Wall clock time and date at job start Tue Mar 31 2020 21:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99584 * 2 1 4 4 H 1.48501 * 109.46864 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47259 * 299.99850 * 3 2 1 6 6 H 1.48495 * 109.47205 * 60.00216 * 3 2 1 7 7 C 1.38811 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99492 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00367 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.43379 * 307.53262 * 11 10 9 13 13 C 1.54888 * 110.49144 * 70.22314 * 11 10 9 14 14 C 1.54880 * 102.75044 * 156.61781 * 13 11 10 15 15 C 1.54265 * 104.19918 * 322.05742 * 14 13 11 16 16 C 1.53878 * 106.59441 * 23.61137 * 15 14 13 17 17 H 1.09002 * 110.07154 * 240.68874 * 16 15 14 18 18 N 1.46501 * 110.03231 * 119.28802 * 16 15 14 19 19 C 1.34772 * 120.00458 * 87.82959 * 18 16 15 20 20 O 1.21697 * 119.99984 * 0.02562 * 19 18 16 21 21 C 1.46656 * 120.00031 * 179.97438 * 19 18 16 22 22 O 1.35390 * 126.12224 * 359.69401 * 21 19 18 23 23 C 1.34400 * 109.48274 * 179.79595 * 22 21 19 24 24 C 1.33903 * 108.55435 * 0.40401 * 23 22 21 25 25 C 1.35186 * 126.11865 * 179.97438 * 21 19 18 26 26 C 1.50722 * 130.57826 * 0.28117 * 25 21 19 27 27 C 1.53675 * 107.44573 * 164.13696 * 26 25 21 28 28 O 1.42899 * 109.97216 * 48.23999 * 27 26 25 29 29 C 1.43516 * 114.77001 * 287.62254 * 28 27 26 30 30 H 0.96996 * 120.00586 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99578 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47391 * 59.99677 * 10 9 7 33 33 H 1.09001 * 109.46813 * 299.99734 * 10 9 7 34 34 H 1.09002 * 110.75287 * 274.93733 * 13 11 10 35 35 H 1.09006 * 110.75349 * 38.30032 * 13 11 10 36 36 H 1.09000 * 110.48596 * 203.38078 * 14 13 11 37 37 H 1.09002 * 110.60022 * 80.79064 * 14 13 11 38 38 H 1.08992 * 110.03806 * 264.32723 * 15 14 13 39 39 H 1.09004 * 110.07797 * 142.91379 * 15 14 13 40 40 H 0.97004 * 119.99671 * 267.82917 * 18 16 15 41 41 H 1.07991 * 125.72537 * 180.14067 * 23 22 21 42 42 H 1.09009 * 109.86025 * 283.62369 * 26 25 21 43 43 H 1.08996 * 109.86645 * 44.64957 * 26 25 21 44 44 H 1.08999 * 109.38721 * 288.08647 * 27 26 25 45 45 H 1.09004 * 109.38671 * 168.39340 * 27 26 25 46 46 H 1.09006 * 109.81951 * 291.96980 * 29 28 27 47 47 H 1.09000 * 109.87732 * 171.06817 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 1 0.3434 -4.7048 0.8085 13 6 0.3390 -4.9125 -1.3668 14 6 -0.1114 -6.3936 -1.4147 15 6 1.0600 -7.1663 -0.7741 16 6 1.8073 -6.1655 0.1247 17 1 2.8377 -6.0561 -0.2135 18 7 1.7823 -6.6245 1.5158 19 6 2.7415 -7.4562 1.9684 20 8 3.6286 -7.8255 1.2217 21 6 2.7167 -7.9151 3.3610 22 8 1.7971 -7.5787 4.2960 23 6 2.0916 -8.1915 5.4554 24 6 3.2030 -8.9182 5.2828 25 6 3.6110 -8.7457 3.9424 26 6 4.8392 -9.4133 3.3790 27 6 5.6804 -9.9077 4.5663 28 8 4.8517 -10.6159 5.4903 29 6 3.9590 -9.7902 6.2525 30 1 -0.4851 0.8400 -0.0004 31 1 0.3556 -2.3881 0.0002 32 1 2.6849 -3.7145 0.8894 33 1 2.6848 -3.7144 -0.8906 34 1 -0.5227 -4.2455 -1.3927 35 1 1.0252 -4.6907 -2.1842 36 1 -0.2610 -6.7137 -2.4458 37 1 -1.0241 -6.5358 -0.8359 38 1 1.7274 -7.5426 -1.5492 39 1 0.6795 -7.9939 -0.1753 40 1 1.0754 -6.3299 2.1111 41 1 1.5290 -8.1083 6.3733 42 1 4.5481 -10.2577 2.7542 43 1 5.4133 -8.6972 2.7912 44 1 6.1345 -9.0536 5.0686 45 1 6.4653 -10.5709 4.2024 46 1 4.5294 -9.1676 6.9419 47 1 3.2610 -10.4150 6.8098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272293207.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:18 Heat of formation + Delta-G solvation = -87.702797 kcal Electronic energy + Delta-G solvation = -28770.090859 eV Core-core repulsion = 24725.259957 eV Total energy + Delta-G solvation = -4044.830902 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = -0.03 seconds Orbital eigenvalues (eV) -43.90394 -41.05620 -39.55839 -39.18364 -36.37234 -35.02829 -34.47995 -33.32767 -33.06408 -30.67807 -30.21562 -28.58881 -27.21205 -26.39889 -24.94870 -24.15736 -23.59036 -21.88860 -21.25509 -20.78021 -20.66598 -19.40001 -18.84446 -17.82745 -17.51516 -17.31019 -17.00950 -16.64279 -16.29964 -16.11266 -16.04281 -15.69044 -15.50526 -15.18548 -15.09010 -14.80429 -14.54137 -14.44181 -14.24979 -13.68260 -13.51510 -13.25833 -13.19684 -12.94762 -12.82318 -12.60345 -12.50804 -12.15187 -12.00026 -11.95696 -11.87920 -11.67773 -11.62081 -11.45999 -11.41535 -10.96497 -10.82688 -10.54177 -10.24727 -9.65820 -9.02375 -7.97626 -5.26253 -0.05126 1.18332 1.45769 1.46190 1.56462 1.58583 1.99312 2.14550 2.53649 2.80983 3.35059 3.37342 3.40608 3.59153 3.63821 3.77206 3.86898 3.92301 4.12205 4.18132 4.28092 4.34742 4.37329 4.43923 4.49540 4.51237 4.55163 4.61948 4.70000 4.70224 4.77652 4.79915 4.94213 4.95770 4.96547 5.01513 5.05438 5.14212 5.21620 5.24843 5.30914 5.44516 5.47014 5.50681 5.72697 6.12142 6.24895 6.36616 6.93914 7.31819 8.05848 8.31674 9.25827 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013407 B = 0.002581 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.023143 B =10846.445397 C =11913.486843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.247 4.247 8 H 0.070 0.930 9 N -0.739 5.739 10 C 0.163 3.837 11 C -0.091 4.091 12 H 0.082 0.918 13 C -0.110 4.110 14 C -0.112 4.112 15 C -0.123 4.123 16 C 0.152 3.848 17 H 0.078 0.922 18 N -0.701 5.701 19 C 0.600 3.400 20 O -0.550 6.550 21 C -0.095 4.095 22 O -0.175 6.175 23 C 0.034 3.966 24 C -0.255 4.255 25 C -0.096 4.096 26 C -0.088 4.088 27 C 0.066 3.934 28 O -0.396 6.396 29 C 0.133 3.867 30 H 0.252 0.748 31 H 0.377 0.623 32 H 0.007 0.993 33 H 0.018 0.982 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.412 0.588 41 H 0.259 0.741 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.061 0.939 45 H 0.119 0.881 46 H 0.084 0.916 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.862 -23.799 11.567 26.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.801 3.199 4 H -0.194 1.194 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.379 4.379 8 H 0.088 0.912 9 N -0.382 5.382 10 C 0.036 3.964 11 C -0.111 4.111 12 H 0.100 0.900 13 C -0.148 4.148 14 C -0.149 4.149 15 C -0.162 4.162 16 C 0.048 3.952 17 H 0.096 0.904 18 N -0.351 5.351 19 C 0.387 3.613 20 O -0.431 6.431 21 C -0.146 4.146 22 O -0.071 6.071 23 C -0.034 4.034 24 C -0.257 4.257 25 C -0.100 4.100 26 C -0.125 4.125 27 C -0.011 4.011 28 O -0.314 6.314 29 C 0.058 3.942 30 H 0.061 0.939 31 H 0.209 0.791 32 H 0.025 0.975 33 H 0.036 0.964 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.249 0.751 41 H 0.275 0.725 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.080 0.920 45 H 0.137 0.863 46 H 0.102 0.898 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.430 -23.952 10.961 26.711 hybrid contribution -0.240 1.721 0.093 1.740 sum 4.191 -22.231 11.054 25.178 Atomic orbital electron populations 1.69803 1.06443 1.26082 1.59343 1.25525 0.96436 1.00918 1.03538 0.85100 0.78109 0.79874 0.76840 1.19416 1.21782 1.21810 1.19621 0.91332 0.85512 1.41441 0.91232 1.42471 1.05637 1.00789 1.89299 1.20768 0.93607 0.85053 0.96986 1.22281 0.97030 0.92118 0.99639 0.90004 1.22404 0.99695 0.97261 0.95398 1.22317 0.97624 0.93256 1.01710 1.22484 0.97601 0.97446 0.98678 1.21639 1.00453 0.92832 0.80319 0.90356 1.46039 1.28433 1.47213 1.13418 1.16709 0.81865 0.78824 0.83872 1.90830 1.37289 1.58890 1.56052 1.21220 0.95246 1.07295 0.90793 1.84323 1.45431 1.58165 1.19200 1.24596 0.96784 0.93012 0.89030 1.21350 1.00764 1.07013 0.96556 1.20583 0.97737 0.96952 0.94679 1.20904 0.92817 0.99976 0.98838 1.22751 0.92082 0.97784 0.88473 1.87953 1.53605 1.35281 1.54602 1.21321 0.90994 0.92013 0.89919 0.93878 0.79081 0.97467 0.96401 0.91935 0.91824 0.89967 0.90602 0.90723 0.90944 0.75147 0.72523 0.89860 0.89573 0.92030 0.86298 0.89780 0.85177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.93 13.06 21.65 0.28 -58.64 16 2 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 3 Si 0.97 46.55 29.55 68.60 2.03 48.58 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 6 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 7 C -0.25 -14.08 9.99 84.03 0.84 -13.24 16 8 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 9 N -0.74 -37.91 5.49 -343.45 -1.89 -39.80 16 10 C 0.16 6.72 5.54 86.38 0.48 7.20 16 11 C -0.09 -2.89 2.59 -9.72 -0.03 -2.91 16 12 H 0.08 2.58 7.74 -2.39 -0.02 2.56 16 13 C -0.11 -3.20 6.19 31.88 0.20 -3.00 16 14 C -0.11 -2.46 6.83 31.67 0.22 -2.24 16 15 C -0.12 -2.88 6.59 31.32 0.21 -2.68 16 16 C 0.15 4.26 2.82 45.72 0.13 4.39 16 17 H 0.08 2.50 7.26 -2.39 -0.02 2.48 16 18 N -0.70 -18.63 4.98 -443.08 -2.21 -20.83 16 19 C 0.60 17.58 7.78 86.44 0.67 18.26 16 20 O -0.55 -18.79 15.29 -4.34 -0.07 -18.85 16 21 C -0.09 -2.45 7.11 23.77 0.17 -2.28 16 22 O -0.17 -3.74 10.44 -14.53 -0.15 -3.89 16 23 C 0.03 0.49 12.06 66.83 0.81 1.30 16 24 C -0.26 -4.43 6.04 -20.12 -0.12 -4.55 16 25 C -0.10 -2.28 6.02 -19.84 -0.12 -2.40 16 26 C -0.09 -1.90 5.71 30.08 0.17 -1.73 16 27 C 0.07 1.07 6.75 72.21 0.49 1.55 16 28 O -0.40 -7.04 10.70 -148.98 -1.59 -8.63 16 29 C 0.13 1.68 7.27 71.25 0.52 2.20 16 30 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 31 H 0.38 20.16 7.64 -92.71 -0.71 19.45 16 32 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.02 0.76 8.02 -2.39 -0.02 0.74 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 1.96 7.97 -2.38 -0.02 1.94 16 36 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.07 1.62 7.92 -2.38 -0.02 1.60 16 40 H 0.41 9.72 8.12 -92.71 -0.75 8.97 16 41 H 0.26 0.87 8.06 -2.92 -0.02 0.84 16 42 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.09 2.04 7.64 -2.39 -0.02 2.02 16 44 H 0.06 0.90 8.08 -2.39 -0.02 0.88 16 45 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 46 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 47 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -73.35 383.48 1.04 -72.32 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: -0.46 Total: 33.59 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 5.09 Total: -3.83 kcal Atomic # 7 Polarization: -115.46 SS G_CDS: -3.81 Total: -119.27 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -1.81 Total: -31.38 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -73.35 1.04 -72.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272293207.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.385 kcal (2) G-P(sol) polarization free energy of solvation -73.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.03 seconds