Wall clock time and date at job start Tue Mar 31 2020 21:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99887 * 2 1 4 4 H 1.48495 * 109.47317 * 239.99676 * 3 2 1 5 5 H 1.48507 * 109.47083 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47015 * 119.99429 * 3 2 1 7 7 C 1.37872 * 120.00310 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00142 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99945 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47461 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47437 * 179.97438 * 10 9 7 12 12 C 1.48730 * 111.00018 * 59.94819 * 11 10 9 13 13 C 1.55001 * 103.35163 * 158.81758 * 12 11 10 14 14 C 1.54799 * 102.94230 * 323.04071 * 13 12 11 15 15 C 1.47079 * 111.00003 * 177.10317 * 11 10 9 16 16 C 1.53869 * 110.71126 * 93.72434 * 15 11 10 17 17 C 1.54808 * 101.50935 * 215.40446 * 16 15 11 18 18 N 1.46847 * 105.42851 * 25.07085 * 17 16 15 19 19 C 1.46498 * 124.37433 * 163.03718 * 18 17 16 20 20 C 1.52998 * 109.46943 * 269.69964 * 19 18 17 21 21 C 1.52999 * 109.47303 * 179.97438 * 20 19 18 22 22 F 1.39899 * 109.47088 * 59.99874 * 21 20 19 23 23 F 1.39906 * 109.47106 * 179.97438 * 21 20 19 24 24 F 1.39900 * 109.47045 * 299.99861 * 21 20 19 25 25 C 1.34673 * 111.26142 * 342.76375 * 18 17 16 26 26 O 1.21277 * 125.08174 * 181.07749 * 25 18 17 27 27 H 0.97001 * 120.00096 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47246 * 59.99218 * 9 7 2 29 29 H 1.09006 * 109.46749 * 299.99324 * 9 7 2 30 30 H 1.09003 * 109.47071 * 59.99239 * 10 9 7 31 31 H 1.09004 * 109.46613 * 300.00058 * 10 9 7 32 32 H 1.09002 * 110.64468 * 40.35083 * 12 11 10 33 33 H 1.09000 * 110.78135 * 277.35132 * 12 11 10 34 34 H 1.09000 * 110.71770 * 204.68038 * 13 12 11 35 35 H 1.09001 * 110.72082 * 81.40436 * 13 12 11 36 36 H 1.08997 * 110.37061 * 263.05842 * 14 13 12 37 37 H 1.09006 * 110.36602 * 140.72411 * 14 13 12 38 38 H 1.08997 * 111.00193 * 333.67763 * 16 15 11 39 39 H 1.08998 * 111.00009 * 97.48948 * 16 15 11 40 40 H 1.08999 * 110.38378 * 266.03346 * 17 16 15 41 41 H 1.09003 * 110.18203 * 143.99773 * 17 16 15 42 42 H 1.08999 * 109.47312 * 149.69835 * 19 18 17 43 43 H 1.09004 * 109.47399 * 29.69177 * 19 18 17 44 44 H 1.09007 * 109.46942 * 299.99776 * 20 19 18 45 45 H 1.08999 * 109.47222 * 59.99816 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5109 -4.9342 0.0012 12 6 0.6419 -5.0485 -1.2004 13 6 0.4035 -6.5750 -1.3258 14 6 1.7660 -7.1747 -0.9015 15 6 2.4350 -6.0764 -0.0682 16 6 2.7677 -6.5937 1.3422 17 6 4.2476 -7.0161 1.1752 18 7 4.7631 -6.2034 0.0661 19 6 6.1857 -5.9993 -0.2183 20 6 6.6829 -4.7612 0.5306 21 6 8.1687 -4.5484 0.2342 22 9 8.3483 -4.3649 -1.1411 23 9 8.6232 -3.4159 0.9185 24 9 8.8932 -5.6693 0.6536 25 6 3.7594 -5.6746 -0.6595 26 8 3.9014 -4.9783 -1.6423 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6243 -2.5567 0.8904 30 1 2.8721 -3.6042 0.8905 31 1 2.8720 -3.6042 -0.8895 32 1 1.1542 -4.6658 -2.0831 33 1 -0.3010 -4.5236 -1.0470 34 1 0.1670 -6.8450 -2.3550 35 1 -0.3877 -6.8986 -0.6495 36 1 2.3691 -7.4052 -1.7797 37 1 1.6151 -8.0699 -0.2981 38 1 2.6651 -5.8010 2.0833 39 1 2.1455 -7.4504 1.6008 40 1 4.3145 -8.0758 0.9290 41 1 4.8044 -6.8046 2.0881 42 1 6.3251 -5.8562 -1.2898 43 1 6.7505 -6.8725 0.1083 44 1 6.1182 -3.8879 0.2041 45 1 6.5434 -4.9043 1.6021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274039405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:29 Heat of formation + Delta-G solvation = -202.497867 kcal Electronic energy + Delta-G solvation = -30724.837477 eV Core-core repulsion = 26133.171948 eV Total energy + Delta-G solvation = -4591.665530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -51.18525 -48.69326 -48.65410 -42.44682 -38.92173 -37.74014 -35.79736 -34.80198 -33.63056 -31.50689 -30.34663 -28.81327 -27.03289 -26.37873 -24.65580 -23.66477 -23.29494 -21.96204 -21.41067 -20.10964 -19.62289 -19.42251 -18.65852 -18.55839 -17.51760 -17.17439 -16.77713 -16.47619 -16.20906 -15.95557 -15.87206 -15.57783 -15.50896 -15.11652 -15.03846 -14.84145 -14.79623 -14.61946 -14.44146 -14.33797 -14.04585 -13.86199 -13.60305 -13.45921 -13.07886 -12.87790 -12.86832 -12.67520 -12.57770 -12.45039 -12.33568 -12.20540 -12.04140 -11.71927 -11.48293 -11.38151 -11.30994 -11.10668 -10.59738 -9.87865 -9.21758 -8.24802 -6.36122 1.33395 1.33865 1.37332 1.45336 1.58723 1.99948 2.35278 2.82241 2.92500 2.93664 2.98736 3.07841 3.38600 3.52442 3.65508 3.78693 3.82398 3.91469 4.10951 4.22099 4.23454 4.35023 4.44000 4.45626 4.58145 4.64155 4.70765 4.72064 4.77898 4.90833 4.98403 5.01555 5.09945 5.15789 5.24433 5.27631 5.36857 5.51042 5.59391 5.70764 5.92424 5.96112 6.08292 6.24736 6.78304 7.06416 7.32328 8.87118 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.008154 B = 0.004793 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3433.176312 B = 5840.102280 C = 8605.395396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.961 3.039 4 H -0.273 1.273 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.049 0.951 9 C 0.043 3.957 10 C 0.051 3.949 11 N -0.487 5.487 12 C 0.029 3.971 13 C -0.111 4.111 14 C -0.099 4.099 15 C 0.048 3.952 16 C -0.108 4.108 17 C 0.100 3.900 18 N -0.616 5.616 19 C 0.126 3.874 20 C -0.183 4.183 21 C 0.463 3.537 22 F -0.192 7.192 23 F -0.190 7.190 24 F -0.176 7.176 25 C 0.495 3.505 26 O -0.565 6.565 27 H 0.265 0.735 28 H -0.011 1.011 29 H -0.004 1.004 30 H 0.051 0.949 31 H 0.041 0.959 32 H 0.018 0.982 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.124 0.876 38 H 0.074 0.926 39 H 0.129 0.871 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.073 0.927 43 H 0.131 0.869 44 H 0.086 0.914 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.934 -22.057 4.326 25.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.067 0.933 9 C 0.006 3.994 10 C -0.076 4.076 11 N -0.210 5.210 12 C -0.098 4.098 13 C -0.148 4.148 14 C -0.137 4.137 15 C -0.046 4.046 16 C -0.146 4.146 17 C -0.021 4.021 18 N -0.349 5.349 19 C 0.004 3.996 20 C -0.223 4.223 21 C 0.409 3.591 22 F -0.174 7.174 23 F -0.172 7.172 24 F -0.157 7.157 25 C 0.282 3.718 26 O -0.443 6.443 27 H 0.074 0.926 28 H 0.008 0.992 29 H 0.014 0.986 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.037 0.963 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.080 0.920 37 H 0.142 0.858 38 H 0.092 0.908 39 H 0.147 0.853 40 H 0.129 0.871 41 H 0.123 0.877 42 H 0.091 0.909 43 H 0.149 0.851 44 H 0.105 0.895 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 11.661 -21.586 4.295 24.908 hybrid contribution 0.995 2.012 -1.124 2.511 sum 12.656 -19.574 3.171 23.524 Atomic orbital electron populations 1.70084 1.07597 1.27908 1.51097 1.25888 0.95782 1.03017 0.94450 0.85566 0.78460 0.78354 0.79086 1.19820 1.20026 1.18895 1.21486 0.92997 0.92553 1.51408 0.93307 1.18826 0.93913 0.91834 0.94830 1.22463 0.96466 0.89211 0.99486 1.65055 1.16701 1.01248 1.37997 1.23260 0.97011 0.98756 0.90821 1.22542 0.97959 0.91519 1.02821 1.22333 0.95270 0.96952 0.99146 1.22447 0.89084 0.94053 0.98986 1.22745 0.95844 1.02981 0.93008 1.22615 0.93938 0.96203 0.89334 1.48436 1.04822 1.50116 1.31500 1.21326 0.80781 0.97240 1.00294 1.23297 0.88590 1.03297 1.07079 1.20404 0.91278 0.73729 0.73716 1.93192 1.96455 1.95157 1.32579 1.93196 1.91071 1.53008 1.79899 1.93189 1.80705 1.52001 1.89853 1.21906 0.89052 0.78365 0.82451 1.90674 1.86749 1.38643 1.28260 0.92574 0.99236 0.98601 0.93033 0.94133 0.96331 0.91500 0.89715 0.88607 0.91957 0.85758 0.90754 0.85277 0.87109 0.87689 0.90865 0.85131 0.89530 0.84449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.37 13.29 21.45 0.28 -58.08 16 2 C 0.01 0.43 5.46 84.65 0.46 0.89 16 3 Si 0.96 46.50 29.54 68.60 2.03 48.52 16 4 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.55 -33.42 9.11 25.60 0.23 -33.18 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 9 C 0.04 2.48 4.84 29.85 0.14 2.63 16 10 C 0.05 2.41 3.95 86.30 0.34 2.75 16 11 N -0.49 -18.08 4.99 -839.73 -4.19 -22.27 16 12 C 0.03 1.08 5.40 86.63 0.47 1.55 16 13 C -0.11 -2.64 7.07 31.89 0.23 -2.41 16 14 C -0.10 -2.03 6.24 31.29 0.20 -1.84 16 15 C 0.05 1.29 0.76 3.06 0.00 1.29 16 16 C -0.11 -1.87 6.40 31.50 0.20 -1.67 16 17 C 0.10 1.21 7.37 86.93 0.64 1.85 16 18 N -0.62 -13.05 2.94 -817.80 -2.41 -15.46 16 19 C 0.13 2.32 5.70 86.38 0.49 2.81 16 20 C -0.18 -3.59 5.58 30.59 0.17 -3.42 16 21 C 0.46 9.53 3.16 71.98 0.23 9.76 16 22 F -0.19 -4.73 16.80 44.97 0.76 -3.97 16 23 F -0.19 -4.50 17.32 44.97 0.78 -3.72 16 24 F -0.18 -3.09 16.80 44.97 0.76 -2.34 16 25 C 0.49 15.52 5.46 87.61 0.48 16.00 16 26 O -0.56 -23.88 15.08 -3.02 -0.05 -23.93 16 27 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 28 H -0.01 -0.66 6.96 -2.39 -0.02 -0.68 16 29 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 30 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.04 2.11 5.03 -2.38 -0.01 2.10 16 32 H 0.02 0.78 7.99 -2.39 -0.02 0.77 16 33 H 0.07 2.66 7.71 -2.39 -0.02 2.65 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.06 1.36 7.73 -2.39 -0.02 1.34 16 37 H 0.12 1.48 7.29 -2.38 -0.02 1.46 16 38 H 0.07 1.61 8.10 -2.39 -0.02 1.59 16 39 H 0.13 1.33 7.41 -2.39 -0.02 1.31 16 40 H 0.11 0.63 8.14 -2.39 -0.02 0.62 16 41 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.07 1.68 7.59 -2.39 -0.02 1.66 16 43 H 0.13 1.37 7.80 -2.38 -0.02 1.35 16 44 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 45 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -80.55 369.35 3.24 -77.31 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 1.00 Total: 6.92 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 4.28 Total: -2.99 kcal Atomic # 7 Polarization: -89.50 SS G_CDS: -6.31 Total: -95.81 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.05 Total: -23.93 kcal Atomic # 9 Polarization: -12.32 SS G_CDS: 2.29 Total: -10.03 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -80.55 3.24 -77.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.187 kcal (2) G-P(sol) polarization free energy of solvation -80.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds