Wall clock time and date at job start Tue Mar 31 2020 21:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00423 * 2 1 4 4 H 1.48497 * 109.47098 * 185.02145 * 3 2 1 5 5 H 1.48494 * 109.46910 * 305.02349 * 3 2 1 6 6 H 1.48499 * 109.46704 * 65.02035 * 3 2 1 7 7 C 1.37884 * 119.99647 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00286 * 173.34792 * 7 2 1 9 9 C 1.50697 * 119.99760 * 353.61870 * 7 2 1 10 10 C 1.53001 * 109.47165 * 184.51540 * 9 7 2 11 11 N 1.46901 * 109.47516 * 181.39389 * 10 9 7 12 12 C 1.48142 * 110.99954 * 294.65142 * 11 10 9 13 13 C 1.54071 * 107.15281 * 215.69127 * 12 11 10 14 14 C 1.54815 * 105.20224 * 1.07163 * 13 12 11 15 15 C 1.47191 * 111.00059 * 177.34792 * 11 10 9 16 16 C 1.53428 * 111.47130 * 278.28472 * 15 11 10 17 17 C 1.54740 * 101.46775 * 98.36410 * 16 15 11 18 18 N 1.46907 * 105.52277 * 24.38045 * 17 16 15 19 19 C 1.46497 * 124.38007 * 163.21260 * 18 17 16 20 20 C 1.52995 * 109.47148 * 91.41309 * 19 18 17 21 21 C 1.52998 * 109.47230 * 184.88489 * 20 19 18 22 22 F 1.39900 * 109.47322 * 61.27993 * 21 20 19 23 23 F 1.39899 * 109.47872 * 181.28210 * 21 20 19 24 24 F 1.39905 * 109.47139 * 301.28544 * 21 20 19 25 25 C 1.34816 * 111.24528 * 343.21228 * 18 17 16 26 26 O 1.21280 * 125.17244 * 181.13761 * 25 18 17 27 27 H 0.97006 * 119.99711 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47652 * 304.51564 * 9 7 2 29 29 H 1.09000 * 109.47228 * 64.52215 * 9 7 2 30 30 H 1.08997 * 109.46923 * 301.39689 * 10 9 7 31 31 H 1.09001 * 109.46973 * 61.39307 * 10 9 7 32 32 H 1.09007 * 109.89995 * 335.07672 * 12 11 10 33 33 H 1.08999 * 109.89908 * 96.30593 * 12 11 10 34 34 H 1.09007 * 110.29664 * 120.00431 * 13 12 11 35 35 H 1.08997 * 110.29661 * 242.03871 * 13 12 11 36 36 H 1.08998 * 110.74565 * 139.09963 * 14 13 12 37 37 H 1.08994 * 110.74736 * 262.26518 * 14 13 12 38 38 H 1.09006 * 111.02621 * 216.40592 * 16 15 11 39 39 H 1.09005 * 111.03175 * 340.31271 * 16 15 11 40 40 H 1.08994 * 110.24303 * 143.39024 * 17 16 15 41 41 H 1.09002 * 110.23769 * 265.29008 * 17 16 15 42 42 H 1.08997 * 109.46902 * 211.41497 * 19 18 17 43 43 H 1.08997 * 109.46849 * 331.41532 * 19 18 17 44 44 H 1.09001 * 109.47718 * 304.88499 * 20 19 18 45 45 H 1.09004 * 109.47411 * 64.88628 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7045 1.3489 -0.1225 5 1 1.8009 2.4481 -1.1465 6 1 1.9847 2.3419 1.2691 7 6 2.0045 -1.1942 -0.0005 8 1 3.0789 -1.1974 -0.1089 9 6 1.2578 -2.4952 0.1439 10 6 2.2575 -3.6506 0.2255 11 7 1.5292 -4.9218 0.3327 12 6 0.7771 -4.9968 1.6068 13 6 0.8257 -6.4631 2.0775 14 6 1.6701 -7.2036 1.0121 15 6 2.4590 -6.0627 0.3500 16 6 2.9026 -6.4471 -1.0675 17 6 4.2756 -5.7397 -1.1627 18 7 4.7371 -5.5889 0.2239 19 6 6.1205 -5.2983 0.6082 20 6 6.3126 -3.7843 0.7159 21 6 7.7845 -3.4757 0.9975 22 9 8.5703 -3.9470 -0.0596 23 9 7.9551 -2.0930 1.1250 24 9 8.1740 -4.1050 2.1847 25 6 3.7229 -5.7526 1.0968 26 8 3.8175 -5.6621 2.3026 27 1 -0.4850 0.8401 -0.0004 28 1 0.6566 -2.4702 1.0528 29 1 0.6069 -2.6383 -0.7186 30 1 2.8753 -3.6604 -0.6724 31 1 2.8924 -3.5205 1.1019 32 1 1.2438 -4.3522 2.3518 33 1 -0.2572 -4.6929 1.4456 34 1 1.3050 -6.5310 3.0542 35 1 -0.1806 -6.8797 2.1212 36 1 2.3458 -7.9177 1.4829 37 1 1.0265 -7.7029 0.2879 38 1 3.0119 -7.5274 -1.1637 39 1 2.2095 -6.0579 -1.8134 40 1 4.9770 -6.3523 -1.7289 41 1 4.1645 -4.7625 -1.6327 42 1 6.3348 -5.7612 1.5715 43 1 6.7986 -5.6979 -0.1458 44 1 6.0153 -3.3127 -0.2208 45 1 5.6982 -3.3969 1.5287 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274039406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:40 Heat of formation + Delta-G solvation = -207.347043 kcal Electronic energy + Delta-G solvation = -31066.936622 eV Core-core repulsion = 26475.060816 eV Total energy + Delta-G solvation = -4591.875806 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = -0.66 seconds Orbital eigenvalues (eV) -51.19804 -48.70342 -48.66249 -42.49366 -38.90030 -37.62364 -35.80788 -34.83141 -33.73564 -31.52948 -30.36257 -28.85450 -27.10374 -26.40158 -24.75076 -23.84920 -23.04761 -22.01243 -21.36970 -20.03412 -19.63459 -19.43627 -18.76966 -18.51904 -17.56320 -17.46799 -16.68507 -16.49478 -16.32243 -16.02855 -15.67255 -15.56220 -15.20624 -15.11830 -14.97194 -14.84119 -14.78941 -14.65226 -14.50446 -14.45839 -14.19840 -13.74654 -13.49554 -13.41332 -13.28979 -13.00072 -12.95878 -12.78589 -12.54074 -12.50089 -12.29251 -12.19305 -12.10372 -11.71708 -11.64130 -11.32171 -11.26728 -10.97558 -10.57987 -9.86648 -9.42328 -8.24370 -6.34176 1.33072 1.35528 1.37314 1.48956 1.55356 1.97829 2.35886 2.80066 2.91584 2.94246 2.97481 3.09600 3.37169 3.44827 3.68588 3.77530 3.80801 3.92819 4.08184 4.15922 4.21203 4.32224 4.37503 4.44282 4.45004 4.61481 4.67010 4.71166 4.77510 4.89919 4.96223 4.97608 5.04847 5.17998 5.20547 5.27618 5.40560 5.47791 5.56444 5.72198 5.90578 5.94804 6.05024 6.22407 6.81074 7.03529 7.34311 8.88022 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.007420 B = 0.005699 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3772.912123 B = 4912.233617 C = 7783.598034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.957 3.043 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.281 1.281 7 C -0.541 4.541 8 H 0.057 0.943 9 C 0.040 3.960 10 C 0.074 3.926 11 N -0.483 5.483 12 C 0.037 3.963 13 C -0.121 4.121 14 C -0.090 4.090 15 C 0.047 3.953 16 C -0.107 4.107 17 C 0.091 3.909 18 N -0.615 5.615 19 C 0.129 3.871 20 C -0.186 4.186 21 C 0.466 3.534 22 F -0.176 7.176 23 F -0.192 7.192 24 F -0.187 7.187 25 C 0.501 3.499 26 O -0.563 6.563 27 H 0.264 0.736 28 H -0.014 1.014 29 H 0.001 0.999 30 H 0.078 0.922 31 H 0.001 0.999 32 H 0.013 0.987 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.121 0.879 39 H 0.105 0.895 40 H 0.123 0.877 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.128 0.872 44 H 0.122 0.878 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.211 -17.272 -3.672 21.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.782 3.218 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.206 1.206 7 C -0.580 4.580 8 H 0.076 0.924 9 C 0.003 3.997 10 C -0.053 4.053 11 N -0.207 5.207 12 C -0.091 4.091 13 C -0.159 4.159 14 C -0.128 4.128 15 C -0.046 4.046 16 C -0.145 4.145 17 C -0.030 4.030 18 N -0.348 5.348 19 C 0.007 3.993 20 C -0.226 4.226 21 C 0.412 3.588 22 F -0.158 7.158 23 F -0.173 7.173 24 F -0.168 7.168 25 C 0.288 3.712 26 O -0.441 6.441 27 H 0.073 0.927 28 H 0.004 0.996 29 H 0.020 0.980 30 H 0.096 0.904 31 H 0.019 0.981 32 H 0.031 0.969 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.130 0.870 38 H 0.139 0.861 39 H 0.124 0.876 40 H 0.141 0.859 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.145 0.855 44 H 0.141 0.859 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.879 -17.117 -3.481 21.124 hybrid contribution 0.864 1.941 1.304 2.493 sum 12.743 -15.176 -2.176 19.936 Atomic orbital electron populations 1.70109 1.07697 1.27710 1.51149 1.25869 0.95656 1.03003 0.94645 0.85518 0.79211 0.79207 0.77881 1.18623 1.19970 1.20646 1.21538 0.93801 0.92301 1.50335 0.92438 1.18855 0.94023 0.91811 0.95058 1.22183 0.95642 0.88920 0.98604 1.64872 1.20867 1.01611 1.33310 1.22866 0.98809 0.97753 0.89660 1.22409 1.01796 0.92906 0.98836 1.22273 0.97853 0.94956 0.97751 1.22421 0.89755 0.94306 0.98159 1.22572 0.95388 1.02923 0.93608 1.22592 0.97365 1.02077 0.80946 1.48482 1.07765 1.69711 1.08847 1.21336 0.82754 0.91325 1.03904 1.23299 0.89745 1.02088 1.07431 1.20305 0.90685 0.73819 0.74027 1.93187 1.77526 1.88184 1.56889 1.93197 1.96452 1.31884 1.95776 1.93189 1.92801 1.82251 1.48589 1.21693 0.87658 0.75150 0.86689 1.90667 1.85479 1.52688 1.15244 0.92703 0.99609 0.98047 0.90369 0.98092 0.96859 0.90957 0.92362 0.88719 0.90074 0.87037 0.86061 0.87641 0.85945 0.91206 0.89847 0.85452 0.85943 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.57 13.30 21.45 0.29 -56.28 16 2 C 0.01 0.39 5.45 84.66 0.46 0.86 16 3 Si 0.96 44.58 29.54 68.60 2.03 46.60 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.54 -30.86 9.10 25.60 0.23 -30.63 16 8 H 0.06 3.14 7.76 -2.91 -0.02 3.12 16 9 C 0.04 2.14 4.95 29.85 0.15 2.29 16 10 C 0.07 3.12 3.81 86.30 0.33 3.45 16 11 N -0.48 -16.93 4.97 -843.73 -4.19 -21.13 16 12 C 0.04 1.35 5.42 86.43 0.47 1.82 16 13 C -0.12 -3.29 6.55 31.58 0.21 -3.08 16 14 C -0.09 -2.00 5.84 31.45 0.18 -1.82 16 15 C 0.05 1.24 0.63 2.90 0.00 1.25 16 16 C -0.11 -1.86 6.26 31.33 0.20 -1.67 16 17 C 0.09 1.53 6.59 86.90 0.57 2.10 16 18 N -0.62 -14.18 2.93 -818.21 -2.40 -16.58 16 19 C 0.13 2.57 5.68 86.38 0.49 3.06 16 20 C -0.19 -4.28 5.58 30.59 0.17 -4.11 16 21 C 0.47 10.48 3.16 71.98 0.23 10.71 16 22 F -0.18 -3.51 16.77 44.97 0.75 -2.75 16 23 F -0.19 -5.08 17.32 44.97 0.78 -4.30 16 24 F -0.19 -4.47 16.84 44.97 0.76 -3.71 16 25 C 0.50 15.31 4.72 87.45 0.41 15.72 16 26 O -0.56 -21.81 17.10 -3.03 -0.05 -21.86 16 27 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 28 H -0.01 -0.86 7.39 -2.39 -0.02 -0.88 16 29 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.08 3.03 5.97 -2.39 -0.01 3.01 16 31 H 0.00 0.04 6.80 -2.39 -0.02 0.03 16 32 H 0.01 0.56 7.62 -2.38 -0.02 0.54 16 33 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 34 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.08 1.65 8.00 -2.39 -0.02 1.63 16 37 H 0.11 1.87 8.06 -2.39 -0.02 1.85 16 38 H 0.12 1.28 7.94 -2.38 -0.02 1.27 16 39 H 0.11 1.92 8.07 -2.38 -0.02 1.90 16 40 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 1.33 6.86 -2.39 -0.02 1.32 16 42 H 0.08 1.84 7.76 -2.39 -0.02 1.82 16 43 H 0.13 1.61 7.70 -2.39 -0.02 1.59 16 44 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 45 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 Total: -1.00 -73.61 369.07 3.06 -70.56 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 1.00 Total: 9.51 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 4.10 Total: -0.05 kcal Atomic # 7 Polarization: -87.69 SS G_CDS: -6.30 Total: -93.99 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.05 Total: -21.86 kcal Atomic # 9 Polarization: -13.05 SS G_CDS: 2.29 Total: -10.76 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -73.61 3.06 -70.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.791 kcal (2) G-P(sol) polarization free energy of solvation -73.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.66 seconds