Wall clock time and date at job start Tue Mar 31 2020 21:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00089 * 2 1 4 4 H 1.48501 * 109.47291 * 270.00246 * 3 2 1 5 5 H 1.48504 * 109.46989 * 30.00106 * 3 2 1 6 6 H 1.48498 * 109.47361 * 150.00280 * 3 2 1 7 7 C 1.37873 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99798 * 0.02562 * 7 2 1 10 10 N 1.47027 * 109.47048 * 179.97438 * 9 7 2 11 11 C 1.48185 * 110.66031 * 66.04267 * 10 9 7 12 12 C 1.50792 * 106.58082 * 154.88773 * 11 10 9 13 13 C 1.53258 * 112.41730 * 96.47611 * 12 11 10 14 14 C 1.53876 * 113.82322 * 304.13296 * 13 12 11 15 15 C 1.55478 * 107.27513 * 215.59196 * 14 13 12 16 16 C 1.54545 * 100.99949 * 215.48690 * 15 14 13 17 17 N 1.46813 * 104.92547 * 29.40245 * 16 15 14 18 18 C 1.46432 * 124.52354 * 161.96559 * 17 16 15 19 19 C 1.53005 * 109.46883 * 90.00555 * 18 17 16 20 20 F 1.39897 * 109.47129 * 59.99463 * 19 18 17 21 21 F 1.39892 * 109.47365 * 180.02562 * 19 18 17 22 22 F 1.39905 * 109.46775 * 300.00172 * 19 18 17 23 23 C 1.34525 * 111.10354 * 341.91266 * 17 16 15 24 24 O 1.21179 * 124.78544 * 177.27610 * 23 17 16 25 25 C 1.48998 * 115.76881 * 338.38208 * 14 13 12 26 26 C 1.38539 * 111.64271 * 297.50786 * 10 9 7 27 27 H 0.97000 * 119.99607 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47131 * 60.00016 * 9 7 2 29 29 H 1.08993 * 109.47180 * 299.99525 * 9 7 2 30 30 H 1.08382 * 110.08935 * 275.20504 * 11 10 9 31 31 H 1.09017 * 109.16461 * 36.39556 * 11 10 9 32 32 H 1.09254 * 108.86598 * 217.60985 * 12 11 10 33 33 H 1.09237 * 108.71620 * 335.46426 * 12 11 10 34 34 H 1.09476 * 108.72692 * 183.04698 * 13 12 11 35 35 H 1.09327 * 108.94281 * 65.52388 * 13 12 11 36 36 H 1.08774 * 110.60880 * 333.24980 * 15 14 13 37 37 H 1.08732 * 110.76251 * 97.61587 * 15 14 13 38 38 H 1.08915 * 110.45428 * 148.27421 * 16 15 14 39 39 H 1.08933 * 110.37396 * 270.65955 * 16 15 14 40 40 H 1.09004 * 109.47507 * 210.00253 * 18 17 16 41 41 H 1.08998 * 109.47317 * 330.01067 * 18 17 16 42 42 H 1.10231 * 109.31364 * 314.23903 * 25 14 13 43 43 H 1.10397 * 108.96647 * 199.02925 * 25 14 13 44 44 H 1.10154 * 108.14027 * 312.19290 * 26 10 9 45 45 H 1.09797 * 108.54648 * 66.84446 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2063 -3.6167 0.0005 11 6 2.9740 -3.6483 1.2676 12 6 3.4241 -5.0742 1.4627 13 6 4.8542 -5.3090 0.9645 14 6 5.0709 -4.9206 -0.5086 15 6 6.0764 -5.9415 -1.1121 16 6 6.8708 -5.0358 -2.0801 17 7 6.8277 -3.7010 -1.4703 18 6 7.7368 -2.6041 -1.8089 19 6 7.1405 -1.7824 -2.9536 20 9 5.9051 -1.2590 -2.5576 21 9 8.0092 -0.7349 -3.2776 22 9 6.9621 -2.6028 -4.0728 23 6 5.8416 -3.6164 -0.5592 24 8 5.6147 -2.6426 0.1255 25 6 3.8435 -4.8672 -1.3517 26 6 2.9904 -3.6186 -1.1416 27 1 -0.4849 0.8401 0.0004 28 1 0.6246 -2.5570 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 3.8249 -2.9800 1.2041 31 1 2.3213 -3.3520 2.0890 32 1 3.3689 -5.3197 2.5259 33 1 2.7423 -5.7341 0.9213 34 1 5.0984 -6.3695 1.0841 35 1 5.5452 -4.7306 1.5836 36 1 6.7214 -6.3479 -0.3363 37 1 5.5517 -6.7271 -1.6504 38 1 7.9008 -5.3798 -2.1644 39 1 6.3948 -5.0181 -3.0598 40 1 7.8758 -1.9650 -0.9369 41 1 8.6993 -3.0120 -2.1176 42 1 3.2309 -5.7636 -1.1609 43 1 4.1358 -4.9231 -2.4148 44 1 2.3281 -3.4915 -2.0125 45 1 3.6391 -2.7330 -1.1214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:31 Heat of formation + Delta-G solvation = -200.115496 kcal Electronic energy + Delta-G solvation = -32218.190869 eV Core-core repulsion = 27626.628646 eV Total energy + Delta-G solvation = -4591.562222 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 5.67 seconds Orbital eigenvalues (eV) -51.15988 -48.70362 -48.66188 -42.28993 -39.40458 -37.67670 -36.20475 -34.60096 -33.47293 -31.78430 -29.70472 -28.87955 -27.12980 -26.43117 -24.83870 -24.32862 -23.04840 -21.98146 -21.08142 -19.78163 -19.60063 -19.28534 -18.80462 -18.59234 -17.34859 -17.18710 -16.88139 -16.36258 -16.18911 -15.90917 -15.61974 -15.55624 -15.28654 -15.10209 -15.07644 -14.83658 -14.81471 -14.73193 -14.39275 -14.09945 -13.80104 -13.67298 -13.53958 -13.41805 -13.28298 -13.15671 -12.97202 -12.73548 -12.59232 -12.53006 -12.13709 -11.84676 -11.80672 -11.55568 -11.46965 -11.30019 -11.03592 -10.65203 -10.51867 -9.96296 -8.85851 -8.16909 -6.36897 1.23920 1.24493 1.34697 1.37787 1.70546 1.90432 2.30957 2.78511 2.92612 3.03184 3.16956 3.22736 3.46056 3.50746 3.81864 3.94863 4.04518 4.12907 4.20148 4.30629 4.36659 4.44066 4.57915 4.63383 4.67783 4.76801 4.89314 4.99495 5.05229 5.12317 5.16067 5.22984 5.27909 5.30550 5.30881 5.33783 5.40516 5.48488 5.67007 5.74190 5.95232 6.09559 6.32341 6.83263 6.97895 7.14759 7.33823 8.81986 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.010187 B = 0.006156 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.955819 B = 4547.507354 C = 6511.122150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.015 3.985 3 Si 0.945 3.055 4 H -0.277 1.277 5 H -0.269 1.269 6 H -0.280 1.280 7 C -0.546 4.546 8 H 0.044 0.956 9 C 0.207 3.793 10 N -0.543 5.543 11 C 0.061 3.939 12 C -0.108 4.108 13 C -0.090 4.090 14 C -0.081 4.081 15 C -0.110 4.110 16 C 0.094 3.906 17 N -0.626 5.626 18 C 0.093 3.907 19 C 0.421 3.579 20 F -0.204 7.204 21 F -0.184 7.184 22 F -0.181 7.181 23 C 0.512 3.488 24 O -0.546 6.546 25 C -0.086 4.086 26 C 0.087 3.913 27 H 0.265 0.735 28 H 0.000 1.000 29 H 0.006 0.994 30 H 0.040 0.960 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.046 0.954 36 H 0.109 0.891 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.077 0.923 40 H 0.115 0.885 41 H 0.175 0.825 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.031 0.969 45 H -0.011 1.011 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.916 -17.165 -5.232 27.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.184 4.184 3 Si 0.770 3.230 4 H -0.202 1.202 5 H -0.193 1.193 6 H -0.205 1.205 7 C -0.585 4.585 8 H 0.062 0.938 9 C 0.081 3.919 10 N -0.266 5.266 11 C -0.066 4.066 12 C -0.146 4.146 13 C -0.128 4.128 14 C -0.085 4.085 15 C -0.147 4.147 16 C -0.026 4.026 17 N -0.361 5.361 18 C -0.032 4.032 19 C 0.366 3.634 20 F -0.186 7.186 21 F -0.166 7.166 22 F -0.163 7.163 23 C 0.301 3.699 24 O -0.421 6.421 25 C -0.124 4.124 26 C -0.044 4.044 27 H 0.074 0.926 28 H 0.018 0.982 29 H 0.024 0.976 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.128 0.872 35 H 0.064 0.936 36 H 0.127 0.873 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.095 0.905 40 H 0.133 0.867 41 H 0.192 0.808 42 H 0.118 0.882 43 H 0.099 0.901 44 H 0.049 0.951 45 H 0.007 0.993 Dipole moment (debyes) X Y Z Total from point charges 20.438 -16.898 -4.939 26.975 hybrid contribution 0.006 3.036 -0.321 3.053 sum 20.444 -13.863 -5.260 25.255 Atomic orbital electron populations 1.70040 1.07023 1.27650 1.51697 1.25676 0.95604 1.02231 0.94926 0.85766 0.78669 0.80240 0.78305 1.20242 1.19321 1.20535 1.21978 0.93019 0.93360 1.50172 0.93773 1.19409 0.90925 0.86560 0.95013 1.59310 1.20293 1.44448 1.02513 1.21825 0.96149 0.98096 0.90500 1.21311 0.96842 0.95046 1.01382 1.21855 0.96340 1.02870 0.91714 1.21061 0.95924 0.92947 0.98540 1.23179 0.95980 0.96323 0.99256 1.22607 1.04276 0.78807 0.96956 1.48381 1.32987 1.13846 1.40838 1.22624 0.95308 0.90017 0.95300 1.21966 0.76389 0.79540 0.85544 1.93264 1.46582 1.87961 1.90795 1.93170 1.69309 1.60356 1.93752 1.93161 1.95472 1.71914 1.55737 1.21810 0.79848 0.90058 0.78189 1.90730 1.68586 1.37345 1.45466 1.20817 0.94129 0.98188 0.99244 1.20233 0.95030 0.96653 0.92472 0.92564 0.98153 0.97550 0.94124 0.94490 0.90983 0.90292 0.87189 0.93565 0.87267 0.85827 0.85898 0.90458 0.86694 0.80760 0.88221 0.90068 0.95076 0.99326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.02 13.29 21.45 0.28 -58.73 16 2 C 0.01 0.91 5.46 84.65 0.46 1.37 16 3 Si 0.94 49.81 29.54 68.60 2.03 51.84 16 4 H -0.28 -14.28 7.11 99.48 0.71 -13.57 16 5 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.28 -14.99 7.11 99.48 0.71 -14.28 16 7 C -0.55 -34.26 7.91 25.60 0.20 -34.06 16 8 H 0.04 2.92 6.32 -2.91 -0.02 2.90 16 9 C 0.21 12.01 4.95 85.53 0.42 12.43 16 10 N -0.54 -25.31 4.11 -920.44 -3.78 -29.10 16 11 C 0.06 2.65 4.78 85.34 0.41 3.05 16 12 C -0.11 -3.21 5.31 29.96 0.16 -3.05 16 13 C -0.09 -2.07 4.80 30.98 0.15 -1.92 16 14 C -0.08 -1.89 0.49 -52.77 -0.03 -1.91 16 15 C -0.11 -1.14 5.79 31.97 0.19 -0.95 16 16 C 0.09 1.04 6.92 86.85 0.60 1.64 16 17 N -0.63 -13.17 2.81 -817.64 -2.30 -15.46 16 18 C 0.09 1.73 5.93 86.39 0.51 2.24 16 19 C 0.42 10.90 3.29 71.98 0.24 11.14 16 20 F -0.20 -7.88 16.95 44.97 0.76 -7.11 16 21 F -0.18 -4.61 17.32 44.97 0.78 -3.83 16 22 F -0.18 -4.33 17.12 44.97 0.77 -3.56 16 23 C 0.51 15.59 5.10 87.98 0.45 16.04 16 24 O -0.55 -23.29 13.80 -2.72 -0.04 -23.33 16 25 C -0.09 -2.38 4.00 29.21 0.12 -2.26 16 26 C 0.09 3.73 4.25 87.69 0.37 4.10 16 27 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 28 H 0.00 0.02 7.96 -2.39 -0.02 0.00 16 29 H 0.01 0.39 7.90 -2.39 -0.02 0.37 16 30 H 0.04 1.99 4.77 -2.71 -0.01 1.98 16 31 H 0.04 1.72 7.72 -2.38 -0.02 1.70 16 32 H 0.07 1.89 8.16 -2.25 -0.02 1.87 16 33 H 0.08 2.25 7.00 -2.26 -0.02 2.24 16 34 H 0.11 1.55 7.48 -2.13 -0.02 1.53 16 35 H 0.05 1.21 7.48 -2.21 -0.02 1.19 16 36 H 0.11 0.69 7.60 -2.51 -0.02 0.67 16 37 H 0.12 0.69 7.89 -2.53 -0.02 0.67 16 38 H 0.12 0.42 8.13 -2.43 -0.02 0.40 16 39 H 0.08 0.89 8.00 -2.42 -0.02 0.87 16 40 H 0.11 2.42 7.90 -2.38 -0.02 2.40 16 41 H 0.17 1.29 8.14 -2.39 -0.02 1.28 16 42 H 0.10 2.38 7.50 -1.73 -0.01 2.37 16 43 H 0.08 1.90 7.64 -1.64 -0.01 1.89 16 44 H 0.03 1.43 7.90 -1.77 -0.01 1.42 16 45 H -0.01 -0.58 4.69 -1.96 -0.01 -0.59 16 Total: -1.00 -85.39 353.71 3.79 -81.60 By element: Atomic # 1 Polarization: -1.20 SS G_CDS: 1.03 Total: -0.17 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 4.25 Total: 7.86 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -5.79 Total: -103.29 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.04 Total: -23.33 kcal Atomic # 9 Polarization: -16.82 SS G_CDS: 2.31 Total: -14.51 kcal Atomic # 14 Polarization: 49.81 SS G_CDS: 2.03 Total: 51.84 kcal Total: -85.39 3.79 -81.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.515 kcal (2) G-P(sol) polarization free energy of solvation -85.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.67 seconds