Wall clock time and date at job start Tue Mar 31 2020 21:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86808 * 119.99931 * 2 1 4 4 H 1.48495 * 109.46960 * 270.00325 * 3 2 1 5 5 H 1.48506 * 109.47095 * 30.00100 * 3 2 1 6 6 H 1.48499 * 109.47017 * 149.99823 * 3 2 1 7 7 C 1.37868 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00218 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99854 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47338 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47373 * 179.97438 * 10 9 7 12 12 C 1.46845 * 124.36860 * 270.00333 * 11 10 9 13 13 C 1.54637 * 105.50832 * 196.87739 * 12 11 10 14 14 C 1.53889 * 101.58923 * 335.23261 * 13 12 11 15 15 C 1.53609 * 110.35861 * 143.73567 * 14 13 12 16 16 C 1.55603 * 102.81984 * 143.26945 * 15 14 13 17 17 C 1.54975 * 101.60863 * 324.97681 * 16 15 14 18 18 N 1.46652 * 110.90917 * 263.45942 * 14 13 12 19 19 C 1.46894 * 110.99898 * 2.11743 * 18 14 13 20 20 C 1.53000 * 109.47222 * 169.69914 * 19 18 14 21 21 C 1.52997 * 109.47432 * 180.02562 * 20 19 18 22 22 F 1.39903 * 109.47231 * 60.00075 * 21 20 19 23 23 F 1.39894 * 109.47190 * 180.02562 * 21 20 19 24 24 F 1.39900 * 109.47216 * 300.00412 * 21 20 19 25 25 C 1.34652 * 124.36812 * 90.00165 * 11 10 9 26 26 O 1.21282 * 125.07734 * 359.18323 * 25 11 10 27 27 H 0.96996 * 119.99879 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46950 * 59.99890 * 9 7 2 29 29 H 1.09003 * 109.47435 * 300.00027 * 9 7 2 30 30 H 1.09005 * 109.46888 * 60.00222 * 10 9 7 31 31 H 1.08997 * 109.47528 * 300.00338 * 10 9 7 32 32 H 1.09002 * 110.23973 * 315.88737 * 12 11 10 33 33 H 1.09008 * 110.24041 * 77.86483 * 12 11 10 34 34 H 1.08998 * 111.00753 * 217.15880 * 13 12 11 35 35 H 1.09003 * 111.00508 * 93.30846 * 13 12 11 36 36 H 1.08997 * 110.74846 * 261.59269 * 15 14 13 37 37 H 1.09003 * 110.74790 * 24.76124 * 15 14 13 38 38 H 1.08997 * 111.08708 * 206.88772 * 16 15 14 39 39 H 1.08997 * 110.98499 * 83.02336 * 16 15 14 40 40 H 1.09002 * 110.36947 * 277.75459 * 17 16 15 41 41 H 1.08999 * 110.36504 * 155.53578 * 17 16 15 42 42 H 1.09000 * 109.47697 * 289.70566 * 19 18 14 43 43 H 1.09002 * 109.47175 * 49.70163 * 19 18 14 44 44 H 1.08991 * 109.47502 * 300.00762 * 20 19 18 45 45 H 1.09005 * 109.46803 * 60.00578 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6528 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 1.0987 -5.6483 1.2136 13 6 0.7681 -7.0862 0.7505 14 6 0.4223 -6.8616 -0.7321 15 6 0.9193 -8.0412 -1.5814 16 6 -0.2005 -8.1925 -2.6511 17 6 -1.4647 -7.8255 -1.8332 18 7 -1.0275 -6.7453 -0.9196 19 6 -1.7327 -6.8260 0.3664 20 6 -3.2017 -6.4475 0.1672 21 6 -3.9362 -6.5309 1.5068 22 9 -3.3465 -5.6478 2.4177 23 9 -5.2794 -6.1853 1.3244 24 9 -3.8542 -7.8363 2.0031 25 6 1.1325 -5.5894 -1.1100 26 8 1.3327 -5.2140 -2.2457 27 1 -0.4850 0.8400 0.0004 28 1 0.6248 -2.5570 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.8720 -3.6043 0.8906 31 1 2.8721 -3.6043 -0.8894 32 1 1.9121 -5.6634 1.9391 33 1 0.2152 -5.1789 1.6464 34 1 -0.0877 -7.4850 1.2951 35 1 1.6345 -7.7393 0.8550 36 1 1.8731 -7.8032 -2.0522 37 1 1.0036 -8.9440 -0.9765 38 1 -0.2569 -9.2175 -3.0175 39 1 -0.0515 -7.4932 -3.4738 40 1 -1.8112 -8.6876 -1.2631 41 1 -2.2535 -7.4669 -2.4945 42 1 -1.6688 -7.8433 0.7528 43 1 -1.2734 -6.1383 1.0765 44 1 -3.2657 -5.4303 -0.2191 45 1 -3.6611 -7.1353 -0.5428 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272502220.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:11 Heat of formation + Delta-G solvation = -175.104762 kcal Electronic energy + Delta-G solvation = -30722.637348 eV Core-core repulsion = 26132.159672 eV Total energy + Delta-G solvation = -4590.477676 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.22888 -47.74444 -47.68039 -41.25742 -38.02318 -35.96507 -34.22714 -33.60373 -31.91835 -30.33370 -29.16847 -27.81366 -25.65974 -24.83736 -23.54025 -22.71783 -22.01156 -21.02307 -19.95389 -18.76623 -18.67070 -18.38950 -17.70190 -16.67661 -16.29825 -16.05402 -15.53757 -15.27424 -14.97795 -14.62863 -14.53258 -14.34052 -14.18888 -14.12538 -13.85010 -13.84288 -13.70682 -13.61364 -13.34069 -12.86944 -12.64485 -12.47079 -12.42561 -12.25458 -12.06301 -11.73890 -11.48224 -11.35782 -11.27929 -11.04441 -11.00334 -10.93384 -10.83942 -10.64414 -9.97711 -9.82525 -9.54153 -9.16333 -8.41658 -8.33842 -7.98673 -5.99051 -4.02688 2.52743 2.89496 3.33816 3.39377 3.41781 3.50192 3.61168 3.81738 3.92067 4.08715 4.17076 4.35346 4.47707 4.51312 4.69264 4.72402 4.78226 4.87769 5.02691 5.05754 5.13948 5.27070 5.37000 5.42042 5.44940 5.55496 5.60372 5.64066 5.72413 5.74426 5.87410 5.93586 6.05953 6.15068 6.47269 6.67544 6.72600 6.84111 7.04297 7.54641 7.70636 7.88875 8.01416 8.36886 8.73152 9.04183 9.61234 11.12248 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.010283 B = 0.003923 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.392358 B = 7136.165235 C = 8906.830925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.013 3.987 10 C 0.129 3.871 11 N -0.609 5.609 12 C 0.103 3.897 13 C -0.163 4.163 14 C 0.071 3.929 15 C -0.118 4.118 16 C -0.127 4.127 17 C 0.039 3.961 18 N -0.499 5.499 19 C 0.042 3.958 20 C -0.165 4.165 21 C 0.454 3.546 22 F -0.179 7.179 23 F -0.184 7.184 24 F -0.188 7.188 25 C 0.538 3.462 26 O -0.521 6.521 27 H 0.261 0.739 28 H 0.022 0.978 29 H 0.017 0.983 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.051 0.949 41 H 0.085 0.915 42 H 0.055 0.945 43 H 0.098 0.902 44 H 0.123 0.877 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.347 -21.764 2.670 22.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.025 4.025 10 C 0.009 3.991 11 N -0.343 5.343 12 C -0.020 4.020 13 C -0.201 4.201 14 C -0.022 4.022 15 C -0.157 4.157 16 C -0.165 4.165 17 C -0.088 4.088 18 N -0.223 5.223 19 C -0.086 4.086 20 C -0.204 4.204 21 C 0.400 3.600 22 F -0.160 7.160 23 F -0.165 7.165 24 F -0.170 7.170 25 C 0.323 3.677 26 O -0.395 6.395 27 H 0.070 0.930 28 H 0.040 0.960 29 H 0.035 0.965 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.069 0.931 41 H 0.104 0.896 42 H 0.073 0.927 43 H 0.116 0.884 44 H 0.142 0.858 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.466 -20.858 1.890 21.645 hybrid contribution 0.321 0.329 0.749 0.879 sum -5.145 -20.530 2.639 21.329 Atomic orbital electron populations 1.69979 1.06079 1.26637 1.50326 1.24991 0.94828 0.99237 0.95130 0.86572 0.79765 0.83355 0.78168 1.20595 1.21223 1.19840 1.21083 0.92989 0.90738 1.51335 0.92548 1.19392 0.94384 0.90916 0.97802 1.21810 0.95003 0.80983 1.01270 1.48527 1.56390 1.23386 1.05951 1.22051 1.00805 0.90600 0.88587 1.23361 1.03654 0.97806 0.95324 1.21907 0.88952 0.95727 0.95599 1.22659 1.00135 0.96013 0.96918 1.22784 0.93422 1.01880 0.98395 1.23240 0.98496 0.91922 0.95114 1.63102 1.01878 1.46294 1.11032 1.22475 0.91941 1.01200 0.92964 1.22864 0.96699 1.08544 0.92292 1.20540 0.77831 0.73375 0.88283 1.93227 1.83618 1.69039 1.70131 1.93191 1.35854 1.92071 1.95431 1.93167 1.96105 1.38021 1.89666 1.19994 0.78336 0.84621 0.84785 1.90671 1.56903 1.71032 1.20931 0.92960 0.95969 0.96511 0.91728 0.91157 0.90408 0.91027 0.88267 0.89381 0.89959 0.90611 0.90576 0.89665 0.93113 0.89638 0.92740 0.88372 0.85846 0.87380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.24 13.29 55.43 0.74 -26.51 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.01 0.34 5.30 -27.88 -0.15 0.20 16 10 C 0.13 2.75 5.88 -4.04 -0.02 2.73 16 11 N -0.61 -11.06 2.94 -172.50 -0.51 -11.56 16 12 C 0.10 1.38 6.99 -2.99 -0.02 1.36 16 13 C -0.16 -1.69 5.51 -25.41 -0.14 -1.83 16 14 C 0.07 0.93 0.99 -132.20 -0.13 0.80 16 15 C -0.12 -1.28 5.86 -25.03 -0.15 -1.42 16 16 C -0.13 -1.27 7.11 -24.30 -0.17 -1.44 16 17 C 0.04 0.38 5.83 -2.13 -0.01 0.37 16 18 N -0.50 -6.20 4.85 -217.42 -1.05 -7.25 16 19 C 0.04 0.43 3.16 -3.83 -0.01 0.42 16 20 C -0.17 -1.58 5.31 -26.73 -0.14 -1.72 16 21 C 0.45 4.73 3.16 37.16 0.12 4.84 16 22 F -0.18 -2.20 16.80 2.25 0.04 -2.16 16 23 F -0.18 -2.07 17.32 2.25 0.04 -2.03 16 24 F -0.19 -1.89 16.80 2.25 0.04 -1.85 16 25 C 0.54 9.99 6.97 -11.13 -0.08 9.91 16 26 O -0.52 -11.83 17.43 5.56 0.10 -11.73 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.07 1.57 7.95 -51.93 -0.41 1.16 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.99 6.76 -51.92 -0.35 0.64 16 34 H 0.10 0.84 4.85 -51.93 -0.25 0.59 16 35 H 0.09 0.76 7.83 -51.93 -0.41 0.35 16 36 H 0.08 1.00 7.79 -51.93 -0.40 0.59 16 37 H 0.08 0.62 7.81 -51.93 -0.41 0.22 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.39 7.61 -51.93 -0.40 0.00 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.46 6.47 -51.93 -0.34 0.12 16 43 H 0.10 1.13 4.69 -51.93 -0.24 0.88 16 44 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.11 0.81 7.52 -51.93 -0.39 0.42 16 LS Contribution 367.38 15.07 5.54 5.54 Total: -1.00 -34.26 367.38 -7.94 -42.20 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -6.52 Total: -2.10 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.32 Total: 0.61 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: -0.83 Total: -45.32 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.10 Total: -11.73 kcal Atomic # 9 Polarization: -6.16 SS G_CDS: 0.11 Total: -6.04 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.26 -7.94 -42.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272502220.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.907 kcal (2) G-P(sol) polarization free energy of solvation -34.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds