Wall clock time and date at job start Tue Mar 31 2020 21:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99927 * 2 1 4 4 H 1.48501 * 109.46982 * 239.99747 * 3 2 1 5 5 H 1.48494 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47083 * 119.99971 * 3 2 1 7 7 C 1.37876 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00227 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99708 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47220 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.47313 * 180.02562 * 10 9 7 12 12 C 1.46033 * 124.23457 * 270.71230 * 11 10 9 13 13 C 1.54448 * 105.95407 * 163.13332 * 12 11 10 14 14 F 1.39898 * 114.10277 * 147.28333 * 13 12 11 15 15 C 1.53684 * 108.86739 * 274.96479 * 13 12 11 16 16 N 1.47032 * 108.04620 * 124.15139 * 15 13 12 17 17 C 1.46896 * 111.00306 * 123.60811 * 16 15 13 18 18 C 1.52997 * 109.47114 * 170.00415 * 17 16 15 19 19 C 1.53006 * 109.47127 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.47127 * 180.02562 * 19 18 17 21 21 F 1.39895 * 109.47162 * 179.97438 * 20 19 18 22 22 C 1.47149 * 109.21424 * 0.90236 * 16 15 13 23 23 C 1.53842 * 106.75708 * 341.74600 * 22 16 15 24 24 F 1.39902 * 112.67054 * 150.08107 * 23 22 16 25 25 C 1.34374 * 124.33963 * 89.97446 * 11 10 9 26 26 O 1.21280 * 124.87071 * 0.38590 * 25 11 10 27 27 H 0.97007 * 120.00155 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.46797 * 60.00383 * 9 7 2 29 29 H 1.08999 * 109.47349 * 300.00396 * 9 7 2 30 30 H 1.08998 * 109.47264 * 60.00206 * 10 9 7 31 31 H 1.09007 * 109.47209 * 300.00080 * 10 9 7 32 32 H 1.09008 * 110.80993 * 43.57950 * 12 11 10 33 33 H 1.09002 * 109.29369 * 281.88172 * 12 11 10 34 34 H 1.08997 * 109.75947 * 4.50028 * 15 13 12 35 35 H 1.09003 * 109.75576 * 243.80102 * 15 13 12 36 36 H 1.08996 * 109.47194 * 50.00583 * 17 16 15 37 37 H 1.09001 * 109.47271 * 290.00146 * 17 16 15 38 38 H 1.09001 * 109.47502 * 60.00479 * 18 17 16 39 39 H 1.09001 * 109.47289 * 300.00275 * 18 17 16 40 40 H 1.09001 * 109.47002 * 299.99574 * 19 18 17 41 41 H 1.08993 * 109.46955 * 60.00011 * 19 18 17 42 42 H 1.09001 * 109.47289 * 299.99953 * 20 19 18 43 43 H 1.09004 * 109.47261 * 59.99697 * 20 19 18 44 44 H 1.09003 * 110.00045 * 101.07416 * 22 16 15 45 45 H 1.08999 * 110.00168 * 222.42398 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 6 1.0886 -5.6351 1.2057 13 6 0.0136 -6.6467 0.7512 14 9 -0.0044 -7.8329 1.4926 15 6 -1.3488 -5.9370 0.7054 16 7 -1.9021 -6.1002 -0.6471 17 6 -3.2291 -6.7286 -0.6008 18 6 -3.8761 -6.6563 -1.9853 19 6 -5.2585 -7.3102 -1.9370 20 6 -5.9054 -7.2385 -3.3217 21 9 -7.1691 -7.8369 -3.2776 22 6 -0.9691 -6.8974 -1.4590 23 6 0.3923 -6.8510 -0.7441 24 9 1.1541 -8.0044 -0.9596 25 6 1.1337 -5.5866 -1.1110 26 8 1.3547 -5.2166 -2.2447 27 1 -0.4851 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8904 29 1 0.6246 -2.5571 0.8896 30 1 2.8718 -3.6044 0.8894 31 1 2.8719 -3.6044 -0.8906 32 1 0.6683 -4.9397 1.9324 33 1 1.9420 -6.1598 1.6353 34 1 -1.2199 -4.8773 0.9253 35 1 -2.0226 -6.3854 1.4356 36 1 -3.8549 -6.2033 0.1206 37 1 -3.1269 -7.7717 -0.3016 38 1 -3.2504 -7.1817 -2.7068 39 1 -3.9783 -5.6132 -2.2846 40 1 -5.1567 -8.3534 -1.6376 41 1 -5.8841 -6.7846 -1.2157 42 1 -6.0071 -6.1955 -3.6216 43 1 -5.2796 -7.7645 -4.0427 44 1 -1.3199 -7.9272 -1.5267 45 1 -0.8812 -6.4668 -2.4565 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273755805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:38 Heat of formation + Delta-G solvation = -195.102757 kcal Electronic energy + Delta-G solvation = -30075.049919 eV Core-core repulsion = 25483.705065 eV Total energy + Delta-G solvation = -4591.344854 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 4.53 seconds Orbital eigenvalues (eV) -49.69394 -48.67186 -48.55092 -41.97622 -39.39970 -37.75556 -36.06370 -35.22530 -33.33523 -31.22437 -30.89527 -28.89557 -27.19734 -26.81477 -24.74687 -23.50292 -22.70385 -22.41792 -21.87405 -20.98974 -18.78721 -18.67967 -17.95373 -17.64597 -17.41580 -16.98891 -16.81492 -16.66723 -16.56332 -16.38722 -16.31312 -15.77251 -15.66008 -15.54601 -15.13028 -15.09652 -14.89057 -14.62739 -14.41170 -14.35159 -14.14408 -13.66184 -13.59540 -13.35177 -13.02758 -12.90560 -12.83130 -12.73251 -12.56158 -12.29194 -12.06483 -11.90298 -11.87081 -11.82952 -11.61217 -11.45117 -11.40735 -10.94995 -10.55326 -9.86286 -9.57646 -8.20107 -6.31918 1.08275 1.42221 1.45307 1.52273 1.60506 2.13477 2.40066 2.43207 2.49045 2.59479 2.98408 3.14153 3.16800 3.40845 3.65350 3.86328 3.91132 3.99667 4.09127 4.20354 4.21179 4.25097 4.28294 4.34897 4.40804 4.51268 4.51729 4.61775 4.62886 4.71082 4.74235 4.84410 4.85159 5.02032 5.12259 5.20545 5.35309 5.42945 5.52154 5.62221 5.81081 5.82159 5.91370 6.16661 6.73022 6.84953 7.37502 8.91144 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.010095 B = 0.003309 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2772.919891 B = 8459.562404 C =10264.264843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.066 0.934 9 C 0.025 3.975 10 C 0.141 3.859 11 N -0.595 5.595 12 C 0.085 3.915 13 C 0.082 3.918 14 F -0.161 7.161 15 C 0.035 3.965 16 N -0.535 5.535 17 C 0.051 3.949 18 C -0.113 4.113 19 C -0.142 4.142 20 C 0.054 3.946 21 F -0.238 7.238 22 C 0.045 3.955 23 C 0.059 3.941 24 F -0.166 7.166 25 C 0.507 3.493 26 O -0.544 6.544 27 H 0.264 0.736 28 H -0.021 1.021 29 H 0.009 0.991 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.123 0.877 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.365 -17.680 2.814 19.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.084 0.916 9 C -0.013 4.013 10 C 0.020 3.980 11 N -0.326 5.326 12 C -0.038 4.038 13 C 0.061 3.939 14 F -0.141 7.141 15 C -0.093 4.093 16 N -0.260 5.260 17 C -0.076 4.076 18 C -0.151 4.151 19 C -0.180 4.180 20 C -0.001 4.001 21 F -0.219 7.219 22 C -0.083 4.083 23 C 0.036 3.964 24 F -0.146 7.146 25 C 0.292 3.708 26 O -0.421 6.421 27 H 0.072 0.928 28 H -0.002 1.002 29 H 0.028 0.972 30 H 0.121 0.879 31 H 0.080 0.920 32 H 0.141 0.859 33 H 0.128 0.872 34 H 0.118 0.882 35 H 0.131 0.869 36 H 0.112 0.888 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.116 0.884 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.417 -16.886 2.038 18.555 hybrid contribution 0.495 0.070 0.075 0.506 sum -6.922 -16.815 2.113 18.307 Atomic orbital electron populations 1.70088 1.07722 1.27847 1.50956 1.25899 0.95709 1.03168 0.94510 0.85527 0.78286 0.78200 0.79191 1.19777 1.21031 1.18577 1.21482 0.93753 0.91735 1.51440 0.91560 1.19197 0.94407 0.92379 0.95278 1.21636 0.93984 0.79466 1.02866 1.48236 1.54703 1.23370 1.06316 1.22651 0.97983 0.94907 0.88275 1.22698 0.99539 0.83392 0.88228 1.92932 1.97469 1.46675 1.77064 1.23328 0.91751 1.02176 0.92054 1.63139 1.03424 1.48659 1.10733 1.22509 0.87914 0.98143 0.98996 1.21435 0.95170 1.01842 0.96679 1.22020 0.96248 1.02726 0.97015 1.22190 0.79388 0.99223 0.99290 1.92725 1.44976 1.86392 1.97846 1.23081 0.86848 0.99842 0.98574 1.22690 0.93343 0.82351 0.98023 1.92915 1.77164 1.48735 1.95756 1.20636 0.79361 0.85646 0.85201 1.90711 1.57261 1.71636 1.22491 0.92765 1.00240 0.97223 0.87872 0.91952 0.85897 0.87243 0.88239 0.86913 0.88821 0.92483 0.91300 0.91409 0.90176 0.90416 0.89919 0.89502 0.88406 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.80 13.29 21.45 0.28 -54.51 16 2 C 0.01 0.33 5.46 84.66 0.46 0.79 16 3 Si 0.96 43.01 29.54 68.60 2.03 45.03 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.55 -29.72 9.11 25.60 0.23 -29.48 16 8 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.03 1.27 5.30 29.85 0.16 1.43 16 10 C 0.14 5.54 5.86 86.38 0.51 6.04 16 11 N -0.59 -20.30 2.91 -820.20 -2.39 -22.68 16 12 C 0.09 2.07 6.43 86.96 0.56 2.63 16 13 C 0.08 1.92 1.92 -9.18 -0.02 1.90 16 14 F -0.16 -3.55 17.08 44.97 0.77 -2.78 16 15 C 0.03 0.76 6.21 86.51 0.54 1.29 16 16 N -0.54 -12.50 5.12 -892.09 -4.57 -17.07 16 17 C 0.05 0.83 4.50 86.30 0.39 1.22 16 18 C -0.11 -1.72 5.24 30.60 0.16 -1.56 16 19 C -0.14 -1.78 5.67 30.60 0.17 -1.61 16 20 C 0.05 0.73 7.55 71.98 0.54 1.28 16 21 F -0.24 -4.64 17.36 44.97 0.78 -3.86 16 22 C 0.04 1.12 5.08 86.54 0.44 1.55 16 23 C 0.06 1.70 1.75 -10.24 -0.02 1.68 16 24 F -0.17 -4.88 16.99 44.97 0.76 -4.12 16 25 C 0.51 18.87 7.05 87.84 0.62 19.49 16 26 O -0.54 -24.86 17.25 -3.03 -0.05 -24.92 16 27 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 28 H -0.02 -1.23 8.14 -2.38 -0.02 -1.25 16 29 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 31 H 0.06 2.65 7.92 -2.38 -0.02 2.63 16 32 H 0.12 2.65 7.67 -2.38 -0.02 2.63 16 33 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.10 2.55 7.37 -2.39 -0.02 2.53 16 35 H 0.11 1.78 7.50 -2.39 -0.02 1.77 16 36 H 0.09 1.36 8.03 -2.39 -0.02 1.35 16 37 H 0.06 0.77 7.87 -2.39 -0.02 0.75 16 38 H 0.07 1.03 7.46 -2.39 -0.02 1.01 16 39 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 43 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 44 H 0.10 1.91 7.54 -2.39 -0.02 1.89 16 45 H 0.09 2.65 7.73 -2.39 -0.02 2.63 16 Total: -1.00 -70.56 376.40 3.35 -67.21 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.99 Total: 11.03 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 4.75 Total: 6.67 kcal Atomic # 7 Polarization: -87.59 SS G_CDS: -6.67 Total: -94.26 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.05 Total: -24.92 kcal Atomic # 9 Polarization: -13.08 SS G_CDS: 2.31 Total: -10.77 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -70.56 3.35 -67.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273755805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.894 kcal (2) G-P(sol) polarization free energy of solvation -70.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.54 seconds