Wall clock time and date at job start Tue Mar 31 2020 21:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99891 * 2 1 4 4 H 1.48501 * 109.47219 * 269.99513 * 3 2 1 5 5 H 1.48499 * 109.47291 * 30.00102 * 3 2 1 6 6 H 1.48501 * 109.47023 * 150.00182 * 3 2 1 7 7 C 1.37874 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00284 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99821 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47207 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.47495 * 179.97438 * 10 9 7 12 12 C 1.46844 * 124.36649 * 270.19754 * 11 10 9 13 13 C 1.54636 * 105.56982 * 163.36845 * 12 11 10 14 14 C 1.53873 * 101.58679 * 24.52655 * 13 12 11 15 15 C 1.53249 * 110.57991 * 215.79285 * 14 13 12 16 16 C 1.54794 * 104.80615 * 239.71628 * 15 14 13 17 17 C 1.54999 * 102.94642 * 21.89177 * 16 15 14 18 18 N 1.47077 * 110.68598 * 96.22792 * 14 13 12 19 19 C 1.46903 * 110.99635 * 336.04861 * 18 14 13 20 20 C 1.53008 * 109.46473 * 178.01850 * 19 18 14 21 21 C 1.53005 * 109.46754 * 180.02562 * 20 19 18 22 22 F 1.39896 * 109.47086 * 59.99715 * 21 20 19 23 23 F 1.39896 * 109.47105 * 179.97438 * 21 20 19 24 24 F 1.39897 * 109.46924 * 299.99857 * 21 20 19 25 25 C 1.34672 * 124.36605 * 89.99436 * 11 10 9 26 26 O 1.21285 * 125.07957 * 0.86506 * 25 11 10 27 27 H 0.97006 * 120.00167 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47328 * 59.99144 * 9 7 2 29 29 H 1.09004 * 109.47133 * 299.99513 * 9 7 2 30 30 H 1.09003 * 109.47641 * 59.99833 * 10 9 7 31 31 H 1.08997 * 109.47225 * 299.99370 * 10 9 7 32 32 H 1.09004 * 110.40059 * 44.23314 * 12 11 10 33 33 H 1.09004 * 110.08400 * 282.33600 * 12 11 10 34 34 H 1.09001 * 111.00693 * 266.44628 * 13 12 11 35 35 H 1.09001 * 111.00603 * 142.60634 * 13 12 11 36 36 H 1.09000 * 110.36782 * 358.54739 * 15 14 13 37 37 H 1.08999 * 110.37129 * 120.88506 * 15 14 13 38 38 H 1.09002 * 110.72154 * 140.25802 * 16 15 14 39 39 H 1.09001 * 110.72051 * 263.35327 * 16 15 14 40 40 H 1.09004 * 110.64296 * 81.51408 * 17 16 15 41 41 H 1.09003 * 110.64377 * 204.41268 * 17 16 15 42 42 H 1.08996 * 109.46828 * 298.01311 * 19 18 14 43 43 H 1.08995 * 109.47476 * 58.01672 * 19 18 14 44 44 H 1.09000 * 109.46655 * 299.99247 * 20 19 18 45 45 H 1.08995 * 109.47415 * 59.99784 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5128 -4.9308 0.0012 12 6 1.0952 -5.6462 1.2136 13 6 0.0211 -6.6573 0.7497 14 6 0.3914 -6.8436 -0.7321 15 6 -0.8698 -7.0218 -1.5843 16 6 -0.7064 -8.4112 -2.2468 17 6 0.3007 -9.1262 -1.3104 18 7 1.2317 -8.0373 -0.9115 19 6 1.9367 -8.3764 0.3318 20 6 2.7600 -9.6487 0.1204 21 6 3.4938 -10.0023 1.4156 22 9 2.5615 -10.2143 2.4368 23 9 4.2461 -11.1659 1.2226 24 9 4.3444 -8.9503 1.7718 25 6 1.1323 -5.5894 -1.1102 26 8 1.3576 -5.2285 -2.2459 27 1 -0.4851 0.8401 -0.0004 28 1 0.6246 -2.5570 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 2.8720 -3.6043 0.8905 31 1 2.8718 -3.6043 -0.8895 32 1 0.6709 -4.9509 1.9380 33 1 1.9449 -6.1720 1.6494 34 1 -0.9800 -6.2386 0.8526 35 1 0.1075 -7.5970 1.2952 36 1 -1.7590 -7.0040 -0.9542 37 1 -0.9269 -6.2431 -2.3449 38 1 -1.6578 -8.9427 -2.2678 39 1 -0.2988 -8.3131 -3.2530 40 1 -0.2093 -9.5347 -0.4379 41 1 0.8322 -9.9126 -1.8463 42 1 2.5995 -7.5566 0.6088 43 1 1.2107 -8.5415 1.1278 44 1 2.0971 -10.4684 -0.1566 45 1 3.4860 -9.4836 -0.6756 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272502221.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:20 Heat of formation + Delta-G solvation = -176.172037 kcal Electronic energy + Delta-G solvation = -30502.389115 eV Core-core repulsion = 25911.865159 eV Total energy + Delta-G solvation = -4590.523956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 14.50 seconds Orbital eigenvalues (eV) -50.39057 -47.90101 -47.85023 -41.33890 -38.06210 -35.94222 -34.40470 -33.60201 -31.88563 -30.44128 -29.13571 -27.93248 -25.65689 -24.93568 -23.75088 -22.75636 -21.91724 -20.98656 -20.15654 -18.85714 -18.82450 -18.47650 -17.81045 -16.65926 -16.53964 -15.93812 -15.60933 -15.35010 -15.12865 -14.75861 -14.56584 -14.46685 -14.29922 -14.27603 -14.01394 -14.00873 -13.84758 -13.58161 -13.12639 -12.92349 -12.68540 -12.56869 -12.48472 -12.31421 -12.10233 -11.96727 -11.76467 -11.44638 -11.30731 -11.18327 -10.94727 -10.80954 -10.71791 -10.63767 -10.01386 -9.87734 -9.56731 -9.19846 -8.56062 -8.37646 -8.01701 -6.02956 -4.06345 2.39205 2.85911 3.31958 3.35025 3.38321 3.41572 3.52337 3.64525 3.73813 3.98365 4.23831 4.30306 4.44671 4.45533 4.57613 4.59845 4.73410 4.82386 4.96570 4.97375 5.12650 5.22846 5.30580 5.33396 5.39329 5.44764 5.58228 5.66164 5.73549 5.78838 5.87258 5.94357 6.03049 6.14807 6.46917 6.53928 6.60173 6.80389 7.00355 7.49794 7.66268 7.84350 7.96766 8.33244 8.69795 9.00348 9.57848 11.08445 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.014825 B = 0.003104 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.227025 B = 9018.754597 C =10224.199198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.012 3.988 10 C 0.129 3.871 11 N -0.610 5.610 12 C 0.100 3.900 13 C -0.166 4.166 14 C 0.066 3.934 15 C -0.113 4.113 16 C -0.120 4.120 17 C 0.030 3.970 18 N -0.485 5.485 19 C 0.029 3.971 20 C -0.165 4.165 21 C 0.454 3.546 22 F -0.185 7.185 23 F -0.185 7.185 24 F -0.180 7.180 25 C 0.537 3.463 26 O -0.518 6.518 27 H 0.261 0.739 28 H 0.020 0.980 29 H 0.017 0.983 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.065 0.935 44 H 0.109 0.891 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.124 -24.832 3.122 25.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.026 4.026 10 C 0.009 3.991 11 N -0.344 5.344 12 C -0.024 4.024 13 C -0.204 4.204 14 C -0.027 4.027 15 C -0.151 4.151 16 C -0.158 4.158 17 C -0.097 4.097 18 N -0.209 5.209 19 C -0.099 4.099 20 C -0.203 4.203 21 C 0.400 3.600 22 F -0.166 7.166 23 F -0.166 7.166 24 F -0.162 7.162 25 C 0.321 3.679 26 O -0.392 6.392 27 H 0.071 0.929 28 H 0.039 0.961 29 H 0.035 0.965 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.105 0.895 42 H 0.114 0.886 43 H 0.082 0.918 44 H 0.128 0.872 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.588 -24.339 2.157 24.441 hybrid contribution -0.017 0.803 1.044 1.317 sum 0.570 -23.536 3.201 23.760 Atomic orbital electron populations 1.69970 1.06111 1.26691 1.50424 1.24995 0.94851 0.99311 0.95086 0.86552 0.79780 0.83221 0.78208 1.20562 1.21216 1.19789 1.21088 0.93066 0.90677 1.51259 0.92456 1.19403 0.94421 0.91067 0.97674 1.21811 0.95028 0.80817 1.01478 1.48569 1.56285 1.23593 1.05918 1.22094 0.96641 0.94682 0.88952 1.23358 1.00729 1.00593 0.95745 1.21958 0.93813 0.91477 0.95477 1.22315 0.94747 0.98823 0.99249 1.22511 0.98651 0.94931 0.99699 1.23401 0.93584 0.94280 0.98483 1.64520 1.25044 1.02333 1.29050 1.22604 0.97956 0.96646 0.92718 1.22882 1.02045 1.01509 0.93906 1.20525 0.77933 0.74474 0.87104 1.93184 1.65428 1.94813 1.63220 1.93191 1.77854 1.50353 1.95227 1.93217 1.72369 1.57349 1.93224 1.19957 0.78992 0.84099 0.84825 1.90680 1.56339 1.71281 1.20898 0.92943 0.96119 0.96503 0.91615 0.91021 0.89861 0.91629 0.88966 0.88717 0.90440 0.89498 0.90680 0.90213 0.93142 0.89508 0.88610 0.91767 0.87235 0.86211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.01 0.32 5.30 -27.89 -0.15 0.17 16 10 C 0.13 2.73 5.88 -4.04 -0.02 2.71 16 11 N -0.61 -11.03 2.94 -172.51 -0.51 -11.54 16 12 C 0.10 1.33 6.65 -2.99 -0.02 1.32 16 13 C -0.17 -1.81 5.67 -25.42 -0.14 -1.95 16 14 C 0.07 0.87 0.81 -132.17 -0.11 0.76 16 15 C -0.11 -1.34 6.19 -25.66 -0.16 -1.49 16 16 C -0.12 -1.09 7.07 -24.73 -0.17 -1.27 16 17 C 0.03 0.24 5.44 -1.76 -0.01 0.23 16 18 N -0.49 -5.37 5.02 -216.77 -1.09 -6.45 16 19 C 0.03 0.26 3.44 -3.82 -0.01 0.25 16 20 C -0.16 -1.19 5.14 -26.72 -0.14 -1.33 16 21 C 0.45 3.86 3.16 37.16 0.12 3.97 16 22 F -0.18 -1.65 16.80 2.25 0.04 -1.61 16 23 F -0.18 -1.67 17.32 2.25 0.04 -1.63 16 24 F -0.18 -1.85 16.80 2.25 0.04 -1.81 16 25 C 0.54 9.99 7.05 -11.13 -0.08 9.91 16 26 O -0.52 -11.86 17.13 5.55 0.10 -11.76 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.07 1.62 7.93 -51.93 -0.41 1.21 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 0.75 6.43 -51.93 -0.33 0.42 16 34 H 0.09 0.97 7.55 -51.93 -0.39 0.58 16 35 H 0.09 0.79 5.29 -51.93 -0.27 0.52 16 36 H 0.08 0.77 7.38 -51.93 -0.38 0.38 16 37 H 0.09 1.26 7.43 -51.93 -0.39 0.87 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.34 7.97 -51.93 -0.41 -0.08 16 41 H 0.09 0.59 7.71 -51.93 -0.40 0.19 16 42 H 0.10 1.04 5.85 -51.93 -0.30 0.74 16 43 H 0.06 0.51 5.10 -51.93 -0.26 0.25 16 44 H 0.11 0.58 6.98 -51.93 -0.36 0.22 16 45 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 365.18 15.07 5.50 5.50 Total: -1.00 -33.79 365.18 -7.90 -41.69 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -6.43 Total: -2.64 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -1.31 Total: -0.24 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -0.86 Total: -44.23 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.10 Total: -11.76 kcal Atomic # 9 Polarization: -5.16 SS G_CDS: 0.11 Total: -5.05 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.79 -7.90 -41.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272502221.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.477 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.50 seconds