Wall clock time and date at job start Tue Mar 31 2020 21:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86808 * 119.99931 * 2 1 4 4 H 1.48495 * 109.46960 * 270.00325 * 3 2 1 5 5 H 1.48506 * 109.47095 * 30.00100 * 3 2 1 6 6 H 1.48499 * 109.47017 * 149.99823 * 3 2 1 7 7 C 1.37868 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00218 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99854 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47338 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47373 * 179.97438 * 10 9 7 12 12 C 1.46845 * 124.36860 * 270.00333 * 11 10 9 13 13 C 1.54637 * 105.50832 * 196.87739 * 12 11 10 14 14 C 1.53889 * 101.58923 * 335.23261 * 13 12 11 15 15 C 1.53609 * 110.35861 * 143.73567 * 14 13 12 16 16 C 1.55603 * 102.81984 * 143.26945 * 15 14 13 17 17 C 1.54975 * 101.60863 * 324.97681 * 16 15 14 18 18 N 1.46652 * 110.90917 * 263.45942 * 14 13 12 19 19 C 1.46894 * 110.99898 * 2.11743 * 18 14 13 20 20 C 1.53000 * 109.47222 * 169.69914 * 19 18 14 21 21 C 1.52997 * 109.47432 * 180.02562 * 20 19 18 22 22 F 1.39903 * 109.47231 * 60.00075 * 21 20 19 23 23 F 1.39894 * 109.47190 * 180.02562 * 21 20 19 24 24 F 1.39900 * 109.47216 * 300.00412 * 21 20 19 25 25 C 1.34652 * 124.36812 * 90.00165 * 11 10 9 26 26 O 1.21282 * 125.07734 * 359.18323 * 25 11 10 27 27 H 0.96996 * 119.99879 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46950 * 59.99890 * 9 7 2 29 29 H 1.09003 * 109.47435 * 300.00027 * 9 7 2 30 30 H 1.09005 * 109.46888 * 60.00222 * 10 9 7 31 31 H 1.08997 * 109.47528 * 300.00338 * 10 9 7 32 32 H 1.09002 * 110.23973 * 315.88737 * 12 11 10 33 33 H 1.09008 * 110.24041 * 77.86483 * 12 11 10 34 34 H 1.08998 * 111.00753 * 217.15880 * 13 12 11 35 35 H 1.09003 * 111.00508 * 93.30846 * 13 12 11 36 36 H 1.08997 * 110.74846 * 261.59269 * 15 14 13 37 37 H 1.09003 * 110.74790 * 24.76124 * 15 14 13 38 38 H 1.08997 * 111.08708 * 206.88772 * 16 15 14 39 39 H 1.08997 * 110.98499 * 83.02336 * 16 15 14 40 40 H 1.09002 * 110.36947 * 277.75459 * 17 16 15 41 41 H 1.08999 * 110.36504 * 155.53578 * 17 16 15 42 42 H 1.09000 * 109.47697 * 289.70566 * 19 18 14 43 43 H 1.09002 * 109.47175 * 49.70163 * 19 18 14 44 44 H 1.08991 * 109.47502 * 300.00762 * 20 19 18 45 45 H 1.09005 * 109.46803 * 60.00578 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6528 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 1.0987 -5.6483 1.2136 13 6 0.7681 -7.0862 0.7505 14 6 0.4223 -6.8616 -0.7321 15 6 0.9193 -8.0412 -1.5814 16 6 -0.2005 -8.1925 -2.6511 17 6 -1.4647 -7.8255 -1.8332 18 7 -1.0275 -6.7453 -0.9196 19 6 -1.7327 -6.8260 0.3664 20 6 -3.2017 -6.4475 0.1672 21 6 -3.9362 -6.5309 1.5068 22 9 -3.3465 -5.6478 2.4177 23 9 -5.2794 -6.1853 1.3244 24 9 -3.8542 -7.8363 2.0031 25 6 1.1325 -5.5894 -1.1100 26 8 1.3327 -5.2140 -2.2457 27 1 -0.4850 0.8400 0.0004 28 1 0.6248 -2.5570 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.8720 -3.6043 0.8906 31 1 2.8721 -3.6043 -0.8894 32 1 1.9121 -5.6634 1.9391 33 1 0.2152 -5.1789 1.6464 34 1 -0.0877 -7.4850 1.2951 35 1 1.6345 -7.7393 0.8550 36 1 1.8731 -7.8032 -2.0522 37 1 1.0036 -8.9440 -0.9765 38 1 -0.2569 -9.2175 -3.0175 39 1 -0.0515 -7.4932 -3.4738 40 1 -1.8112 -8.6876 -1.2631 41 1 -2.2535 -7.4669 -2.4945 42 1 -1.6688 -7.8433 0.7528 43 1 -1.2734 -6.1383 1.0765 44 1 -3.2657 -5.4303 -0.2191 45 1 -3.6611 -7.1353 -0.5428 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272502220.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:55 Heat of formation + Delta-G solvation = -198.322693 kcal Electronic energy + Delta-G solvation = -30723.644153 eV Core-core repulsion = 26132.159672 eV Total energy + Delta-G solvation = -4591.484481 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 17.24 seconds Orbital eigenvalues (eV) -51.08690 -48.59808 -48.55698 -42.34559 -39.23830 -37.42041 -35.59119 -35.02385 -33.55536 -31.23564 -30.77007 -28.87736 -27.13840 -26.12222 -24.60809 -23.77416 -23.39753 -22.16708 -21.12227 -19.96701 -19.52221 -19.29195 -18.75263 -18.55183 -17.44552 -17.28638 -16.65287 -16.50652 -16.38002 -15.93557 -15.57742 -15.47850 -15.12242 -14.98538 -14.96396 -14.80222 -14.71903 -14.71238 -14.48327 -14.42992 -14.09632 -13.84236 -13.59794 -13.33374 -13.22532 -12.90686 -12.84800 -12.66432 -12.58337 -12.27991 -12.15295 -12.02884 -11.95915 -11.85505 -11.71845 -11.66669 -11.39285 -10.81304 -10.60747 -9.56048 -9.34001 -8.23755 -6.37237 1.38072 1.40965 1.47208 1.52030 1.81612 2.14983 2.40791 2.67619 2.98888 3.09583 3.10426 3.17918 3.27294 3.40198 3.69325 3.78181 3.94232 3.95161 4.02290 4.21137 4.25368 4.32105 4.33702 4.52384 4.59240 4.61016 4.65767 4.71297 4.80941 4.82876 4.86379 4.89693 4.99696 5.04856 5.12564 5.30553 5.34304 5.45041 5.59270 5.79613 5.83999 5.98326 6.15268 6.33497 6.78472 7.28073 7.33148 8.88423 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.010283 B = 0.003923 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.392358 B = 7136.165235 C = 8906.830925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.971 3.029 4 H -0.276 1.276 5 H -0.280 1.280 6 H -0.256 1.256 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.027 3.973 10 C 0.143 3.857 11 N -0.618 5.618 12 C 0.093 3.907 13 C -0.145 4.145 14 C 0.077 3.923 15 C -0.114 4.114 16 C -0.126 4.126 17 C 0.041 3.959 18 N -0.532 5.532 19 C 0.043 3.957 20 C -0.160 4.160 21 C 0.458 3.542 22 F -0.193 7.193 23 F -0.190 7.190 24 F -0.181 7.181 25 C 0.519 3.481 26 O -0.579 6.579 27 H 0.264 0.736 28 H -0.030 1.030 29 H -0.003 1.003 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.127 0.873 35 H 0.117 0.883 36 H 0.061 0.939 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.048 0.952 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.102 0.898 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.853 -24.166 4.171 24.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.202 1.202 5 H -0.205 1.205 6 H -0.180 1.180 7 C -0.584 4.584 8 H 0.085 0.915 9 C -0.011 4.011 10 C 0.021 3.979 11 N -0.350 5.350 12 C -0.029 4.029 13 C -0.182 4.182 14 C -0.016 4.016 15 C -0.153 4.153 16 C -0.164 4.164 17 C -0.085 4.085 18 N -0.258 5.258 19 C -0.085 4.085 20 C -0.198 4.198 21 C 0.404 3.596 22 F -0.174 7.174 23 F -0.172 7.172 24 F -0.162 7.162 25 C 0.306 3.694 26 O -0.458 6.458 27 H 0.073 0.927 28 H -0.012 1.012 29 H 0.015 0.985 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.145 0.855 35 H 0.135 0.865 36 H 0.080 0.920 37 H 0.135 0.865 38 H 0.127 0.873 39 H 0.067 0.933 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.121 0.879 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.979 -23.300 3.428 24.072 hybrid contribution 0.103 1.107 0.254 1.141 sum -4.876 -22.193 3.682 23.019 Atomic orbital electron populations 1.70131 1.08056 1.27879 1.51186 1.26031 0.95754 1.03619 0.94335 0.85369 0.78854 0.77943 0.78403 1.20190 1.20509 1.17975 1.21552 0.93749 0.91789 1.51287 0.91459 1.19169 0.94474 0.93238 0.94197 1.21356 0.93813 0.81153 1.01589 1.48648 1.55854 1.22380 1.08120 1.22383 1.01284 0.92090 0.87143 1.23416 1.05901 0.95937 0.92990 1.21773 0.89059 0.93010 0.97782 1.22711 0.99116 0.96326 0.97133 1.22780 0.93553 1.02767 0.97318 1.23313 0.98088 0.92217 0.94851 1.62887 1.01685 1.48557 1.12628 1.22494 0.91587 1.02568 0.91822 1.22818 0.96729 1.08061 0.92195 1.20592 0.77494 0.73295 0.88234 1.93203 1.83843 1.69669 1.70733 1.93180 1.36369 1.92176 1.95442 1.93177 1.96048 1.37372 1.89627 1.21247 0.77725 0.86505 0.83928 1.90616 1.58920 1.73029 1.23235 0.92736 1.01196 0.98472 0.89098 0.92941 0.87968 0.91997 0.85525 0.86468 0.92046 0.86504 0.87330 0.93319 0.89604 0.89869 0.89466 0.89962 0.87940 0.84871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.01 13.29 21.44 0.28 -58.72 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.97 45.34 29.54 68.60 2.03 47.36 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.55 -32.10 9.11 25.60 0.23 -31.87 16 8 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 9 C 0.03 1.53 5.30 29.85 0.16 1.69 16 10 C 0.14 6.31 5.88 86.38 0.51 6.82 16 11 N -0.62 -22.99 2.94 -818.13 -2.41 -25.39 16 12 C 0.09 2.37 6.99 86.87 0.61 2.98 16 13 C -0.14 -2.51 5.51 31.45 0.17 -2.33 16 14 C 0.08 1.91 0.99 3.28 0.00 1.91 16 15 C -0.11 -2.20 5.86 31.70 0.19 -2.01 16 16 C -0.13 -2.31 7.11 32.17 0.23 -2.08 16 17 C 0.04 0.70 5.83 86.75 0.51 1.20 16 18 N -0.53 -12.53 4.85 -841.79 -4.08 -16.62 16 19 C 0.04 0.78 3.16 86.30 0.27 1.05 16 20 C -0.16 -2.83 5.31 30.59 0.16 -2.66 16 21 C 0.46 8.90 3.16 71.98 0.23 9.13 16 22 F -0.19 -4.66 16.80 44.97 0.76 -3.90 16 23 F -0.19 -4.11 17.32 44.97 0.78 -3.33 16 24 F -0.18 -3.13 16.80 44.97 0.76 -2.37 16 25 C 0.52 19.98 6.97 87.62 0.61 20.59 16 26 O -0.58 -28.25 17.43 -3.04 -0.05 -28.31 16 27 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 28 H -0.03 -2.00 8.14 -2.38 -0.02 -2.02 16 29 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 30 H 0.09 3.50 8.14 -2.38 -0.02 3.48 16 31 H 0.05 2.48 7.95 -2.39 -0.02 2.46 16 32 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.06 1.70 6.76 -2.38 -0.02 1.69 16 34 H 0.13 1.55 4.85 -2.39 -0.01 1.54 16 35 H 0.12 1.41 7.83 -2.39 -0.02 1.40 16 36 H 0.06 1.45 7.79 -2.39 -0.02 1.43 16 37 H 0.12 1.31 7.81 -2.39 -0.02 1.30 16 38 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.09 0.87 7.61 -2.39 -0.02 0.86 16 41 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.09 1.03 6.47 -2.39 -0.02 1.02 16 43 H 0.08 1.78 4.69 -2.39 -0.01 1.77 16 44 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.13 1.66 7.52 -2.38 -0.02 1.65 16 Total: -1.00 -81.07 367.38 3.40 -77.67 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 1.01 Total: 8.70 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 4.34 Total: 4.92 kcal Atomic # 7 Polarization: -94.53 SS G_CDS: -6.20 Total: -100.73 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.05 Total: -28.31 kcal Atomic # 9 Polarization: -11.90 SS G_CDS: 2.29 Total: -9.61 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -81.07 3.40 -77.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272502220.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.657 kcal (2) G-P(sol) polarization free energy of solvation -81.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.24 seconds