.06 0.92 8.08 -2.39 -0.02 0.90 16 45 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.13 1.11 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -71.56 379.88 1.42 -70.14 By element: Atomic # 1 Polarization: 37.61 SS G_CDS: -0.29 Total: 37.32 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 5.03 Total: -3.78 kcal Atomic # 7 Polarization: -116.03 SS G_CDS: -3.54 Total: -119.57 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -1.81 Total: -32.00 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -71.56 1.42 -70.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272293205.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.411 kcal (2) G-P(sol) polarization free energy of solvation -71.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.00 seconds