Wall clock time and date at job start Tue Mar 31 2020 21:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99584 * 2 1 4 4 H 1.48501 * 109.46864 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47259 * 299.99850 * 3 2 1 6 6 H 1.48495 * 109.47205 * 60.00216 * 3 2 1 7 7 C 1.38811 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99492 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00367 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.43379 * 307.53262 * 11 10 9 13 13 C 1.54888 * 110.49144 * 70.22314 * 11 10 9 14 14 C 1.54880 * 102.75044 * 156.61781 * 13 11 10 15 15 C 1.54265 * 104.19918 * 322.05742 * 14 13 11 16 16 C 1.53878 * 106.59441 * 23.61137 * 15 14 13 17 17 H 1.09002 * 110.07154 * 240.68874 * 16 15 14 18 18 N 1.46501 * 110.03231 * 119.28802 * 16 15 14 19 19 C 1.34772 * 120.00458 * 87.82959 * 18 16 15 20 20 O 1.21697 * 119.99984 * 0.02562 * 19 18 16 21 21 C 1.46656 * 120.00031 * 179.97438 * 19 18 16 22 22 O 1.35390 * 126.12224 * 359.69401 * 21 19 18 23 23 C 1.34400 * 109.48274 * 179.79595 * 22 21 19 24 24 C 1.33903 * 108.55435 * 0.40401 * 23 22 21 25 25 C 1.35186 * 126.11865 * 179.97438 * 21 19 18 26 26 C 1.50722 * 130.57826 * 0.28117 * 25 21 19 27 27 C 1.53675 * 107.44573 * 164.13696 * 26 25 21 28 28 O 1.42899 * 109.97216 * 48.23999 * 27 26 25 29 29 C 1.43516 * 114.77001 * 287.62254 * 28 27 26 30 30 H 0.96996 * 120.00586 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99578 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47391 * 59.99677 * 10 9 7 33 33 H 1.09001 * 109.46813 * 299.99734 * 10 9 7 34 34 H 1.09002 * 110.75287 * 274.93733 * 13 11 10 35 35 H 1.09006 * 110.75349 * 38.30032 * 13 11 10 36 36 H 1.09000 * 110.48596 * 203.38078 * 14 13 11 37 37 H 1.09002 * 110.60022 * 80.79064 * 14 13 11 38 38 H 1.08992 * 110.03806 * 264.32723 * 15 14 13 39 39 H 1.09004 * 110.07797 * 142.91379 * 15 14 13 40 40 H 0.97004 * 119.99671 * 267.82917 * 18 16 15 41 41 H 1.07991 * 125.72537 * 180.14067 * 23 22 21 42 42 H 1.09009 * 109.86025 * 283.62369 * 26 25 21 43 43 H 1.08996 * 109.86645 * 44.64957 * 26 25 21 44 44 H 1.08999 * 109.38721 * 288.08647 * 27 26 25 45 45 H 1.09004 * 109.38671 * 168.39340 * 27 26 25 46 46 H 1.09006 * 109.81951 * 291.96980 * 29 28 27 47 47 H 1.09000 * 109.87732 * 171.06817 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 1 0.3434 -4.7048 0.8085 13 6 0.3390 -4.9125 -1.3668 14 6 -0.1114 -6.3936 -1.4147 15 6 1.0600 -7.1663 -0.7741 16 6 1.8073 -6.1655 0.1247 17 1 2.8377 -6.0561 -0.2135 18 7 1.7823 -6.6245 1.5158 19 6 2.7415 -7.4562 1.9684 20 8 3.6286 -7.8255 1.2217 21 6 2.7167 -7.9151 3.3610 22 8 1.7971 -7.5787 4.2960 23 6 2.0916 -8.1915 5.4554 24 6 3.2030 -8.9182 5.2828 25 6 3.6110 -8.7457 3.9424 26 6 4.8392 -9.4133 3.3790 27 6 5.6804 -9.9077 4.5663 28 8 4.8517 -10.6159 5.4903 29 6 3.9590 -9.7902 6.2525 30 1 -0.4851 0.8400 -0.0004 31 1 0.3556 -2.3881 0.0002 32 1 2.6849 -3.7145 0.8894 33 1 2.6848 -3.7144 -0.8906 34 1 -0.5227 -4.2455 -1.3927 35 1 1.0252 -4.6907 -2.1842 36 1 -0.2610 -6.7137 -2.4458 37 1 -1.0241 -6.5358 -0.8359 38 1 1.7274 -7.5426 -1.5492 39 1 0.6795 -7.9939 -0.1753 40 1 1.0754 -6.3299 2.1111 41 1 1.5290 -8.1083 6.3733 42 1 4.5481 -10.2577 2.7542 43 1 5.4133 -8.6972 2.7912 44 1 6.1345 -9.0536 5.0686 45 1 6.4653 -10.5709 4.2024 46 1 4.5294 -9.1676 6.9419 47 1 3.2610 -10.4150 6.8098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272293207.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:19 Heat of formation + Delta-G solvation = -64.722110 kcal Electronic energy + Delta-G solvation = -28769.094342 eV Core-core repulsion = 24725.259957 eV Total energy + Delta-G solvation = -4043.834384 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -43.10096 -39.91791 -38.86625 -37.96351 -34.56992 -34.01352 -33.46056 -32.34816 -31.41171 -29.77819 -28.60492 -27.52872 -26.56510 -24.68425 -23.95196 -23.08952 -22.05715 -20.80287 -20.18748 -19.86093 -19.61810 -18.18582 -17.12446 -16.86005 -16.54430 -16.39388 -16.24462 -15.55291 -15.25161 -15.11360 -14.65386 -14.56476 -14.24142 -13.83538 -13.70933 -13.62020 -13.32983 -13.18706 -12.97752 -12.85267 -12.52880 -12.13027 -11.90702 -11.79614 -11.38408 -11.23586 -10.97787 -10.85980 -10.79942 -10.52932 -10.41400 -10.35629 -10.30681 -10.04687 -9.96712 -9.74613 -9.71624 -9.17323 -8.87746 -8.81610 -6.91875 -5.77023 -3.05231 0.84767 1.92488 2.43971 3.03688 3.12125 3.43031 3.43113 3.49042 3.51106 4.12295 4.31468 4.51566 4.56353 4.62733 4.73155 4.80660 4.87516 4.91821 4.99157 5.02309 5.14934 5.33628 5.43998 5.48786 5.54428 5.55097 5.61651 5.63733 5.67973 5.74779 5.76760 5.80458 5.89945 6.01796 6.04026 6.13012 6.19418 6.27164 6.44514 6.51227 6.54393 6.58145 6.75989 6.77048 6.88890 7.41058 7.70903 8.01017 8.42079 9.53504 10.11043 10.46196 11.46007 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013407 B = 0.002581 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.023143 B =10846.445397 C =11913.486843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.161 3.839 11 C -0.102 4.102 12 H 0.080 0.920 13 C -0.110 4.110 14 C -0.125 4.125 15 C -0.131 4.131 16 C 0.145 3.855 17 H 0.096 0.904 18 N -0.706 5.706 19 C 0.602 3.398 20 O -0.519 6.519 21 C -0.062 4.062 22 O -0.165 6.165 23 C 0.015 3.985 24 C -0.241 4.241 25 C -0.087 4.087 26 C -0.086 4.086 27 C 0.062 3.938 28 O -0.380 6.380 29 C 0.136 3.864 30 H 0.254 0.746 31 H 0.384 0.616 32 H 0.017 0.983 33 H 0.022 0.978 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.405 0.595 41 H 0.212 0.788 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.055 0.945 45 H 0.102 0.898 46 H 0.067 0.933 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.959 -22.711 10.053 25.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.033 3.967 11 C -0.122 4.122 12 H 0.098 0.902 13 C -0.148 4.148 14 C -0.163 4.163 15 C -0.170 4.170 16 C 0.041 3.959 17 H 0.115 0.885 18 N -0.356 5.356 19 C 0.388 3.612 20 O -0.397 6.397 21 C -0.114 4.114 22 O -0.062 6.062 23 C -0.054 4.054 24 C -0.242 4.242 25 C -0.090 4.090 26 C -0.123 4.123 27 C -0.015 4.015 28 O -0.298 6.298 29 C 0.059 3.941 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.035 0.965 33 H 0.040 0.960 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.241 0.759 41 H 0.229 0.771 42 H 0.108 0.892 43 H 0.117 0.883 44 H 0.073 0.927 45 H 0.120 0.880 46 H 0.085 0.915 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.517 -22.842 9.440 25.126 hybrid contribution -0.296 1.424 0.485 1.533 sum 4.221 -21.419 9.925 23.981 Atomic orbital electron populations 1.69663 1.05083 1.25500 1.58050 1.24727 0.95529 0.97658 1.03134 0.86123 0.78828 0.84143 0.77172 1.20562 1.21860 1.21900 1.19279 0.91067 0.84175 1.42302 0.91208 1.42327 1.05820 0.99865 1.89456 1.20684 0.92905 0.85186 0.97889 1.22442 0.97958 0.93040 0.98712 0.90168 1.22453 1.00544 0.95230 0.96557 1.22385 0.97559 0.95936 1.00379 1.22548 0.97639 0.97864 0.98953 1.21816 1.01479 0.93229 0.79380 0.88549 1.46115 1.28358 1.47462 1.13636 1.16510 0.82352 0.79160 0.83221 1.90861 1.36230 1.57687 1.54957 1.21500 0.93636 1.05324 0.90892 1.84335 1.45641 1.57641 1.18533 1.23627 0.97408 0.95400 0.88966 1.21016 0.99994 1.06023 0.97201 1.20189 0.97845 0.97626 0.93300 1.20884 0.92793 1.00607 0.98051 1.22714 0.92286 0.97158 0.89316 1.87977 1.53175 1.34272 1.54384 1.21029 0.90831 0.91780 0.90416 0.93600 0.78264 0.96515 0.96041 0.90630 0.90950 0.91730 0.91816 0.91129 0.91716 0.75948 0.77147 0.89150 0.88324 0.92704 0.88023 0.91471 0.87609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 8 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.73 -18.38 5.49 -59.91 -0.33 -18.70 16 10 C 0.16 3.25 5.54 -4.04 -0.02 3.23 16 11 C -0.10 -1.60 2.59 -88.96 -0.23 -1.83 16 12 H 0.08 1.26 7.74 -51.93 -0.40 0.86 16 13 C -0.11 -1.62 6.19 -24.74 -0.15 -1.77 16 14 C -0.12 -1.48 6.83 -25.08 -0.17 -1.66 16 15 C -0.13 -1.61 6.59 -25.61 -0.17 -1.78 16 16 C 0.15 2.02 2.82 -66.81 -0.19 1.84 16 17 H 0.10 1.49 7.26 -51.93 -0.38 1.12 16 18 N -0.71 -9.31 4.98 -54.03 -0.27 -9.58 16 19 C 0.60 8.62 7.78 -12.86 -0.10 8.52 16 20 O -0.52 -8.54 15.29 5.19 0.08 -8.46 16 21 C -0.06 -0.80 7.11 -37.27 -0.27 -1.07 16 22 O -0.17 -1.87 10.44 2.34 0.02 -1.85 16 23 C 0.02 0.13 12.06 29.21 0.35 0.48 16 24 C -0.24 -2.33 6.04 -105.02 -0.63 -2.97 16 25 C -0.09 -1.04 6.02 -104.59 -0.63 -1.67 16 26 C -0.09 -0.92 5.71 -27.52 -0.16 -1.07 16 27 C 0.06 0.53 6.75 37.51 0.25 0.79 16 28 O -0.38 -3.72 10.70 -35.23 -0.38 -4.10 16 29 C 0.14 1.04 7.27 36.02 0.26 1.30 16 30 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.38 10.03 7.64 -40.82 -0.31 9.72 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.02 0.45 8.02 -51.93 -0.42 0.03 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.07 1.11 7.97 -51.93 -0.41 0.69 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.77 7.92 -51.93 -0.41 0.36 16 40 H 0.41 4.81 8.12 -40.82 -0.33 4.48 16 41 H 0.21 0.84 8.06 -52.49 -0.42 0.41 16 42 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 43 H 0.10 1.10 7.64 -51.93 -0.40 0.70 16 44 H 0.05 0.44 8.08 -51.93 -0.42 0.02 16 45 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 383.48 15.07 5.78 5.78 Total: -1.00 -33.59 383.48 -8.74 -42.33 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -7.25 Total: 9.52 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -2.10 Total: -5.01 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.13 Total: -55.74 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.27 Total: -14.41 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.59 -8.74 -42.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272293207.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.390 kcal (2) G-P(sol) polarization free energy of solvation -33.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds