Wall clock time and date at job start Tue Mar 31 2020 21:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00102 * 2 1 4 4 H 1.48501 * 109.47394 * 239.99874 * 3 2 1 5 5 H 1.48505 * 109.47352 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47092 * 119.99813 * 3 2 1 7 7 C 1.38811 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99975 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00152 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99830 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46915 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47360 * 305.00643 * 11 10 9 13 13 O 1.42905 * 109.46812 * 65.00678 * 11 10 9 14 14 C 1.53002 * 109.46982 * 185.00350 * 11 10 9 15 15 N 1.46500 * 109.46766 * 180.02562 * 14 11 10 16 16 C 1.34776 * 119.99845 * 179.97438 * 15 14 11 17 17 O 1.21281 * 120.00227 * 0.02562 * 16 15 14 18 18 C 1.50701 * 120.00175 * 180.02562 * 16 15 14 19 19 O 1.42896 * 109.47417 * 180.02562 * 18 16 15 20 20 C 1.35896 * 117.00588 * 179.97438 * 19 18 16 21 21 C 1.38750 * 120.08726 * 0.02562 * 20 19 18 22 22 C 1.38005 * 119.87850 * 179.97438 * 21 20 19 23 23 C 1.38542 * 120.29008 * 0.02562 * 22 21 20 24 24 C 1.38254 * 119.93787 * 359.97438 * 23 22 21 25 25 C 1.38416 * 119.90659 * 359.73872 * 24 23 22 26 26 C 1.51385 * 109.75887 * 180.02562 * 24 23 22 27 27 C 1.54347 * 105.16780 * 342.79614 * 26 24 23 28 28 C 1.51392 * 130.32422 * 180.02562 * 23 22 21 29 29 H 0.97004 * 119.99907 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00059 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.46702 * 60.00897 * 10 9 7 32 32 H 1.08998 * 109.47819 * 300.00577 * 10 9 7 33 33 H 0.96691 * 114.00079 * 59.99598 * 13 11 10 34 34 H 1.09004 * 109.47059 * 299.99867 * 14 11 10 35 35 H 1.08992 * 109.47060 * 60.00351 * 14 11 10 36 36 H 0.96995 * 120.00424 * 0.02562 * 15 14 11 37 37 H 1.09000 * 109.47120 * 300.00617 * 18 16 15 38 38 H 1.09002 * 109.47060 * 60.00522 * 18 16 15 39 39 H 1.07999 * 120.06353 * 359.97438 * 21 20 19 40 40 H 1.08007 * 119.85507 * 179.97438 * 22 21 20 41 41 H 1.07996 * 119.91785 * 180.25786 * 25 24 23 42 42 H 1.09001 * 110.29938 * 223.87586 * 26 24 23 43 43 H 1.08991 * 110.38689 * 101.76096 * 26 24 23 44 44 H 1.09001 * 110.82342 * 268.14447 * 27 26 24 45 45 H 1.08998 * 110.98862 * 144.67447 * 27 26 24 46 46 H 1.09007 * 110.30099 * 316.10860 * 28 23 22 47 47 H 1.08994 * 110.30518 * 78.25741 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 -0.0001 12 1 0.3792 -4.7130 0.8414 13 8 0.3220 -4.8115 -1.2216 14 6 1.8245 -6.1412 0.1257 15 7 0.8725 -7.2547 0.1245 16 6 1.3184 -8.5226 0.2255 17 8 2.5076 -8.7417 0.3180 18 6 0.3392 -9.6681 0.2237 19 8 1.0496 -10.9023 0.3413 20 6 0.3091 -12.0417 0.3558 21 6 -1.0733 -11.9740 0.2583 22 6 -1.8212 -13.1338 0.2730 23 6 -1.1977 -14.3659 0.3852 24 6 0.1797 -14.4359 0.4824 25 6 0.9328 -13.2748 0.4620 26 6 0.6121 -15.8824 0.5932 27 6 -0.6627 -16.6555 0.9927 28 6 -1.7845 -15.7610 0.4236 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 2.6845 -3.7145 0.8906 32 1 2.6848 -3.7146 -0.8893 33 1 0.8684 -4.9028 -2.0141 34 1 2.5090 -6.2479 -0.7159 35 1 2.3903 -6.1475 1.0573 36 1 -0.0786 -7.0796 0.0502 37 1 -0.3458 -9.5619 1.0649 38 1 -0.2262 -9.6613 -0.7083 39 1 -1.5633 -11.0155 0.1712 40 1 -2.8973 -13.0807 0.1975 41 1 2.0090 -13.3295 0.5338 42 1 1.3767 -15.9907 1.3624 43 1 0.9871 -16.2411 -0.3653 44 1 -0.7433 -16.7360 2.0767 45 1 -0.6820 -17.6423 0.5300 46 1 -2.6568 -15.7865 1.0768 47 1 -2.0540 -16.0857 -0.5814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272575651.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:12 Heat of formation + Delta-G solvation = -117.416860 kcal Electronic energy + Delta-G solvation = -26850.728870 eV Core-core repulsion = 22804.609470 eV Total energy + Delta-G solvation = -4046.119400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 10.73 seconds Orbital eigenvalues (eV) -41.62932 -40.82503 -39.50352 -38.79544 -36.10700 -35.71077 -35.35940 -33.22679 -32.50895 -31.21927 -29.68432 -29.27097 -27.79559 -26.67112 -24.41781 -23.78964 -22.79420 -22.14168 -21.68222 -21.27796 -19.28307 -18.94482 -18.56454 -17.58745 -17.54990 -17.01237 -16.94692 -16.58694 -16.44246 -16.32231 -15.85282 -15.54475 -15.42680 -15.32632 -14.90365 -14.55755 -14.37835 -14.23490 -13.90337 -13.71426 -13.54552 -13.38805 -13.23248 -12.96545 -12.86411 -12.72257 -12.48148 -12.21962 -12.20502 -12.00842 -11.98892 -11.81488 -11.66068 -11.40342 -11.21657 -10.97907 -10.86193 -10.24885 -9.78652 -9.01569 -9.00923 -7.95332 -5.24753 0.32926 0.41437 1.42454 1.44576 1.48314 1.50586 1.56891 2.51356 2.59915 2.71917 3.35262 3.42963 3.54436 3.57694 3.63037 3.67411 3.87471 3.99318 4.04579 4.07934 4.14501 4.20558 4.20862 4.36288 4.38862 4.40603 4.48787 4.60164 4.70038 4.74673 4.86722 4.93529 4.96783 5.03009 5.05996 5.19485 5.23268 5.25192 5.31321 5.35741 5.41851 5.47746 5.68355 5.76730 6.25658 6.29547 6.45454 6.78605 7.08365 7.33227 8.08199 8.31472 9.27506 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.045906 B = 0.001443 C = 0.001410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.789830 B =19401.723302 C =19855.560223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.974 3.026 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.278 1.278 7 C -0.252 4.252 8 H 0.075 0.925 9 N -0.739 5.739 10 C 0.121 3.879 11 C 0.110 3.890 12 H 0.104 0.896 13 O -0.562 6.562 14 C 0.102 3.898 15 N -0.702 5.702 16 C 0.513 3.487 17 O -0.573 6.573 18 C 0.044 3.956 19 O -0.320 6.320 20 C 0.111 3.889 21 C -0.210 4.210 22 C -0.072 4.072 23 C -0.147 4.147 24 C -0.071 4.071 25 C -0.161 4.161 26 C -0.085 4.085 27 C -0.117 4.117 28 C -0.077 4.077 29 H 0.252 0.748 30 H 0.377 0.623 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.386 0.614 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.420 0.580 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.154 0.846 40 H 0.148 0.852 41 H 0.121 0.879 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.095 0.905 46 H 0.084 0.916 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.960 -35.313 0.268 35.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.802 3.198 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.093 0.907 9 N -0.382 5.382 10 C -0.006 4.006 11 C 0.050 3.950 12 H 0.122 0.878 13 O -0.368 6.368 14 C -0.022 4.022 15 N -0.357 5.357 16 C 0.299 3.701 17 O -0.452 6.452 18 C -0.034 4.034 19 O -0.233 6.233 20 C 0.066 3.934 21 C -0.229 4.229 22 C -0.090 4.090 23 C -0.147 4.147 24 C -0.072 4.072 25 C -0.180 4.180 26 C -0.122 4.122 27 C -0.154 4.154 28 C -0.114 4.114 29 H 0.060 0.940 30 H 0.209 0.791 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.235 0.765 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.258 0.742 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.172 0.828 40 H 0.165 0.835 41 H 0.139 0.861 42 H 0.098 0.902 43 H 0.108 0.892 44 H 0.093 0.907 45 H 0.114 0.886 46 H 0.102 0.898 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.246 -35.270 0.754 35.666 hybrid contribution 0.314 1.593 -0.375 1.666 sum -4.932 -33.677 0.379 34.038 Atomic orbital electron populations 1.69820 1.06604 1.26179 1.59073 1.25567 0.96381 1.01107 1.03446 0.85216 0.77214 0.79140 0.78190 1.20394 1.22075 1.20400 1.19609 0.91517 0.85413 1.41835 0.90669 1.42392 1.05725 1.00700 1.89414 1.21419 0.94297 0.85806 0.99126 1.22082 0.93527 0.91030 0.88368 0.87807 1.86552 1.38100 1.96196 1.15973 1.21879 0.92003 0.85000 1.03350 1.45568 1.11946 1.04230 1.73907 1.20549 0.89105 0.84453 0.75990 1.90742 1.18989 1.85142 1.50354 1.22615 0.93511 0.80734 1.06536 1.86087 1.35819 1.12763 1.88680 1.19017 0.90808 0.85702 0.97889 1.21430 0.91772 1.01064 1.08620 1.20747 1.00910 0.90369 0.96974 1.20958 0.94370 0.96228 1.03128 1.20673 0.94393 0.95102 0.96990 1.19956 1.00476 0.89543 1.08047 1.21173 0.99356 0.88774 1.02920 1.22328 0.92598 0.98861 1.01604 1.21062 0.98799 0.89113 1.02426 0.93971 0.79071 0.94901 0.95170 0.76540 0.90798 0.90559 0.74214 0.85963 0.85921 0.82818 0.83475 0.86136 0.90180 0.89210 0.90697 0.88633 0.89762 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.94 13.06 21.65 0.28 -58.66 16 2 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 3 Si 0.97 45.83 29.55 68.60 2.03 47.86 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 7 C -0.25 -13.97 9.99 84.03 0.84 -13.13 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.74 -36.72 5.55 -343.44 -1.91 -38.63 16 10 C 0.12 4.47 5.90 86.38 0.51 4.98 16 11 C 0.11 3.07 3.09 30.60 0.09 3.16 16 12 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 13 O -0.56 -15.82 13.03 -148.98 -1.94 -17.76 16 14 C 0.10 2.43 5.34 86.38 0.46 2.89 16 15 N -0.70 -13.88 5.45 -463.06 -2.52 -16.40 16 16 C 0.51 12.11 7.91 87.66 0.69 12.80 16 17 O -0.57 -19.58 16.50 16.00 0.26 -19.32 16 18 C 0.04 0.73 5.22 71.24 0.37 1.10 16 19 O -0.32 -7.73 9.67 -73.34 -0.71 -8.44 16 20 C 0.11 2.32 6.68 22.48 0.15 2.47 16 21 C -0.21 -3.24 9.04 22.34 0.20 -3.04 16 22 C -0.07 -1.00 10.03 22.29 0.22 -0.77 16 23 C -0.15 -2.14 6.14 -19.57 -0.12 -2.26 16 24 C -0.07 -1.21 6.13 -19.60 -0.12 -1.33 16 25 C -0.16 -3.38 9.98 22.40 0.22 -3.16 16 26 C -0.09 -0.94 6.77 30.52 0.21 -0.74 16 27 C -0.12 -0.87 7.08 31.51 0.22 -0.64 16 28 C -0.08 -0.68 6.77 30.53 0.21 -0.48 16 29 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 30 H 0.38 20.19 7.67 -92.71 -0.71 19.48 16 31 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.39 8.84 9.04 -74.06 -0.67 8.17 16 34 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.42 6.19 8.35 -92.71 -0.77 5.42 16 37 H 0.12 1.30 7.66 -2.39 -0.02 1.28 16 38 H 0.12 1.31 7.67 -2.39 -0.02 1.29 16 39 H 0.15 1.49 6.31 -2.91 -0.02 1.47 16 40 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 41 H 0.12 2.56 8.06 -2.91 -0.02 2.54 16 42 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 47 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -77.64 394.20 -1.02 -78.65 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: -1.14 Total: 34.52 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 4.63 Total: -1.83 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -4.15 Total: -113.68 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -2.39 Total: -45.51 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -77.64 -1.02 -78.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272575651.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.763 kcal (2) G-P(sol) polarization free energy of solvation -77.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.74 seconds