Wall clock time and date at job start Tue Mar 31 2020 21:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99887 * 2 1 4 4 H 1.48495 * 109.47317 * 239.99676 * 3 2 1 5 5 H 1.48507 * 109.47083 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47015 * 119.99429 * 3 2 1 7 7 C 1.37872 * 120.00310 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00142 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99945 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47461 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47437 * 179.97438 * 10 9 7 12 12 C 1.48730 * 111.00018 * 59.94819 * 11 10 9 13 13 C 1.55001 * 103.35163 * 158.81758 * 12 11 10 14 14 C 1.54799 * 102.94230 * 323.04071 * 13 12 11 15 15 C 1.47079 * 111.00003 * 177.10317 * 11 10 9 16 16 C 1.53869 * 110.71126 * 93.72434 * 15 11 10 17 17 C 1.54808 * 101.50935 * 215.40446 * 16 15 11 18 18 N 1.46847 * 105.42851 * 25.07085 * 17 16 15 19 19 C 1.46498 * 124.37433 * 163.03718 * 18 17 16 20 20 C 1.52998 * 109.46943 * 269.69964 * 19 18 17 21 21 C 1.52999 * 109.47303 * 179.97438 * 20 19 18 22 22 F 1.39899 * 109.47088 * 59.99874 * 21 20 19 23 23 F 1.39906 * 109.47106 * 179.97438 * 21 20 19 24 24 F 1.39900 * 109.47045 * 299.99861 * 21 20 19 25 25 C 1.34673 * 111.26142 * 342.76375 * 18 17 16 26 26 O 1.21277 * 125.08174 * 181.07749 * 25 18 17 27 27 H 0.97001 * 120.00096 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47246 * 59.99218 * 9 7 2 29 29 H 1.09006 * 109.46749 * 299.99324 * 9 7 2 30 30 H 1.09003 * 109.47071 * 59.99239 * 10 9 7 31 31 H 1.09004 * 109.46613 * 300.00058 * 10 9 7 32 32 H 1.09002 * 110.64468 * 40.35083 * 12 11 10 33 33 H 1.09000 * 110.78135 * 277.35132 * 12 11 10 34 34 H 1.09000 * 110.71770 * 204.68038 * 13 12 11 35 35 H 1.09001 * 110.72082 * 81.40436 * 13 12 11 36 36 H 1.08997 * 110.37061 * 263.05842 * 14 13 12 37 37 H 1.09006 * 110.36602 * 140.72411 * 14 13 12 38 38 H 1.08997 * 111.00193 * 333.67763 * 16 15 11 39 39 H 1.08998 * 111.00009 * 97.48948 * 16 15 11 40 40 H 1.08999 * 110.38378 * 266.03346 * 17 16 15 41 41 H 1.09003 * 110.18203 * 143.99773 * 17 16 15 42 42 H 1.08999 * 109.47312 * 149.69835 * 19 18 17 43 43 H 1.09004 * 109.47399 * 29.69177 * 19 18 17 44 44 H 1.09007 * 109.46942 * 299.99776 * 20 19 18 45 45 H 1.08999 * 109.47222 * 59.99816 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5109 -4.9342 0.0012 12 6 0.6419 -5.0485 -1.2004 13 6 0.4035 -6.5750 -1.3258 14 6 1.7660 -7.1747 -0.9015 15 6 2.4350 -6.0764 -0.0682 16 6 2.7677 -6.5937 1.3422 17 6 4.2476 -7.0161 1.1752 18 7 4.7631 -6.2034 0.0661 19 6 6.1857 -5.9993 -0.2183 20 6 6.6829 -4.7612 0.5306 21 6 8.1687 -4.5484 0.2342 22 9 8.3483 -4.3649 -1.1411 23 9 8.6232 -3.4159 0.9185 24 9 8.8932 -5.6693 0.6536 25 6 3.7594 -5.6746 -0.6595 26 8 3.9014 -4.9783 -1.6423 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6243 -2.5567 0.8904 30 1 2.8721 -3.6042 0.8905 31 1 2.8720 -3.6042 -0.8895 32 1 1.1542 -4.6658 -2.0831 33 1 -0.3010 -4.5236 -1.0470 34 1 0.1670 -6.8450 -2.3550 35 1 -0.3877 -6.8986 -0.6495 36 1 2.3691 -7.4052 -1.7797 37 1 1.6151 -8.0699 -0.2981 38 1 2.6651 -5.8010 2.0833 39 1 2.1455 -7.4504 1.6008 40 1 4.3145 -8.0758 0.9290 41 1 4.8044 -6.8046 2.0881 42 1 6.3251 -5.8562 -1.2898 43 1 6.7505 -6.8725 0.1083 44 1 6.1182 -3.8879 0.2041 45 1 6.5434 -4.9043 1.6021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274039405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:30 Heat of formation + Delta-G solvation = -179.696142 kcal Electronic energy + Delta-G solvation = -30723.848720 eV Core-core repulsion = 26133.171948 eV Total energy + Delta-G solvation = -4590.676773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.28234 -47.78869 -47.74203 -41.32586 -37.71772 -36.58768 -34.19640 -33.44992 -31.88185 -30.52447 -28.54798 -27.79004 -26.09606 -24.49861 -23.47640 -22.77788 -21.79332 -20.88177 -19.94136 -18.97128 -18.72539 -18.45672 -17.70960 -16.68917 -16.32609 -15.96852 -15.54384 -15.16430 -14.84195 -14.63392 -14.57890 -14.47586 -14.30224 -14.18632 -13.99699 -13.92238 -13.87808 -13.66259 -13.25321 -12.93200 -12.70773 -12.40500 -12.29440 -12.08003 -12.00551 -11.74650 -11.64724 -11.48668 -11.12427 -10.89322 -10.85328 -10.77095 -10.53317 -10.50073 -9.93578 -9.82561 -9.35244 -9.11511 -8.90633 -8.31107 -7.74772 -5.96424 -3.98161 2.36647 2.60543 2.89161 3.36107 3.39869 3.43148 3.69850 3.81313 3.85728 4.11412 4.35752 4.47148 4.51694 4.63101 4.63305 4.78574 4.85410 4.98570 5.07406 5.17173 5.22677 5.31350 5.38070 5.39789 5.52794 5.64506 5.76519 5.87226 5.91863 5.96578 6.09196 6.18478 6.36551 6.41077 6.47893 6.58814 6.92000 7.03963 7.35927 7.39650 7.76083 7.89807 8.08545 8.18538 8.47037 9.07856 9.65096 11.15010 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.008154 B = 0.004793 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3433.176312 B = 5840.102280 C = 8605.395396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.051 0.949 9 C 0.032 3.968 10 C 0.026 3.974 11 N -0.483 5.483 12 C 0.036 3.964 13 C -0.122 4.122 14 C -0.106 4.106 15 C 0.060 3.940 16 C -0.113 4.113 17 C 0.102 3.898 18 N -0.623 5.623 19 C 0.128 3.872 20 C -0.190 4.190 21 C 0.458 3.542 22 F -0.181 7.181 23 F -0.182 7.182 24 F -0.186 7.186 25 C 0.508 3.492 26 O -0.506 6.506 27 H 0.260 0.740 28 H 0.017 0.983 29 H 0.021 0.979 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.118 0.882 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.670 -19.431 2.591 22.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.070 0.930 9 C -0.005 4.005 10 C -0.101 4.101 11 N -0.206 5.206 12 C -0.091 4.091 13 C -0.161 4.161 14 C -0.145 4.145 15 C -0.034 4.034 16 C -0.151 4.151 17 C -0.021 4.021 18 N -0.359 5.359 19 C 0.005 3.995 20 C -0.229 4.229 21 C 0.404 3.596 22 F -0.162 7.162 23 F -0.163 7.163 24 F -0.168 7.168 25 C 0.295 3.705 26 O -0.380 6.380 27 H 0.070 0.930 28 H 0.036 0.964 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.112 0.888 43 H 0.108 0.892 44 H 0.137 0.863 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 10.375 -18.910 2.515 21.716 hybrid contribution 1.388 1.231 -0.586 1.945 sum 11.762 -17.679 1.929 21.322 Atomic orbital electron populations 1.69958 1.05967 1.26618 1.50788 1.24959 0.94814 0.99053 0.95328 0.86689 0.79631 0.83248 0.78633 1.20254 1.21225 1.20275 1.21111 0.92853 0.91020 1.50732 0.93047 1.19035 0.93776 0.90111 0.97582 1.23001 0.98099 0.88320 1.00655 1.65132 1.15898 1.01782 1.37819 1.23273 0.98573 0.94962 0.92309 1.22562 0.96438 0.95878 1.01176 1.22260 0.96774 0.96486 0.98962 1.22113 0.90318 0.95126 0.95863 1.22664 0.93617 1.02381 0.96436 1.22248 0.95471 0.94908 0.89497 1.48335 1.04810 1.51089 1.31636 1.21178 0.81241 0.95861 1.01213 1.23370 0.89452 1.04451 1.05673 1.20419 0.91072 0.73802 0.74356 1.93211 1.96380 1.95071 1.31558 1.93213 1.90946 1.52362 1.79782 1.93172 1.80884 1.52684 1.90040 1.21572 0.87401 0.78812 0.82758 1.90708 1.85834 1.35892 1.25530 0.92987 0.96437 0.96062 0.92838 0.92037 0.92929 0.89250 0.91175 0.90633 0.91555 0.90253 0.88893 0.88907 0.90942 0.90400 0.88829 0.89172 0.86329 0.86901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.27 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -15.14 9.11 -34.44 -0.31 -15.46 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.86 4.84 -27.88 -0.13 0.73 16 10 C 0.03 0.57 3.95 -3.83 -0.02 0.55 16 11 N -0.48 -8.68 4.99 -216.77 -1.08 -9.77 16 12 C 0.04 0.63 5.40 -1.75 -0.01 0.62 16 13 C -0.12 -1.54 7.07 -24.73 -0.17 -1.72 16 14 C -0.11 -1.25 6.24 -25.66 -0.16 -1.41 16 15 C 0.06 0.84 0.76 -132.18 -0.10 0.74 16 16 C -0.11 -1.18 6.40 -25.33 -0.16 -1.34 16 17 C 0.10 0.85 7.37 -2.90 -0.02 0.83 16 18 N -0.62 -7.27 2.94 -172.40 -0.51 -7.78 16 19 C 0.13 1.29 5.70 -4.04 -0.02 1.27 16 20 C -0.19 -1.95 5.58 -26.73 -0.15 -2.10 16 21 C 0.46 4.93 3.16 37.16 0.12 5.05 16 22 F -0.18 -2.22 16.80 2.25 0.04 -2.18 16 23 F -0.18 -2.20 17.32 2.25 0.04 -2.17 16 24 F -0.19 -1.85 16.80 2.25 0.04 -1.82 16 25 C 0.51 7.97 5.46 -11.13 -0.06 7.91 16 26 O -0.51 -10.09 15.08 5.56 0.08 -10.00 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.02 0.49 6.96 -51.93 -0.36 0.13 16 29 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.48 5.03 -51.93 -0.26 1.22 16 32 H 0.05 1.02 7.99 -51.93 -0.41 0.60 16 33 H 0.09 1.63 7.71 -51.93 -0.40 1.23 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.80 7.73 -51.93 -0.40 0.40 16 37 H 0.08 0.70 7.29 -51.93 -0.38 0.32 16 38 H 0.09 1.11 8.10 -51.93 -0.42 0.69 16 39 H 0.09 0.75 7.41 -51.93 -0.38 0.36 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.09 1.08 7.59 -51.93 -0.39 0.68 16 43 H 0.09 0.66 7.80 -51.93 -0.41 0.25 16 44 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 45 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -33.81 369.35 -8.16 -41.97 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -6.75 Total: -1.88 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -1.31 Total: -2.66 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: -0.85 Total: -44.08 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 9 Polarization: -6.27 SS G_CDS: 0.11 Total: -6.16 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.81 -8.16 -41.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.723 kcal (2) G-P(sol) polarization free energy of solvation -33.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds