Wall clock time and date at job start Tue Mar 31 2020 21:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00089 * 2 1 4 4 H 1.48501 * 109.47291 * 270.00246 * 3 2 1 5 5 H 1.48504 * 109.46989 * 30.00106 * 3 2 1 6 6 H 1.48498 * 109.47361 * 150.00280 * 3 2 1 7 7 C 1.37873 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99798 * 0.02562 * 7 2 1 10 10 N 1.47027 * 109.47048 * 179.97438 * 9 7 2 11 11 C 1.48185 * 110.66031 * 66.04267 * 10 9 7 12 12 C 1.50792 * 106.58082 * 154.88773 * 11 10 9 13 13 C 1.53258 * 112.41730 * 96.47611 * 12 11 10 14 14 C 1.53876 * 113.82322 * 304.13296 * 13 12 11 15 15 C 1.55478 * 107.27513 * 215.59196 * 14 13 12 16 16 C 1.54545 * 100.99949 * 215.48690 * 15 14 13 17 17 N 1.46813 * 104.92547 * 29.40245 * 16 15 14 18 18 C 1.46432 * 124.52354 * 161.96559 * 17 16 15 19 19 C 1.53005 * 109.46883 * 90.00555 * 18 17 16 20 20 F 1.39897 * 109.47129 * 59.99463 * 19 18 17 21 21 F 1.39892 * 109.47365 * 180.02562 * 19 18 17 22 22 F 1.39905 * 109.46775 * 300.00172 * 19 18 17 23 23 C 1.34525 * 111.10354 * 341.91266 * 17 16 15 24 24 O 1.21179 * 124.78544 * 177.27610 * 23 17 16 25 25 C 1.48998 * 115.76881 * 338.38208 * 14 13 12 26 26 C 1.38539 * 111.64271 * 297.50786 * 10 9 7 27 27 H 0.97000 * 119.99607 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47131 * 60.00016 * 9 7 2 29 29 H 1.08993 * 109.47180 * 299.99525 * 9 7 2 30 30 H 1.08382 * 110.08935 * 275.20504 * 11 10 9 31 31 H 1.09017 * 109.16461 * 36.39556 * 11 10 9 32 32 H 1.09254 * 108.86598 * 217.60985 * 12 11 10 33 33 H 1.09237 * 108.71620 * 335.46426 * 12 11 10 34 34 H 1.09476 * 108.72692 * 183.04698 * 13 12 11 35 35 H 1.09327 * 108.94281 * 65.52388 * 13 12 11 36 36 H 1.08774 * 110.60880 * 333.24980 * 15 14 13 37 37 H 1.08732 * 110.76251 * 97.61587 * 15 14 13 38 38 H 1.08915 * 110.45428 * 148.27421 * 16 15 14 39 39 H 1.08933 * 110.37396 * 270.65955 * 16 15 14 40 40 H 1.09004 * 109.47507 * 210.00253 * 18 17 16 41 41 H 1.08998 * 109.47317 * 330.01067 * 18 17 16 42 42 H 1.10231 * 109.31364 * 314.23903 * 25 14 13 43 43 H 1.10397 * 108.96647 * 199.02925 * 25 14 13 44 44 H 1.10154 * 108.14027 * 312.19290 * 26 10 9 45 45 H 1.09797 * 108.54648 * 66.84446 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2063 -3.6167 0.0005 11 6 2.9740 -3.6483 1.2676 12 6 3.4241 -5.0742 1.4627 13 6 4.8542 -5.3090 0.9645 14 6 5.0709 -4.9206 -0.5086 15 6 6.0764 -5.9415 -1.1121 16 6 6.8708 -5.0358 -2.0801 17 7 6.8277 -3.7010 -1.4703 18 6 7.7368 -2.6041 -1.8089 19 6 7.1405 -1.7824 -2.9536 20 9 5.9051 -1.2590 -2.5576 21 9 8.0092 -0.7349 -3.2776 22 9 6.9621 -2.6028 -4.0728 23 6 5.8416 -3.6164 -0.5592 24 8 5.6147 -2.6426 0.1255 25 6 3.8435 -4.8672 -1.3517 26 6 2.9904 -3.6186 -1.1416 27 1 -0.4849 0.8401 0.0004 28 1 0.6246 -2.5570 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 3.8249 -2.9800 1.2041 31 1 2.3213 -3.3520 2.0890 32 1 3.3689 -5.3197 2.5259 33 1 2.7423 -5.7341 0.9213 34 1 5.0984 -6.3695 1.0841 35 1 5.5452 -4.7306 1.5836 36 1 6.7214 -6.3479 -0.3363 37 1 5.5517 -6.7271 -1.6504 38 1 7.9008 -5.3798 -2.1644 39 1 6.3948 -5.0181 -3.0598 40 1 7.8758 -1.9650 -0.9369 41 1 8.6993 -3.0120 -2.1176 42 1 3.2309 -5.7636 -1.1609 43 1 4.1358 -4.9231 -2.4148 44 1 2.3281 -3.4915 -2.0125 45 1 3.6391 -2.7330 -1.1214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:32 Heat of formation + Delta-G solvation = -175.816839 kcal Electronic energy + Delta-G solvation = -32217.137200 eV Core-core repulsion = 27626.628646 eV Total energy + Delta-G solvation = -4590.508554 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 12.60 seconds Orbital eigenvalues (eV) -50.06611 -47.65184 -47.47448 -41.24674 -37.85672 -36.55769 -34.89508 -32.63399 -32.00699 -30.58094 -28.45217 -27.51898 -25.45769 -25.05882 -23.74866 -22.55018 -22.02805 -20.75624 -19.48886 -18.71580 -18.52557 -18.18132 -17.76091 -16.58458 -16.24369 -15.89230 -15.44636 -14.79507 -14.64738 -14.53065 -14.47871 -14.35178 -14.02450 -13.99900 -13.83349 -13.68486 -13.64676 -13.45536 -12.88377 -12.80587 -12.63067 -12.51259 -12.31543 -12.24937 -11.91464 -11.82210 -11.42827 -11.30147 -10.82652 -10.68449 -10.42715 -10.27904 -10.20661 -10.06032 -9.80383 -9.64928 -9.34882 -9.29020 -9.04996 -8.27955 -6.86622 -5.86786 -3.94227 2.36010 2.59327 2.92940 3.39302 3.44719 3.53062 3.74525 3.84689 4.17616 4.20868 4.27737 4.56394 4.62865 4.76850 4.79124 4.96996 5.12616 5.17772 5.19360 5.35402 5.41905 5.47182 5.58872 5.68313 5.77001 5.84748 5.97162 6.07062 6.14551 6.18268 6.32272 6.42502 6.59859 6.70022 6.82258 6.86287 7.02361 7.24627 7.52371 7.68820 8.07268 8.20480 8.28448 8.47918 8.77656 9.19486 9.72651 11.17502 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.010187 B = 0.006156 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.955819 B = 4547.507354 C = 6511.122150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.063 3.937 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.195 3.805 10 N -0.555 5.555 11 C 0.060 3.940 12 C -0.115 4.115 13 C -0.094 4.094 14 C -0.071 4.071 15 C -0.129 4.129 16 C 0.103 3.897 17 N -0.630 5.630 18 C 0.090 3.910 19 C 0.428 3.572 20 F -0.165 7.165 21 F -0.185 7.185 22 F -0.185 7.185 23 C 0.526 3.474 24 O -0.482 6.482 25 C -0.096 4.096 26 C 0.082 3.918 27 H 0.259 0.741 28 H 0.025 0.975 29 H 0.030 0.970 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.078 0.922 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.040 -14.099 -4.505 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.138 4.138 3 Si 0.712 3.288 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.071 3.929 10 N -0.278 5.278 11 C -0.068 4.068 12 C -0.153 4.153 13 C -0.132 4.132 14 C -0.074 4.074 15 C -0.167 4.167 16 C -0.020 4.020 17 N -0.366 5.366 18 C -0.035 4.035 19 C 0.372 3.628 20 F -0.147 7.147 21 F -0.167 7.167 22 F -0.167 7.167 23 C 0.313 3.687 24 O -0.352 6.352 25 C -0.134 4.134 26 C -0.049 4.049 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.143 0.857 41 H 0.139 0.861 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 17.531 -13.789 -4.178 22.692 hybrid contribution 0.908 2.042 -0.487 2.287 sum 18.438 -11.746 -4.664 22.354 Atomic orbital electron populations 1.69955 1.05934 1.26507 1.51231 1.24929 0.94679 0.98984 0.95238 0.86708 0.80165 0.83830 0.78103 1.20816 1.21310 1.19784 1.21884 0.93861 0.91900 1.50209 0.91902 1.19736 0.90355 0.85301 0.97554 1.59256 1.20180 1.47445 1.00956 1.21797 0.97979 0.94526 0.92449 1.21412 0.94691 0.99398 0.99777 1.21848 0.99022 1.00319 0.91989 1.20990 0.95848 0.92268 0.98314 1.23124 0.97375 0.97365 0.98825 1.22210 1.01508 0.80974 0.97269 1.48227 1.34096 1.12237 1.42030 1.22381 0.93861 0.90414 0.96876 1.21404 0.77699 0.79280 0.84459 1.93335 1.43770 1.87236 1.90331 1.93176 1.69726 1.60119 1.93662 1.93163 1.95529 1.72256 1.55749 1.21208 0.79206 0.89976 0.78274 1.90765 1.66772 1.35007 1.42689 1.20943 0.93926 1.01244 0.97286 1.20147 0.95910 0.94467 0.94335 0.93093 0.95641 0.95217 0.91644 0.91955 0.92777 0.90981 0.91893 0.92216 0.89750 0.88647 0.90136 0.90621 0.85668 0.86142 0.90385 0.92257 0.92573 0.95244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.67 13.29 55.43 0.74 -26.93 16 2 C 0.06 1.89 5.46 -17.82 -0.10 1.79 16 3 Si 0.88 23.32 29.54 -169.99 -5.02 18.30 16 4 H -0.28 -7.40 7.11 56.52 0.40 -6.99 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.27 -7.26 7.11 56.52 0.40 -6.85 16 7 C -0.54 -15.89 7.91 -34.44 -0.27 -16.17 16 8 H 0.06 1.93 6.32 -52.49 -0.33 1.60 16 9 C 0.20 5.28 4.95 -4.90 -0.02 5.26 16 10 N -0.55 -12.30 4.11 -242.28 -1.00 -13.30 16 11 C 0.06 1.23 4.78 -4.22 -0.02 1.21 16 12 C -0.11 -1.78 5.31 -27.70 -0.15 -1.93 16 13 C -0.09 -1.22 4.80 -26.14 -0.13 -1.35 16 14 C -0.07 -0.92 0.49 -155.42 -0.08 -0.99 16 15 C -0.13 -1.05 5.79 -24.60 -0.14 -1.19 16 16 C 0.10 0.83 6.92 -3.06 -0.02 0.81 16 17 N -0.63 -7.38 2.81 -172.31 -0.48 -7.87 16 18 C 0.09 0.93 5.93 -4.08 -0.02 0.90 16 19 C 0.43 5.64 3.29 37.16 0.12 5.76 16 20 F -0.17 -3.03 16.95 2.25 0.04 -2.99 16 21 F -0.19 -2.37 17.32 2.25 0.04 -2.33 16 22 F -0.19 -2.36 17.12 2.25 0.04 -2.32 16 23 C 0.53 8.17 5.10 -10.66 -0.05 8.11 16 24 O -0.48 -9.77 13.80 5.64 0.08 -9.69 16 25 C -0.10 -1.41 4.00 -28.86 -0.12 -1.53 16 26 C 0.08 1.69 4.25 -8.26 -0.04 1.66 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.03 0.73 7.96 -51.93 -0.41 0.32 16 29 H 0.03 0.85 7.90 -51.93 -0.41 0.44 16 30 H 0.07 1.50 4.77 -52.28 -0.25 1.25 16 31 H 0.06 1.36 7.72 -51.92 -0.40 0.96 16 32 H 0.05 0.76 8.16 -51.79 -0.42 0.33 16 33 H 0.07 1.12 7.00 -51.79 -0.36 0.75 16 34 H 0.06 0.63 7.48 -51.66 -0.39 0.24 16 35 H 0.06 0.84 7.48 -51.74 -0.39 0.45 16 36 H 0.08 0.57 7.60 -52.06 -0.40 0.18 16 37 H 0.10 0.62 7.89 -52.08 -0.41 0.21 16 38 H 0.08 0.42 8.13 -51.98 -0.42 0.00 16 39 H 0.08 0.62 8.00 -51.97 -0.42 0.20 16 40 H 0.13 1.33 7.90 -51.93 -0.41 0.92 16 41 H 0.12 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.08 1.07 7.50 -51.23 -0.38 0.69 16 43 H 0.06 0.77 7.64 -51.13 -0.39 0.38 16 44 H 0.06 1.22 7.90 -51.27 -0.40 0.81 16 45 H 0.03 0.71 4.69 -51.48 -0.24 0.47 16 LS Contribution 353.71 15.07 5.33 5.33 Total: -1.00 -34.84 353.71 -7.67 -42.51 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -6.40 Total: -3.07 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -1.03 Total: 2.35 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: -0.74 Total: -48.10 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.08 Total: -9.69 kcal Atomic # 9 Polarization: -7.75 SS G_CDS: 0.12 Total: -7.63 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -5.02 Total: 18.30 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.84 -7.67 -42.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.308 kcal (2) G-P(sol) polarization free energy of solvation -34.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.60 seconds