Wall clock time and date at job start Tue Mar 31 2020 21:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99891 * 2 1 4 4 H 1.48501 * 109.47219 * 269.99513 * 3 2 1 5 5 H 1.48499 * 109.47291 * 30.00102 * 3 2 1 6 6 H 1.48501 * 109.47023 * 150.00182 * 3 2 1 7 7 C 1.37874 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00284 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99821 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47207 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.47495 * 179.97438 * 10 9 7 12 12 C 1.46844 * 124.36649 * 270.19754 * 11 10 9 13 13 C 1.54636 * 105.56982 * 163.36845 * 12 11 10 14 14 C 1.53873 * 101.58679 * 24.52655 * 13 12 11 15 15 C 1.53249 * 110.57991 * 215.79285 * 14 13 12 16 16 C 1.54794 * 104.80615 * 239.71628 * 15 14 13 17 17 C 1.54999 * 102.94642 * 21.89177 * 16 15 14 18 18 N 1.47077 * 110.68598 * 96.22792 * 14 13 12 19 19 C 1.46903 * 110.99635 * 336.04861 * 18 14 13 20 20 C 1.53008 * 109.46473 * 178.01850 * 19 18 14 21 21 C 1.53005 * 109.46754 * 180.02562 * 20 19 18 22 22 F 1.39896 * 109.47086 * 59.99715 * 21 20 19 23 23 F 1.39896 * 109.47105 * 179.97438 * 21 20 19 24 24 F 1.39897 * 109.46924 * 299.99857 * 21 20 19 25 25 C 1.34672 * 124.36605 * 89.99436 * 11 10 9 26 26 O 1.21285 * 125.07957 * 0.86506 * 25 11 10 27 27 H 0.97006 * 120.00167 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47328 * 59.99144 * 9 7 2 29 29 H 1.09004 * 109.47133 * 299.99513 * 9 7 2 30 30 H 1.09003 * 109.47641 * 59.99833 * 10 9 7 31 31 H 1.08997 * 109.47225 * 299.99370 * 10 9 7 32 32 H 1.09004 * 110.40059 * 44.23314 * 12 11 10 33 33 H 1.09004 * 110.08400 * 282.33600 * 12 11 10 34 34 H 1.09001 * 111.00693 * 266.44628 * 13 12 11 35 35 H 1.09001 * 111.00603 * 142.60634 * 13 12 11 36 36 H 1.09000 * 110.36782 * 358.54739 * 15 14 13 37 37 H 1.08999 * 110.37129 * 120.88506 * 15 14 13 38 38 H 1.09002 * 110.72154 * 140.25802 * 16 15 14 39 39 H 1.09001 * 110.72051 * 263.35327 * 16 15 14 40 40 H 1.09004 * 110.64296 * 81.51408 * 17 16 15 41 41 H 1.09003 * 110.64377 * 204.41268 * 17 16 15 42 42 H 1.08996 * 109.46828 * 298.01311 * 19 18 14 43 43 H 1.08995 * 109.47476 * 58.01672 * 19 18 14 44 44 H 1.09000 * 109.46655 * 299.99247 * 20 19 18 45 45 H 1.08995 * 109.47415 * 59.99784 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5128 -4.9308 0.0012 12 6 1.0952 -5.6462 1.2136 13 6 0.0211 -6.6573 0.7497 14 6 0.3914 -6.8436 -0.7321 15 6 -0.8698 -7.0218 -1.5843 16 6 -0.7064 -8.4112 -2.2468 17 6 0.3007 -9.1262 -1.3104 18 7 1.2317 -8.0373 -0.9115 19 6 1.9367 -8.3764 0.3318 20 6 2.7600 -9.6487 0.1204 21 6 3.4938 -10.0023 1.4156 22 9 2.5615 -10.2143 2.4368 23 9 4.2461 -11.1659 1.2226 24 9 4.3444 -8.9503 1.7718 25 6 1.1323 -5.5894 -1.1102 26 8 1.3576 -5.2285 -2.2459 27 1 -0.4851 0.8401 -0.0004 28 1 0.6246 -2.5570 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 2.8720 -3.6043 0.8905 31 1 2.8718 -3.6043 -0.8895 32 1 0.6709 -4.9509 1.9380 33 1 1.9449 -6.1720 1.6494 34 1 -0.9800 -6.2386 0.8526 35 1 0.1075 -7.5970 1.2952 36 1 -1.7590 -7.0040 -0.9542 37 1 -0.9269 -6.2431 -2.3449 38 1 -1.6578 -8.9427 -2.2678 39 1 -0.2988 -8.3131 -3.2530 40 1 -0.2093 -9.5347 -0.4379 41 1 0.8322 -9.9126 -1.8463 42 1 2.5995 -7.5566 0.6088 43 1 1.2107 -8.5415 1.1278 44 1 2.0971 -10.4684 -0.1566 45 1 3.4860 -9.4836 -0.6756 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272502221.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:14 Heat of formation + Delta-G solvation = -199.019219 kcal Electronic energy + Delta-G solvation = -30503.379844 eV Core-core repulsion = 25911.865159 eV Total energy + Delta-G solvation = -4591.514684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 6.28 seconds Orbital eigenvalues (eV) -51.06184 -48.57099 -48.54040 -42.42486 -39.25887 -37.42351 -35.57618 -35.10413 -33.50480 -31.23301 -30.72886 -28.99313 -27.05372 -26.17707 -24.74753 -23.67069 -23.42907 -22.03489 -21.24649 -19.97183 -19.50001 -19.28582 -18.70222 -18.63024 -17.46406 -17.28292 -16.68051 -16.48943 -16.25641 -16.08866 -15.65445 -15.42791 -15.25489 -14.97630 -14.89359 -14.80302 -14.69785 -14.68723 -14.53477 -14.36242 -14.10710 -13.74733 -13.55757 -13.39992 -13.19823 -13.02993 -12.88565 -12.69489 -12.55891 -12.46197 -12.20476 -12.02931 -11.99024 -11.88214 -11.66334 -11.51190 -11.41678 -10.85157 -10.61647 -9.59993 -9.41475 -8.25254 -6.38120 1.38121 1.40605 1.48398 1.51636 1.81948 2.07337 2.40047 2.68429 2.99376 3.08234 3.10444 3.13345 3.30399 3.39680 3.64542 3.79535 3.86906 3.94569 4.02145 4.16717 4.23266 4.32440 4.34091 4.53626 4.55783 4.59738 4.64481 4.69126 4.77092 4.85226 4.89441 4.93963 4.96921 5.05428 5.16767 5.26806 5.30619 5.43034 5.56605 5.71793 5.80659 5.92095 6.13907 6.28757 6.76819 7.23388 7.31823 8.86886 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.014825 B = 0.003104 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.227025 B = 9018.754597 C =10224.199198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.970 3.030 4 H -0.276 1.276 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.026 3.974 10 C 0.142 3.858 11 N -0.618 5.618 12 C 0.092 3.908 13 C -0.152 4.152 14 C 0.075 3.925 15 C -0.118 4.118 16 C -0.115 4.115 17 C 0.033 3.967 18 N -0.505 5.505 19 C 0.028 3.972 20 C -0.155 4.155 21 C 0.456 3.544 22 F -0.185 7.185 23 F -0.188 7.188 24 F -0.194 7.194 25 C 0.519 3.481 26 O -0.577 6.577 27 H 0.265 0.735 28 H -0.027 1.027 29 H 0.002 0.998 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.133 0.867 36 H 0.101 0.899 37 H 0.046 0.954 38 H 0.104 0.896 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.137 0.863 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.136 -27.030 4.703 27.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.202 1.202 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.585 4.585 8 H 0.084 0.916 9 C -0.012 4.012 10 C 0.021 3.979 11 N -0.350 5.350 12 C -0.030 4.030 13 C -0.190 4.190 14 C -0.018 4.018 15 C -0.157 4.157 16 C -0.153 4.153 17 C -0.093 4.093 18 N -0.230 5.230 19 C -0.100 4.100 20 C -0.193 4.193 21 C 0.401 3.599 22 F -0.167 7.167 23 F -0.170 7.170 24 F -0.175 7.175 25 C 0.306 3.694 26 O -0.456 6.456 27 H 0.074 0.926 28 H -0.009 1.009 29 H 0.020 0.980 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.151 0.849 36 H 0.119 0.881 37 H 0.064 0.936 38 H 0.123 0.877 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.124 0.876 42 H 0.093 0.907 43 H 0.102 0.898 44 H 0.155 0.845 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.597 -26.581 3.777 26.855 hybrid contribution -0.025 1.477 0.532 1.570 sum 0.572 -25.104 4.308 25.478 Atomic orbital electron populations 1.70108 1.07941 1.27943 1.51142 1.26005 0.95798 1.03538 0.94326 0.85377 0.78838 0.78010 0.78404 1.20212 1.20367 1.18166 1.21542 0.93728 0.91835 1.51355 0.91646 1.19191 0.94492 0.93018 0.94513 1.21348 0.93935 0.81137 1.01497 1.48671 1.55791 1.22534 1.08029 1.22429 0.98522 0.95068 0.87007 1.23406 0.99941 1.01480 0.94194 1.21770 0.93469 0.89743 0.96863 1.22366 0.95106 0.99438 0.98746 1.22522 1.00507 0.93495 0.98790 1.23539 0.92968 0.93416 0.99368 1.64406 1.25813 1.02478 1.30343 1.22601 0.98109 0.96799 0.92448 1.22836 1.02080 1.01433 0.92969 1.20686 0.77726 0.73990 0.87473 1.93182 1.65296 1.94783 1.63409 1.93186 1.78025 1.50515 1.95244 1.93195 1.72924 1.58027 1.93404 1.21137 0.78403 0.85879 0.83970 1.90623 1.58601 1.73147 1.23233 0.92649 1.00876 0.97973 0.89311 0.93105 0.90075 0.89138 0.88424 0.84887 0.88089 0.93556 0.87745 0.92047 0.90207 0.87596 0.90703 0.89794 0.84464 0.86394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.87 13.29 21.45 0.28 -57.59 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 7 C -0.55 -31.91 9.11 25.60 0.23 -31.67 16 8 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 9 C 0.03 1.43 5.30 29.85 0.16 1.59 16 10 C 0.14 6.33 5.88 86.38 0.51 6.84 16 11 N -0.62 -23.04 2.94 -818.15 -2.41 -25.45 16 12 C 0.09 2.34 6.65 86.87 0.58 2.92 16 13 C -0.15 -2.93 5.67 31.45 0.18 -2.75 16 14 C 0.07 1.90 0.81 3.06 0.00 1.90 16 15 C -0.12 -2.72 6.19 31.29 0.19 -2.53 16 16 C -0.12 -1.85 7.07 31.89 0.23 -1.62 16 17 C 0.03 0.41 5.44 86.63 0.47 0.88 16 18 N -0.51 -10.06 5.02 -839.72 -4.21 -14.27 16 19 C 0.03 0.43 3.44 86.31 0.30 0.72 16 20 C -0.15 -1.73 5.14 30.60 0.16 -1.58 16 21 C 0.46 6.56 3.16 71.98 0.23 6.79 16 22 F -0.19 -2.70 16.80 44.97 0.76 -1.95 16 23 F -0.19 -2.97 17.32 44.97 0.78 -2.20 16 24 F -0.19 -3.67 16.80 44.97 0.76 -2.92 16 25 C 0.52 20.20 7.05 87.61 0.62 20.81 16 26 O -0.58 -28.54 17.13 -3.05 -0.05 -28.59 16 27 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 28 H -0.03 -1.74 8.14 -2.39 -0.02 -1.76 16 29 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 30 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 31 H 0.05 2.44 7.93 -2.39 -0.02 2.42 16 32 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.09 1.89 6.43 -2.38 -0.02 1.87 16 34 H 0.10 1.81 7.55 -2.39 -0.02 1.80 16 35 H 0.13 1.56 5.29 -2.39 -0.01 1.55 16 36 H 0.10 1.80 7.38 -2.39 -0.02 1.78 16 37 H 0.05 1.44 7.43 -2.39 -0.02 1.42 16 38 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 0.58 7.97 -2.39 -0.02 0.56 16 41 H 0.11 0.96 7.71 -2.39 -0.02 0.94 16 42 H 0.07 1.48 5.85 -2.39 -0.01 1.46 16 43 H 0.08 0.93 5.10 -2.39 -0.01 0.91 16 44 H 0.14 0.80 6.98 -2.39 -0.02 0.78 16 45 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -79.32 365.18 3.25 -76.06 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: 1.01 Total: 7.02 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 4.31 Total: 2.86 kcal Atomic # 7 Polarization: -90.97 SS G_CDS: -6.33 Total: -97.31 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.05 Total: -28.59 kcal Atomic # 9 Polarization: -9.35 SS G_CDS: 2.29 Total: -7.06 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -79.32 3.25 -76.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272502221.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.954 kcal (2) G-P(sol) polarization free energy of solvation -79.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.29 seconds