Wall clock time and date at job start Tue Mar 31 2020 21:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99927 * 2 1 4 4 H 1.48501 * 109.46982 * 239.99747 * 3 2 1 5 5 H 1.48494 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47083 * 119.99971 * 3 2 1 7 7 C 1.37876 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00227 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99708 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47220 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.47313 * 180.02562 * 10 9 7 12 12 C 1.46033 * 124.23457 * 270.71230 * 11 10 9 13 13 C 1.54448 * 105.95407 * 163.13332 * 12 11 10 14 14 F 1.39898 * 114.10277 * 147.28333 * 13 12 11 15 15 C 1.53684 * 108.86739 * 274.96479 * 13 12 11 16 16 N 1.47032 * 108.04620 * 124.15139 * 15 13 12 17 17 C 1.46896 * 111.00306 * 123.60811 * 16 15 13 18 18 C 1.52997 * 109.47114 * 170.00415 * 17 16 15 19 19 C 1.53006 * 109.47127 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.47127 * 180.02562 * 19 18 17 21 21 F 1.39895 * 109.47162 * 179.97438 * 20 19 18 22 22 C 1.47149 * 109.21424 * 0.90236 * 16 15 13 23 23 C 1.53842 * 106.75708 * 341.74600 * 22 16 15 24 24 F 1.39902 * 112.67054 * 150.08107 * 23 22 16 25 25 C 1.34374 * 124.33963 * 89.97446 * 11 10 9 26 26 O 1.21280 * 124.87071 * 0.38590 * 25 11 10 27 27 H 0.97007 * 120.00155 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.46797 * 60.00383 * 9 7 2 29 29 H 1.08999 * 109.47349 * 300.00396 * 9 7 2 30 30 H 1.08998 * 109.47264 * 60.00206 * 10 9 7 31 31 H 1.09007 * 109.47209 * 300.00080 * 10 9 7 32 32 H 1.09008 * 110.80993 * 43.57950 * 12 11 10 33 33 H 1.09002 * 109.29369 * 281.88172 * 12 11 10 34 34 H 1.08997 * 109.75947 * 4.50028 * 15 13 12 35 35 H 1.09003 * 109.75576 * 243.80102 * 15 13 12 36 36 H 1.08996 * 109.47194 * 50.00583 * 17 16 15 37 37 H 1.09001 * 109.47271 * 290.00146 * 17 16 15 38 38 H 1.09001 * 109.47502 * 60.00479 * 18 17 16 39 39 H 1.09001 * 109.47289 * 300.00275 * 18 17 16 40 40 H 1.09001 * 109.47002 * 299.99574 * 19 18 17 41 41 H 1.08993 * 109.46955 * 60.00011 * 19 18 17 42 42 H 1.09001 * 109.47289 * 299.99953 * 20 19 18 43 43 H 1.09004 * 109.47261 * 59.99697 * 20 19 18 44 44 H 1.09003 * 110.00045 * 101.07416 * 22 16 15 45 45 H 1.08999 * 110.00168 * 222.42398 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 6 1.0886 -5.6351 1.2057 13 6 0.0136 -6.6467 0.7512 14 9 -0.0044 -7.8329 1.4926 15 6 -1.3488 -5.9370 0.7054 16 7 -1.9021 -6.1002 -0.6471 17 6 -3.2291 -6.7286 -0.6008 18 6 -3.8761 -6.6563 -1.9853 19 6 -5.2585 -7.3102 -1.9370 20 6 -5.9054 -7.2385 -3.3217 21 9 -7.1691 -7.8369 -3.2776 22 6 -0.9691 -6.8974 -1.4590 23 6 0.3923 -6.8510 -0.7441 24 9 1.1541 -8.0044 -0.9596 25 6 1.1337 -5.5866 -1.1110 26 8 1.3547 -5.2166 -2.2447 27 1 -0.4851 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8904 29 1 0.6246 -2.5571 0.8896 30 1 2.8718 -3.6044 0.8894 31 1 2.8719 -3.6044 -0.8906 32 1 0.6683 -4.9397 1.9324 33 1 1.9420 -6.1598 1.6353 34 1 -1.2199 -4.8773 0.9253 35 1 -2.0226 -6.3854 1.4356 36 1 -3.8549 -6.2033 0.1206 37 1 -3.1269 -7.7717 -0.3016 38 1 -3.2504 -7.1817 -2.7068 39 1 -3.9783 -5.6132 -2.2846 40 1 -5.1567 -8.3534 -1.6376 41 1 -5.8841 -6.7846 -1.2157 42 1 -6.0071 -6.1955 -3.6216 43 1 -5.2796 -7.7645 -4.0427 44 1 -1.3199 -7.9272 -1.5267 45 1 -0.8812 -6.4668 -2.4565 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273755805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:39 Heat of formation + Delta-G solvation = -175.290456 kcal Electronic energy + Delta-G solvation = -30074.190793 eV Core-core repulsion = 25483.705065 eV Total energy + Delta-G solvation = -4590.485728 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.57431 -47.84827 -47.56769 -40.72569 -38.30326 -36.35998 -35.06047 -33.51443 -31.86590 -29.97461 -29.66398 -27.85166 -26.01068 -25.23547 -23.68141 -22.20544 -21.64013 -21.38306 -20.86941 -19.59924 -17.63337 -16.89130 -16.78257 -16.60570 -16.35902 -15.99307 -15.84086 -15.66582 -15.51323 -15.14889 -14.88640 -14.73879 -14.48942 -14.26919 -14.08940 -13.96760 -13.79814 -13.50577 -13.02248 -12.87918 -12.65647 -12.56652 -12.40845 -12.12123 -12.05508 -11.84564 -11.49709 -11.42178 -11.21715 -10.99644 -10.96978 -10.89180 -10.79964 -10.73183 -10.11047 -9.99389 -9.60976 -9.27003 -8.69331 -8.43351 -8.35053 -6.08420 -4.12612 2.50301 2.93014 3.23099 3.29259 3.34199 3.36658 3.41801 3.56727 3.66820 4.02202 4.21778 4.34062 4.39622 4.42910 4.48849 4.63109 4.79517 4.83654 4.94535 4.99015 5.11585 5.25723 5.27640 5.28059 5.35726 5.36249 5.43799 5.51628 5.57151 5.64583 5.73671 5.80844 5.84772 5.99502 6.28923 6.51148 6.58868 6.63057 6.66093 7.14331 7.53990 7.68255 7.88335 8.14897 8.29118 8.92943 9.51974 11.02542 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.010095 B = 0.003309 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2772.919891 B = 8459.562404 C =10264.264843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.013 3.987 10 C 0.127 3.873 11 N -0.593 5.593 12 C 0.092 3.908 13 C 0.066 3.934 14 F -0.169 7.169 15 C 0.032 3.968 16 N -0.514 5.514 17 C 0.052 3.948 18 C -0.118 4.118 19 C -0.151 4.151 20 C 0.060 3.940 21 F -0.222 7.222 22 C 0.039 3.961 23 C 0.059 3.941 24 F -0.163 7.163 25 C 0.520 3.480 26 O -0.495 6.495 27 H 0.262 0.738 28 H 0.025 0.975 29 H 0.018 0.982 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.551 -16.833 1.241 18.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.025 4.025 10 C 0.008 3.992 11 N -0.326 5.326 12 C -0.033 4.033 13 C 0.045 3.955 14 F -0.149 7.149 15 C -0.096 4.096 16 N -0.238 5.238 17 C -0.076 4.076 18 C -0.156 4.156 19 C -0.189 4.189 20 C 0.005 3.995 21 F -0.203 7.203 22 C -0.089 4.089 23 C 0.036 3.964 24 F -0.143 7.143 25 C 0.302 3.698 26 O -0.369 6.369 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.037 0.963 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.125 0.875 33 H 0.103 0.897 34 H 0.135 0.865 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.603 -16.008 0.425 17.727 hybrid contribution 0.561 -0.179 0.581 0.827 sum -7.042 -16.187 1.006 17.681 Atomic orbital electron populations 1.69954 1.06054 1.26908 1.49889 1.24976 0.94857 0.99275 0.94954 0.86615 0.79569 0.82891 0.78687 1.20129 1.21226 1.20190 1.20999 0.93015 0.90547 1.51935 0.92479 1.19418 0.94294 0.90769 0.98045 1.22024 0.95137 0.79830 1.02216 1.48243 1.55344 1.24196 1.04838 1.22337 0.96672 0.94508 0.89770 1.22869 0.99261 0.83443 0.89919 1.92910 1.97475 1.47036 1.77458 1.23359 0.91655 1.03077 0.91461 1.63201 1.02358 1.47698 1.10505 1.22413 0.89477 0.97346 0.98353 1.21498 0.94517 1.02572 0.96973 1.22120 0.97154 1.02458 0.97189 1.22021 0.80037 0.98763 0.98661 1.92759 1.43750 1.86074 1.97758 1.23145 0.87725 0.98546 0.99496 1.22721 0.93332 0.84305 0.96047 1.92922 1.76898 1.48918 1.95556 1.19953 0.79763 0.84422 0.85686 1.90752 1.55441 1.70077 1.20619 0.92804 0.95672 0.96320 0.90851 0.90376 0.87498 0.89684 0.86487 0.89838 0.89726 0.94094 0.91408 0.89961 0.90921 0.90506 0.90463 0.90757 0.90885 0.87059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.53 -14.22 9.11 -34.44 -0.31 -14.53 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.01 0.31 5.30 -27.88 -0.15 0.16 16 10 C 0.13 2.49 5.86 -4.05 -0.02 2.46 16 11 N -0.59 -10.18 2.91 -173.11 -0.50 -10.68 16 12 C 0.09 1.21 6.43 -3.53 -0.02 1.19 16 13 C 0.07 0.83 1.92 -88.12 -0.17 0.67 16 14 F -0.17 -2.13 17.08 2.25 0.04 -2.09 16 15 C 0.03 0.38 6.21 -3.40 -0.02 0.36 16 16 N -0.51 -6.26 5.12 -233.32 -1.19 -7.46 16 17 C 0.05 0.47 4.50 -3.83 -0.02 0.45 16 18 C -0.12 -0.96 5.24 -26.73 -0.14 -1.10 16 19 C -0.15 -1.07 5.67 -26.73 -0.15 -1.22 16 20 C 0.06 0.44 7.55 37.16 0.28 0.72 16 21 F -0.22 -2.26 17.36 2.25 0.04 -2.22 16 22 C 0.04 0.50 5.08 -3.25 -0.02 0.49 16 23 C 0.06 0.88 1.75 -89.76 -0.16 0.72 16 24 F -0.16 -2.50 16.99 2.25 0.04 -2.46 16 25 C 0.52 9.49 7.05 -10.97 -0.08 9.41 16 26 O -0.50 -10.80 17.25 5.56 0.10 -10.71 16 27 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.08 1.62 7.92 -51.93 -0.41 1.21 16 32 H 0.11 1.26 7.67 -51.92 -0.40 0.87 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.12 1.54 7.37 -51.93 -0.38 1.15 16 35 H 0.08 0.79 7.50 -51.93 -0.39 0.40 16 36 H 0.08 0.71 8.03 -51.93 -0.42 0.29 16 37 H 0.04 0.34 7.87 -51.93 -0.41 -0.06 16 38 H 0.07 0.54 7.46 -51.93 -0.39 0.16 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.79 7.54 -51.93 -0.39 0.40 16 45 H 0.11 1.53 7.73 -51.93 -0.40 1.13 16 LS Contribution 376.40 15.07 5.67 5.67 Total: -1.00 -31.91 376.40 -8.11 -40.02 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -6.93 Total: -2.38 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -1.08 Total: 1.38 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: -0.96 Total: -43.24 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.10 Total: -10.71 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 0.12 Total: -6.77 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.91 -8.11 -40.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273755805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.268 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds