Wall clock time and date at job start Tue Mar 31 2020 21:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00102 * 2 1 4 4 H 1.48501 * 109.47394 * 239.99874 * 3 2 1 5 5 H 1.48505 * 109.47352 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47092 * 119.99813 * 3 2 1 7 7 C 1.38811 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99975 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00152 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99830 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46915 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47360 * 305.00643 * 11 10 9 13 13 O 1.42905 * 109.46812 * 65.00678 * 11 10 9 14 14 C 1.53002 * 109.46982 * 185.00350 * 11 10 9 15 15 N 1.46500 * 109.46766 * 180.02562 * 14 11 10 16 16 C 1.34776 * 119.99845 * 179.97438 * 15 14 11 17 17 O 1.21281 * 120.00227 * 0.02562 * 16 15 14 18 18 C 1.50701 * 120.00175 * 180.02562 * 16 15 14 19 19 O 1.42896 * 109.47417 * 180.02562 * 18 16 15 20 20 C 1.35896 * 117.00588 * 179.97438 * 19 18 16 21 21 C 1.38750 * 120.08726 * 0.02562 * 20 19 18 22 22 C 1.38005 * 119.87850 * 179.97438 * 21 20 19 23 23 C 1.38542 * 120.29008 * 0.02562 * 22 21 20 24 24 C 1.38254 * 119.93787 * 359.97438 * 23 22 21 25 25 C 1.38416 * 119.90659 * 359.73872 * 24 23 22 26 26 C 1.51385 * 109.75887 * 180.02562 * 24 23 22 27 27 C 1.54347 * 105.16780 * 342.79614 * 26 24 23 28 28 C 1.51392 * 130.32422 * 180.02562 * 23 22 21 29 29 H 0.97004 * 119.99907 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00059 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.46702 * 60.00897 * 10 9 7 32 32 H 1.08998 * 109.47819 * 300.00577 * 10 9 7 33 33 H 0.96691 * 114.00079 * 59.99598 * 13 11 10 34 34 H 1.09004 * 109.47059 * 299.99867 * 14 11 10 35 35 H 1.08992 * 109.47060 * 60.00351 * 14 11 10 36 36 H 0.96995 * 120.00424 * 0.02562 * 15 14 11 37 37 H 1.09000 * 109.47120 * 300.00617 * 18 16 15 38 38 H 1.09002 * 109.47060 * 60.00522 * 18 16 15 39 39 H 1.07999 * 120.06353 * 359.97438 * 21 20 19 40 40 H 1.08007 * 119.85507 * 179.97438 * 22 21 20 41 41 H 1.07996 * 119.91785 * 180.25786 * 25 24 23 42 42 H 1.09001 * 110.29938 * 223.87586 * 26 24 23 43 43 H 1.08991 * 110.38689 * 101.76096 * 26 24 23 44 44 H 1.09001 * 110.82342 * 268.14447 * 27 26 24 45 45 H 1.08998 * 110.98862 * 144.67447 * 27 26 24 46 46 H 1.09007 * 110.30099 * 316.10860 * 28 23 22 47 47 H 1.08994 * 110.30518 * 78.25741 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 -0.0001 12 1 0.3792 -4.7130 0.8414 13 8 0.3220 -4.8115 -1.2216 14 6 1.8245 -6.1412 0.1257 15 7 0.8725 -7.2547 0.1245 16 6 1.3184 -8.5226 0.2255 17 8 2.5076 -8.7417 0.3180 18 6 0.3392 -9.6681 0.2237 19 8 1.0496 -10.9023 0.3413 20 6 0.3091 -12.0417 0.3558 21 6 -1.0733 -11.9740 0.2583 22 6 -1.8212 -13.1338 0.2730 23 6 -1.1977 -14.3659 0.3852 24 6 0.1797 -14.4359 0.4824 25 6 0.9328 -13.2748 0.4620 26 6 0.6121 -15.8824 0.5932 27 6 -0.6627 -16.6555 0.9927 28 6 -1.7845 -15.7610 0.4236 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 2.6845 -3.7145 0.8906 32 1 2.6848 -3.7146 -0.8893 33 1 0.8684 -4.9028 -2.0141 34 1 2.5090 -6.2479 -0.7159 35 1 2.3903 -6.1475 1.0573 36 1 -0.0786 -7.0796 0.0502 37 1 -0.3458 -9.5619 1.0649 38 1 -0.2262 -9.6613 -0.7083 39 1 -1.5633 -11.0155 0.1712 40 1 -2.8973 -13.0807 0.1975 41 1 2.0090 -13.3295 0.5338 42 1 1.3767 -15.9907 1.3624 43 1 0.9871 -16.2411 -0.3653 44 1 -0.7433 -16.7360 2.0767 45 1 -0.6820 -17.6423 0.5300 46 1 -2.6568 -15.7865 1.0768 47 1 -2.0540 -16.0857 -0.5814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272575651.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:23 Heat of formation + Delta-G solvation = -91.716696 kcal Electronic energy + Delta-G solvation = -26849.614427 eV Core-core repulsion = 22804.609470 eV Total energy + Delta-G solvation = -4045.004957 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -40.93228 -39.95211 -38.70892 -37.59366 -35.16221 -34.48216 -34.05266 -31.91217 -31.39307 -30.06391 -28.89877 -28.44144 -27.07630 -25.16151 -23.25284 -22.68014 -21.52359 -21.32314 -21.22116 -20.39157 -18.26013 -17.71622 -17.18573 -16.75560 -16.42913 -16.21175 -15.97250 -15.86696 -15.61390 -15.08875 -14.69718 -14.53007 -14.45273 -13.85292 -13.77596 -13.62521 -13.31131 -13.09022 -13.01325 -12.72234 -12.65639 -12.40150 -12.32515 -11.96771 -11.90538 -11.68410 -11.61457 -11.05581 -10.99240 -10.90377 -10.82254 -10.68784 -10.24253 -10.12384 -9.84190 -9.55960 -9.25161 -9.16016 -8.92848 -8.37059 -6.97404 -5.78938 -3.08859 0.94769 1.06415 2.26022 2.36848 3.34100 3.36194 3.42717 3.47138 3.48186 4.06885 4.14972 4.32022 4.49089 4.52502 4.55633 4.63223 4.64639 4.66635 4.69528 4.81640 4.87408 4.92608 5.06920 5.17115 5.24916 5.27788 5.36833 5.45040 5.50453 5.52591 5.56140 5.70054 5.71894 5.78505 5.88774 5.91513 6.00680 6.13158 6.24590 6.28387 6.35954 6.46971 6.62135 7.00573 7.28922 7.65501 7.85951 7.99724 8.39067 9.50811 10.06650 10.42343 11.43289 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.045906 B = 0.001443 C = 0.001410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.789830 B =19401.723302 C =19855.560223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.127 3.873 11 C 0.089 3.911 12 H 0.106 0.894 13 O -0.553 6.553 14 C 0.091 3.909 15 N -0.716 5.716 16 C 0.513 3.487 17 O -0.520 6.520 18 C 0.042 3.958 19 O -0.289 6.289 20 C 0.132 3.868 21 C -0.209 4.209 22 C -0.066 4.066 23 C -0.138 4.138 24 C -0.059 4.059 25 C -0.137 4.137 26 C -0.083 4.083 27 C -0.121 4.121 28 C -0.077 4.077 29 H 0.256 0.744 30 H 0.388 0.612 31 H 0.029 0.971 32 H 0.024 0.976 33 H 0.374 0.626 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.407 0.593 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.131 0.869 40 H 0.124 0.876 41 H 0.130 0.870 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.930 -33.964 0.453 34.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.088 0.912 9 N -0.370 5.370 10 C -0.002 4.002 11 C 0.029 3.971 12 H 0.124 0.876 13 O -0.358 6.358 14 C -0.033 4.033 15 N -0.370 5.370 16 C 0.297 3.703 17 O -0.395 6.395 18 C -0.037 4.037 19 O -0.201 6.201 20 C 0.087 3.913 21 C -0.228 4.228 22 C -0.084 4.084 23 C -0.139 4.139 24 C -0.059 4.059 25 C -0.156 4.156 26 C -0.120 4.120 27 C -0.158 4.158 28 C -0.115 4.115 29 H 0.066 0.934 30 H 0.223 0.777 31 H 0.047 0.953 32 H 0.041 0.959 33 H 0.221 0.779 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.242 0.758 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.148 0.852 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.218 -33.891 0.949 34.166 hybrid contribution -0.027 1.260 -0.416 1.327 sum -4.244 -32.631 0.532 32.910 Atomic orbital electron populations 1.69665 1.05124 1.25832 1.57201 1.24754 0.95528 0.97732 1.02716 0.86251 0.78520 0.83410 0.77879 1.21222 1.21622 1.21218 1.19177 0.90995 0.84102 1.43430 0.91236 1.42220 1.06039 0.99369 1.89413 1.21200 0.93485 0.86543 0.98951 1.22413 0.94650 0.91722 0.88295 0.87607 1.86573 1.37565 1.96238 1.15433 1.22151 0.92105 0.85553 1.03481 1.45732 1.11526 1.04978 1.74807 1.19975 0.89296 0.83615 0.77379 1.90764 1.16611 1.84386 1.47762 1.22476 0.94487 0.82829 1.03883 1.86145 1.34203 1.11672 1.88078 1.18819 0.89867 0.86171 0.96480 1.21160 0.92643 0.99641 1.09356 1.20387 0.99651 0.90621 0.97750 1.20513 0.94420 0.94833 1.04091 1.20332 0.93825 0.94407 0.97343 1.19785 1.00538 0.88579 1.06674 1.21073 0.98446 0.90059 1.02400 1.22299 0.93853 0.98349 1.01317 1.20982 0.98329 0.90592 1.01548 0.93408 0.77732 0.95297 0.95864 0.77904 0.90822 0.90160 0.75806 0.88826 0.88779 0.85105 0.85841 0.85163 0.90406 0.89877 0.90892 0.90464 0.90866 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.10 13.06 55.49 0.72 -27.37 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.25 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.73 -18.08 5.55 -59.91 -0.33 -18.42 16 10 C 0.13 2.40 5.90 -4.04 -0.02 2.37 16 11 C 0.09 1.29 3.09 -26.73 -0.08 1.21 16 12 H 0.11 1.59 8.14 -51.93 -0.42 1.16 16 13 O -0.55 -8.20 13.03 -35.23 -0.46 -8.66 16 14 C 0.09 1.13 5.34 -4.04 -0.02 1.11 16 15 N -0.72 -7.64 5.45 -60.29 -0.33 -7.97 16 16 C 0.51 6.28 7.91 -10.99 -0.09 6.19 16 17 O -0.52 -8.77 16.50 -14.35 -0.24 -9.01 16 18 C 0.04 0.38 5.22 36.01 0.19 0.57 16 19 O -0.29 -3.48 9.67 -39.32 -0.38 -3.86 16 20 C 0.13 1.39 6.68 -39.26 -0.26 1.13 16 21 C -0.21 -1.79 9.04 -39.48 -0.36 -2.14 16 22 C -0.07 -0.52 10.03 -39.55 -0.40 -0.92 16 23 C -0.14 -1.11 6.14 -104.16 -0.64 -1.75 16 24 C -0.06 -0.51 6.13 -104.21 -0.64 -1.14 16 25 C -0.14 -1.38 9.98 -39.38 -0.39 -1.77 16 26 C -0.08 -0.49 6.77 -26.84 -0.18 -0.67 16 27 C -0.12 -0.57 7.08 -25.32 -0.18 -0.75 16 28 C -0.08 -0.43 6.77 -26.83 -0.18 -0.61 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.39 10.34 7.67 -40.82 -0.31 10.03 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.37 4.58 9.04 45.56 0.41 4.99 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.41 3.48 8.35 -40.82 -0.34 3.14 16 37 H 0.09 0.62 7.66 -51.93 -0.40 0.22 16 38 H 0.09 0.63 7.67 -51.93 -0.40 0.23 16 39 H 0.13 0.82 6.31 -52.49 -0.33 0.49 16 40 H 0.12 0.71 8.06 -52.48 -0.42 0.28 16 41 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 394.20 15.07 5.94 5.94 Total: -1.00 -35.53 394.20 -10.01 -45.54 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -6.41 Total: 11.10 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -3.50 Total: -4.59 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.06 Total: -53.76 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -1.08 Total: -21.52 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.53 -10.01 -45.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272575651.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.176 kcal (2) G-P(sol) polarization free energy of solvation -35.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds