Wall clock time and date at job start Tue Mar 31 2020 21:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00423 * 2 1 4 4 H 1.48497 * 109.47098 * 185.02145 * 3 2 1 5 5 H 1.48494 * 109.46910 * 305.02349 * 3 2 1 6 6 H 1.48499 * 109.46704 * 65.02035 * 3 2 1 7 7 C 1.37884 * 119.99647 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00286 * 173.34792 * 7 2 1 9 9 C 1.50697 * 119.99760 * 353.61870 * 7 2 1 10 10 C 1.53001 * 109.47165 * 184.51540 * 9 7 2 11 11 N 1.46901 * 109.47516 * 181.39389 * 10 9 7 12 12 C 1.48142 * 110.99954 * 294.65142 * 11 10 9 13 13 C 1.54071 * 107.15281 * 215.69127 * 12 11 10 14 14 C 1.54815 * 105.20224 * 1.07163 * 13 12 11 15 15 C 1.47191 * 111.00059 * 177.34792 * 11 10 9 16 16 C 1.53428 * 111.47130 * 278.28472 * 15 11 10 17 17 C 1.54740 * 101.46775 * 98.36410 * 16 15 11 18 18 N 1.46907 * 105.52277 * 24.38045 * 17 16 15 19 19 C 1.46497 * 124.38007 * 163.21260 * 18 17 16 20 20 C 1.52995 * 109.47148 * 91.41309 * 19 18 17 21 21 C 1.52998 * 109.47230 * 184.88489 * 20 19 18 22 22 F 1.39900 * 109.47322 * 61.27993 * 21 20 19 23 23 F 1.39899 * 109.47872 * 181.28210 * 21 20 19 24 24 F 1.39905 * 109.47139 * 301.28544 * 21 20 19 25 25 C 1.34816 * 111.24528 * 343.21228 * 18 17 16 26 26 O 1.21280 * 125.17244 * 181.13761 * 25 18 17 27 27 H 0.97006 * 119.99711 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47652 * 304.51564 * 9 7 2 29 29 H 1.09000 * 109.47228 * 64.52215 * 9 7 2 30 30 H 1.08997 * 109.46923 * 301.39689 * 10 9 7 31 31 H 1.09001 * 109.46973 * 61.39307 * 10 9 7 32 32 H 1.09007 * 109.89995 * 335.07672 * 12 11 10 33 33 H 1.08999 * 109.89908 * 96.30593 * 12 11 10 34 34 H 1.09007 * 110.29664 * 120.00431 * 13 12 11 35 35 H 1.08997 * 110.29661 * 242.03871 * 13 12 11 36 36 H 1.08998 * 110.74565 * 139.09963 * 14 13 12 37 37 H 1.08994 * 110.74736 * 262.26518 * 14 13 12 38 38 H 1.09006 * 111.02621 * 216.40592 * 16 15 11 39 39 H 1.09005 * 111.03175 * 340.31271 * 16 15 11 40 40 H 1.08994 * 110.24303 * 143.39024 * 17 16 15 41 41 H 1.09002 * 110.23769 * 265.29008 * 17 16 15 42 42 H 1.08997 * 109.46902 * 211.41497 * 19 18 17 43 43 H 1.08997 * 109.46849 * 331.41532 * 19 18 17 44 44 H 1.09001 * 109.47718 * 304.88499 * 20 19 18 45 45 H 1.09004 * 109.47411 * 64.88628 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7045 1.3489 -0.1225 5 1 1.8009 2.4481 -1.1465 6 1 1.9847 2.3419 1.2691 7 6 2.0045 -1.1942 -0.0005 8 1 3.0789 -1.1974 -0.1089 9 6 1.2578 -2.4952 0.1439 10 6 2.2575 -3.6506 0.2255 11 7 1.5292 -4.9218 0.3327 12 6 0.7771 -4.9968 1.6068 13 6 0.8257 -6.4631 2.0775 14 6 1.6701 -7.2036 1.0121 15 6 2.4590 -6.0627 0.3500 16 6 2.9026 -6.4471 -1.0675 17 6 4.2756 -5.7397 -1.1627 18 7 4.7371 -5.5889 0.2239 19 6 6.1205 -5.2983 0.6082 20 6 6.3126 -3.7843 0.7159 21 6 7.7845 -3.4757 0.9975 22 9 8.5703 -3.9470 -0.0596 23 9 7.9551 -2.0930 1.1250 24 9 8.1740 -4.1050 2.1847 25 6 3.7229 -5.7526 1.0968 26 8 3.8175 -5.6621 2.3026 27 1 -0.4850 0.8401 -0.0004 28 1 0.6566 -2.4702 1.0528 29 1 0.6069 -2.6383 -0.7186 30 1 2.8753 -3.6604 -0.6724 31 1 2.8924 -3.5205 1.1019 32 1 1.2438 -4.3522 2.3518 33 1 -0.2572 -4.6929 1.4456 34 1 1.3050 -6.5310 3.0542 35 1 -0.1806 -6.8797 2.1212 36 1 2.3458 -7.9177 1.4829 37 1 1.0265 -7.7029 0.2879 38 1 3.0119 -7.5274 -1.1637 39 1 2.2095 -6.0579 -1.8134 40 1 4.9770 -6.3523 -1.7289 41 1 4.1645 -4.7625 -1.6327 42 1 6.3348 -5.7612 1.5715 43 1 6.7986 -5.6979 -0.1458 44 1 6.0153 -3.3127 -0.2208 45 1 5.6982 -3.3969 1.5287 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274039406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:41 Heat of formation + Delta-G solvation = -186.577806 kcal Electronic energy + Delta-G solvation = -31066.036000 eV Core-core repulsion = 26475.060816 eV Total energy + Delta-G solvation = -4590.975184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 7.30 seconds Orbital eigenvalues (eV) -50.21638 -47.71512 -47.68192 -41.35550 -37.66675 -36.48104 -34.13544 -33.58998 -31.98454 -30.49535 -28.58934 -27.79834 -26.10887 -24.58833 -23.52071 -22.79749 -21.57937 -21.00032 -19.87875 -18.88203 -18.65649 -18.40123 -17.66826 -16.85576 -16.42317 -16.03907 -15.39229 -15.23398 -14.84137 -14.63615 -14.52876 -14.47347 -14.12699 -14.00055 -13.86203 -13.84379 -13.75936 -13.49351 -13.31784 -13.16213 -12.57208 -12.48905 -12.41214 -12.18722 -11.90880 -11.77799 -11.60742 -11.40769 -11.11635 -10.96150 -10.90816 -10.77994 -10.70126 -10.52879 -9.98065 -9.74424 -9.43909 -9.18112 -8.86125 -8.37971 -7.97822 -6.04823 -4.06644 2.43904 2.59776 2.94363 3.28342 3.36415 3.39573 3.77433 3.89327 3.93634 4.14484 4.37446 4.39570 4.52589 4.69870 4.71544 4.82010 4.89568 5.07984 5.13463 5.23773 5.30804 5.31534 5.39659 5.44630 5.62360 5.71095 5.79708 5.82508 5.94153 6.01706 6.12040 6.13984 6.30254 6.35571 6.40552 6.51613 6.83022 6.98258 7.26619 7.33023 7.66223 7.81077 7.99377 8.16991 8.36190 8.99290 9.57042 11.06512 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.007420 B = 0.005699 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3772.912123 B = 4912.233617 C = 7783.598034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.031 3.969 10 C 0.048 3.952 11 N -0.481 5.481 12 C 0.040 3.960 13 C -0.128 4.128 14 C -0.097 4.097 15 C 0.057 3.943 16 C -0.115 4.115 17 C 0.097 3.903 18 N -0.620 5.620 19 C 0.130 3.870 20 C -0.191 4.191 21 C 0.458 3.542 22 F -0.186 7.186 23 F -0.180 7.180 24 F -0.184 7.184 25 C 0.513 3.487 26 O -0.519 6.519 27 H 0.260 0.740 28 H 0.018 0.982 29 H 0.024 0.976 30 H 0.063 0.937 31 H 0.024 0.976 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.116 0.884 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.609 -15.614 -1.761 18.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.007 4.007 10 C -0.079 4.079 11 N -0.205 5.205 12 C -0.088 4.088 13 C -0.166 4.166 14 C -0.136 4.136 15 C -0.036 4.036 16 C -0.153 4.153 17 C -0.025 4.025 18 N -0.355 5.355 19 C 0.007 3.993 20 C -0.230 4.230 21 C 0.404 3.596 22 F -0.167 7.167 23 F -0.162 7.162 24 F -0.165 7.165 25 C 0.299 3.701 26 O -0.393 6.393 27 H 0.070 0.930 28 H 0.036 0.964 29 H 0.043 0.957 30 H 0.082 0.918 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.124 0.876 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.135 0.865 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.254 -15.443 -1.529 18.600 hybrid contribution 1.372 1.431 0.699 2.102 sum 11.626 -14.012 -0.831 18.226 Atomic orbital electron populations 1.69986 1.06020 1.26549 1.50293 1.24963 0.94784 0.99128 0.95188 0.86602 0.80170 0.83941 0.77704 1.19743 1.21010 1.20869 1.21135 0.93368 0.91111 1.50496 0.92935 1.19051 0.93755 0.89988 0.97872 1.22659 0.97345 0.88803 0.99096 1.64921 1.20150 1.01908 1.33544 1.22890 0.99896 0.95676 0.90329 1.22451 0.99957 0.95324 0.98850 1.22197 0.97870 0.95585 0.97925 1.22147 0.90636 0.95415 0.95450 1.22473 0.95598 1.00623 0.96619 1.22327 0.96373 1.01599 0.82203 1.48363 1.07680 1.71263 1.08206 1.21177 0.82931 0.92209 1.02957 1.23383 0.90120 1.01187 1.08338 1.20435 0.90777 0.74402 0.74007 1.93172 1.77777 1.88385 1.57393 1.93219 1.96399 1.30855 1.95697 1.93192 1.92780 1.82274 1.48263 1.21386 0.86410 0.75345 0.86958 1.90695 1.84684 1.50602 1.13279 0.92986 0.96354 0.95726 0.91821 0.95785 0.93051 0.89868 0.91243 0.91185 0.91298 0.89863 0.89735 0.87624 0.90293 0.90317 0.88988 0.89162 0.86513 0.86484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.30 55.43 0.74 -25.71 16 2 C 0.06 1.74 5.45 -17.82 -0.10 1.64 16 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.52 -14.50 9.10 -34.44 -0.31 -14.82 16 8 H 0.05 1.42 7.76 -52.49 -0.41 1.01 16 9 C 0.03 0.78 4.95 -27.88 -0.14 0.64 16 10 C 0.05 0.97 3.81 -3.82 -0.01 0.96 16 11 N -0.48 -8.34 4.97 -218.03 -1.08 -9.42 16 12 C 0.04 0.69 5.42 -2.58 -0.01 0.67 16 13 C -0.13 -1.76 6.55 -25.22 -0.17 -1.92 16 14 C -0.10 -1.20 5.84 -25.41 -0.15 -1.35 16 15 C 0.06 0.80 0.63 -132.32 -0.08 0.72 16 16 C -0.12 -1.21 6.26 -25.59 -0.16 -1.37 16 17 C 0.10 0.99 6.59 -2.90 -0.02 0.97 16 18 N -0.62 -7.76 2.93 -172.55 -0.51 -8.27 16 19 C 0.13 1.42 5.68 -4.05 -0.02 1.39 16 20 C -0.19 -2.25 5.58 -26.73 -0.15 -2.40 16 21 C 0.46 5.39 3.16 37.16 0.12 5.50 16 22 F -0.19 -2.06 16.77 2.25 0.04 -2.02 16 23 F -0.18 -2.44 17.32 2.25 0.04 -2.40 16 24 F -0.18 -2.26 16.84 2.25 0.04 -2.22 16 25 C 0.51 7.98 4.72 -11.28 -0.05 7.93 16 26 O -0.52 -9.77 17.10 5.56 0.10 -9.68 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.02 0.50 7.39 -51.93 -0.38 0.11 16 29 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 1.23 5.97 -51.93 -0.31 0.92 16 31 H 0.02 0.53 6.80 -51.93 -0.35 0.18 16 32 H 0.05 1.01 7.62 -51.92 -0.40 0.62 16 33 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.80 8.00 -51.93 -0.42 0.39 16 37 H 0.08 0.87 8.06 -51.93 -0.42 0.45 16 38 H 0.08 0.69 7.94 -51.93 -0.41 0.27 16 39 H 0.11 1.15 8.07 -51.93 -0.42 0.73 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.87 6.86 -51.93 -0.36 0.51 16 42 H 0.09 1.06 7.76 -51.93 -0.40 0.66 16 43 H 0.09 0.74 7.70 -51.93 -0.40 0.34 16 44 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.12 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 369.07 15.07 5.56 5.56 Total: -1.00 -32.17 369.07 -8.13 -40.30 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.77 Total: -1.25 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -1.26 Total: -1.43 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: -0.85 Total: -43.41 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.10 Total: -9.68 kcal Atomic # 9 Polarization: -6.75 SS G_CDS: 0.11 Total: -6.64 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.17 -8.13 -40.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.276 kcal (2) G-P(sol) polarization free energy of solvation -32.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.30 seconds